Wall clock time and date at job start Tue Mar 31 2020 21:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36934 * 119.99947 * 2 1 4 4 H 1.07998 * 120.00284 * 159.86270 * 3 2 1 5 5 C 1.38812 * 120.00244 * 339.86514 * 3 2 1 6 6 N 1.31625 * 119.99646 * 347.47878 * 5 3 2 7 7 Si 1.86800 * 120.00410 * 167.47946 * 5 3 2 8 8 H 1.48501 * 109.47050 * 180.02562 * 7 5 3 9 9 H 1.48504 * 109.46894 * 299.99644 * 7 5 3 10 10 H 1.48502 * 109.47042 * 60.00017 * 7 5 3 11 11 C 1.46503 * 120.00135 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.46915 * 269.99781 * 11 2 1 13 13 H 1.09000 * 109.47324 * 304.99794 * 12 11 2 14 14 O 1.42898 * 109.47331 * 65.00338 * 12 11 2 15 15 C 1.53009 * 109.46983 * 184.99783 * 12 11 2 16 16 N 1.46497 * 109.47313 * 179.97438 * 15 12 11 17 17 C 1.46506 * 119.99545 * 89.99863 * 16 15 12 18 18 C 1.34771 * 120.00404 * 270.00480 * 16 15 12 19 19 O 1.21281 * 119.99738 * 359.97438 * 18 16 15 20 20 C 1.50703 * 120.00029 * 179.97438 * 18 16 15 21 21 H 1.09001 * 109.45010 * 299.95359 * 20 18 16 22 22 C 1.53141 * 109.45031 * 179.97438 * 20 18 16 23 23 C 1.53466 * 109.30312 * 170.53637 * 22 20 18 24 24 C 1.50799 * 108.13306 * 48.70862 * 23 22 20 25 25 N 1.29842 * 128.52071 * 164.11143 * 24 23 22 26 26 N 1.28910 * 109.47817 * 180.09506 * 25 24 23 27 27 C 1.30839 * 109.74065 * 359.97158 * 26 25 24 28 28 N 1.34698 * 107.06984 * 359.96471 * 27 26 25 29 29 C 1.46253 * 128.84724 * 180.14381 * 28 27 26 30 30 H 1.09000 * 109.47591 * 84.85892 * 1 2 3 31 31 H 1.09002 * 109.47462 * 204.86181 * 1 2 3 32 32 H 1.09000 * 109.47327 * 324.85934 * 1 2 3 33 33 H 0.97006 * 119.99842 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46653 * 29.99672 * 11 2 1 35 35 H 1.09002 * 109.46701 * 149.99634 * 11 2 1 36 36 H 0.96696 * 114.00272 * 59.99826 * 14 12 11 37 37 H 1.08991 * 109.47281 * 300.00380 * 15 12 11 38 38 H 1.09005 * 109.46423 * 60.00448 * 15 12 11 39 39 H 1.09007 * 109.46638 * 90.00049 * 17 16 15 40 40 H 1.08994 * 109.47250 * 210.00296 * 17 16 15 41 41 H 1.08998 * 109.47257 * 330.00378 * 17 16 15 42 42 H 1.08996 * 109.50136 * 290.48264 * 22 20 18 43 43 H 1.08994 * 109.50021 * 50.55358 * 22 20 18 44 44 H 1.08996 * 109.72662 * 168.36973 * 23 22 20 45 45 H 1.08997 * 109.73099 * 288.99884 * 23 22 20 46 46 H 1.07997 * 126.46298 * 179.97438 * 27 26 25 47 47 H 1.09002 * 109.59698 * 43.10096 * 29 28 27 48 48 H 1.09001 * 109.59622 * 282.64984 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1801 1.2145 0.3220 5 6 1.5192 2.3513 -0.4138 6 7 0.3597 2.2879 -1.0336 7 14 2.3163 4.0096 -0.0912 8 1 1.4480 5.0888 -0.6267 9 1 2.4935 4.1975 1.3712 10 1 3.6407 4.0609 -0.7610 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 2.9642 -0.9139 1.9811 14 8 1.2061 -1.9944 2.0805 15 6 3.3238 -2.9687 1.4430 16 7 3.5686 -3.3919 2.8240 17 6 2.6484 -4.3257 3.4779 18 6 4.6401 -2.9221 3.4929 19 8 5.4020 -2.1493 2.9514 20 6 4.8914 -3.3570 4.9138 21 1 4.0450 -3.0682 5.5369 22 6 6.1635 -2.6829 5.4360 23 6 6.2888 -2.9355 6.9445 24 6 6.0797 -4.4081 7.1927 25 7 6.3688 -5.0984 8.2537 26 7 6.0355 -6.3299 8.0694 27 6 5.5171 -6.4737 6.8767 28 7 5.5304 -5.2608 6.2910 29 6 5.0613 -4.8800 4.9591 30 1 -0.3634 0.0921 -1.0235 31 1 -0.3634 -0.9324 0.4321 32 1 -0.3634 0.8404 0.5915 33 1 -0.0807 3.1023 -1.3231 34 1 1.6083 -2.0281 -0.5147 35 1 3.1499 -1.1381 -0.5144 36 1 0.6956 -2.6957 1.6531 37 1 2.8122 -3.7657 0.9036 38 1 4.2746 -2.7524 0.9557 39 1 2.9802 -5.3484 3.2984 40 1 2.6345 -4.1311 4.5502 41 1 1.6458 -4.1924 3.0714 42 1 7.0317 -3.0981 4.9242 43 1 6.1097 -1.6103 5.2494 44 1 7.2817 -2.6422 7.2854 45 1 5.5320 -2.3605 7.4780 46 1 5.1480 -7.3916 6.4437 47 1 4.1040 -5.3607 4.7574 48 1 5.7924 -5.1887 4.2119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677185391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:17 Heat of formation + Delta-G solvation = 4.688464 kcal Electronic energy + Delta-G solvation = -30071.446507 eV Core-core repulsion = 25970.177352 eV Total energy + Delta-G solvation = -4101.269154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.32176 -41.43275 -39.09955 -37.80880 -36.93185 -36.03355 -34.62764 -33.33969 -32.51703 -31.10553 -30.09113 -28.10614 -27.82454 -27.19649 -25.68903 -24.51674 -23.40942 -23.29195 -22.29035 -21.09842 -20.06246 -18.83700 -18.35701 -18.29209 -17.60673 -17.23664 -16.90412 -16.72338 -16.51480 -16.24658 -15.94598 -15.48923 -15.43126 -15.24542 -15.08200 -14.73522 -14.62947 -14.56680 -13.89728 -13.68227 -13.32936 -13.19242 -13.03878 -12.96838 -12.81669 -12.67056 -12.62283 -12.50829 -12.28860 -12.20543 -12.06448 -12.02790 -11.96555 -11.83484 -11.38610 -11.32596 -11.10412 -10.93062 -10.61480 -10.22564 -9.61812 -8.70496 -7.83277 -5.29219 0.85745 1.33881 1.42066 1.44575 1.51030 1.56677 1.84346 1.95611 2.48641 3.06513 3.21402 3.28046 3.33569 3.47130 3.57626 3.72003 3.82263 3.91547 3.96840 4.10102 4.14011 4.19655 4.21203 4.29235 4.45248 4.49402 4.54209 4.56101 4.67115 4.72765 4.82432 4.89894 4.93290 4.94098 4.97546 5.04225 5.05110 5.18435 5.25490 5.43480 5.49575 5.59115 5.75712 5.90555 6.30682 6.33127 7.02988 7.08372 7.15383 7.69956 7.89642 8.28894 9.18089 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002481 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.207619 B =11282.977972 C =12171.235405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.614 5.614 3 C -0.260 4.260 4 H 0.061 0.939 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.963 3.037 8 H -0.290 1.290 9 H -0.284 1.284 10 H -0.276 1.276 11 C 0.121 3.879 12 C 0.091 3.909 13 H 0.048 0.952 14 O -0.561 6.561 15 C 0.094 3.906 16 N -0.600 5.600 17 C 0.062 3.938 18 C 0.516 3.484 19 O -0.574 6.574 20 C -0.113 4.113 21 H 0.122 0.878 22 C -0.103 4.103 23 C -0.029 4.029 24 C 0.176 3.824 25 N -0.338 5.338 26 N -0.353 5.353 27 C 0.173 3.827 28 N -0.469 5.469 29 C 0.112 3.888 30 H -0.002 1.002 31 H 0.040 0.960 32 H 0.006 0.994 33 H 0.248 0.752 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.379 0.621 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.265 0.735 47 H 0.144 0.856 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -21.877 10.580 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.337 5.337 3 C -0.391 4.391 4 H 0.079 0.921 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.791 3.209 8 H -0.216 1.216 9 H -0.210 1.210 10 H -0.201 1.201 11 C -0.006 4.006 12 C 0.028 3.972 13 H 0.066 0.934 14 O -0.367 6.367 15 C -0.030 4.030 16 N -0.331 5.331 17 C -0.079 4.079 18 C 0.303 3.697 19 O -0.453 6.453 20 C -0.135 4.135 21 H 0.140 0.860 22 C -0.142 4.142 23 C -0.069 4.069 24 C -0.093 4.093 25 N -0.177 5.177 26 N -0.191 5.191 27 C -0.115 4.115 28 N -0.160 5.160 29 C -0.010 4.010 30 H 0.017 0.983 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.227 0.773 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.280 0.720 47 H 0.161 0.839 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.623 -21.270 11.989 25.298 hybrid contribution -0.339 1.359 -1.656 2.169 sum 6.284 -19.912 10.333 23.296 Atomic orbital electron populations 1.20458 0.82306 0.96110 0.96817 1.43987 1.02327 1.01367 1.86020 1.19408 0.96515 0.86891 1.36251 0.92105 1.25670 0.98409 1.01454 0.99426 1.70234 1.18345 1.27045 1.42872 0.85405 0.77782 0.79965 0.77717 1.21628 1.21041 1.20140 1.21544 0.96382 0.87899 0.94733 1.22723 0.84287 0.95398 0.94790 0.93351 1.86616 1.32850 1.60720 1.56514 1.22138 1.00782 0.97290 0.82799 1.47822 1.25265 1.45987 1.13986 1.22359 0.94360 0.92617 0.98612 1.20571 0.80696 0.80491 0.87949 1.90757 1.48322 1.36475 1.69763 1.21571 1.02146 0.95726 0.94031 0.86024 1.21481 0.96187 1.02634 0.93852 1.20325 1.05861 0.84256 0.96439 1.25182 0.99499 0.97364 0.87296 1.73997 1.21836 0.99121 1.22733 1.74397 1.17562 1.10640 1.16475 1.27106 1.01800 0.91452 0.91186 1.46273 1.45805 1.08458 1.15480 1.22403 1.04383 0.93882 0.80340 0.98337 0.94177 0.97534 0.94317 0.91127 0.93530 0.77291 0.86226 0.90621 0.88958 0.90183 0.89360 0.90985 0.89579 0.87122 0.87313 0.71955 0.83877 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.16 8.74 127.77 1.12 10.28 16 2 N -0.61 -30.34 2.89 -726.96 -2.10 -32.44 16 3 C -0.26 -14.65 9.69 84.03 0.81 -13.83 16 4 H 0.06 3.42 7.86 -2.91 -0.02 3.39 16 5 C -0.05 -3.15 5.12 84.86 0.43 -2.72 16 6 N -0.94 -56.26 10.51 21.65 0.23 -56.03 16 7 Si 0.96 46.56 29.57 68.60 2.03 48.59 16 8 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 9 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 C 0.12 4.40 5.30 86.38 0.46 4.86 16 12 C 0.09 2.75 3.48 30.60 0.11 2.86 16 13 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 14 O -0.56 -15.41 10.98 -148.98 -1.64 -17.05 16 15 C 0.09 1.89 5.10 86.38 0.44 2.33 16 16 N -0.60 -9.66 2.80 -846.74 -2.37 -12.03 16 17 C 0.06 0.40 8.52 127.77 1.09 1.49 16 18 C 0.52 10.47 7.06 87.66 0.62 11.09 16 19 O -0.57 -17.67 15.40 -3.03 -0.05 -17.72 16 20 C -0.11 -1.46 1.73 -11.39 -0.02 -1.48 16 21 H 0.12 1.37 7.38 -2.39 -0.02 1.35 16 22 C -0.10 -1.56 4.68 30.80 0.14 -1.42 16 23 C -0.03 -0.41 6.34 30.04 0.19 -0.22 16 24 C 0.18 3.26 7.75 138.14 1.07 4.33 16 25 N -0.34 -8.63 12.21 -50.28 -0.61 -9.24 16 26 N -0.35 -8.28 12.23 -60.31 -0.74 -9.02 16 27 C 0.17 2.28 12.83 180.27 2.31 4.59 16 28 N -0.47 -5.98 3.11 -519.41 -1.62 -7.60 16 29 C 0.11 0.81 5.81 86.53 0.50 1.31 16 30 H 0.00 -0.09 7.42 -2.39 -0.02 -0.11 16 31 H 0.04 1.58 7.22 -2.39 -0.02 1.56 16 32 H 0.01 0.32 7.13 -2.39 -0.02 0.31 16 33 H 0.25 14.47 8.31 -92.70 -0.77 13.69 16 34 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 35 H 0.05 1.76 8.04 -2.39 -0.02 1.74 16 36 H 0.38 6.80 8.79 -74.06 -0.65 6.14 16 37 H 0.12 1.46 8.07 -2.39 -0.02 1.44 16 38 H 0.08 1.84 7.42 -2.38 -0.02 1.82 16 39 H 0.09 -0.01 7.18 -2.38 -0.02 -0.03 16 40 H 0.08 0.40 5.89 -2.39 -0.01 0.39 16 41 H 0.09 0.59 6.88 -2.39 -0.02 0.58 16 42 H 0.07 1.18 8.12 -2.39 -0.02 1.17 16 43 H 0.09 1.58 7.79 -2.39 -0.02 1.56 16 44 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.26 0.54 8.06 -2.91 -0.02 0.51 16 47 H 0.14 0.10 4.88 -2.39 -0.01 0.09 16 48 H 0.10 0.69 8.12 -2.39 -0.02 0.67 16 Total: -1.00 -87.05 380.21 2.75 -84.31 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.33 Total: 4.78 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 9.28 Total: 23.45 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -7.21 Total: -126.36 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.68 Total: -34.77 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -87.05 2.75 -84.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677185391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.996 kcal (2) G-P(sol) polarization free energy of solvation -87.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds