Wall clock time and date at job start Tue Mar 31 2020 21:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00226 * 2 1 4 4 C 1.38395 * 119.99856 * 179.97438 * 2 1 3 5 5 C 1.39889 * 120.00148 * 4.99984 * 4 2 1 6 6 N 1.31453 * 120.01850 * 179.97438 * 5 4 2 7 7 C 1.33283 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.47821 * 120.00018 * 179.97438 * 7 6 5 9 9 O 1.21561 * 119.99687 * 173.52477 * 8 7 6 10 10 N 1.34770 * 119.99817 * 353.25592 * 8 7 6 11 11 C 1.46505 * 120.00345 * 354.61120 * 10 8 7 12 12 C 1.46506 * 120.00189 * 174.61869 * 10 8 7 13 13 C 1.52997 * 109.47078 * 89.99239 * 12 10 8 14 14 O 1.42897 * 109.46899 * 65.01004 * 13 12 10 15 15 C 1.42908 * 113.99979 * 179.97438 * 14 13 12 16 16 C 1.52995 * 109.47234 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46929 * 64.99794 * 16 15 14 18 18 C 1.36935 * 119.99854 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00228 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00120 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00454 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99804 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47406 * 89.99695 * 22 20 18 24 24 H 1.48496 * 109.46870 * 210.00003 * 22 20 18 25 25 H 1.48505 * 109.46883 * 329.99739 * 22 20 18 26 26 C 1.39409 * 119.99597 * 0.28169 * 7 6 5 27 27 N 1.32047 * 119.98443 * 359.42502 * 26 7 6 28 28 H 1.09001 * 109.47433 * 240.00293 * 1 2 3 29 29 H 1.09003 * 109.46810 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47039 * 120.00010 * 1 2 3 31 31 H 1.09006 * 109.46772 * 269.99851 * 3 2 1 32 32 H 1.09006 * 109.46864 * 29.99535 * 3 2 1 33 33 H 1.08998 * 109.47194 * 150.00188 * 3 2 1 34 34 H 1.08000 * 119.98814 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.46793 * 85.05622 * 11 10 8 36 36 H 1.09000 * 109.47011 * 205.04542 * 11 10 8 37 37 H 1.08991 * 109.46816 * 325.05533 * 11 10 8 38 38 H 1.08998 * 109.47582 * 210.00134 * 12 10 8 39 39 H 1.09001 * 109.46380 * 329.99716 * 12 10 8 40 40 H 1.08999 * 109.46917 * 185.00435 * 13 12 10 41 41 H 1.09001 * 109.47182 * 305.00330 * 13 12 10 42 42 H 1.09001 * 109.46710 * 299.99972 * 15 14 13 43 43 H 1.09001 * 109.47126 * 59.99576 * 15 14 13 44 44 H 1.08997 * 109.47395 * 184.99864 * 16 15 14 45 45 H 1.08996 * 109.47413 * 305.00172 * 16 15 14 46 46 H 0.96996 * 119.99877 * 0.02562 * 17 16 15 47 47 H 0.96994 * 120.00262 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.00475 * 179.72267 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1569 -1.1986 0.0005 5 6 1.4615 -2.4078 -0.1045 6 7 2.1184 -3.5464 -0.1045 7 6 3.4475 -3.5491 -0.0040 8 6 4.1860 -4.8296 -0.0034 9 8 5.4013 -4.8302 -0.0306 10 7 3.5121 -5.9962 0.0326 11 6 2.0555 -5.9962 0.1902 12 6 4.2360 -7.2644 -0.0857 13 6 4.6432 -7.7510 1.3065 14 8 3.4717 -8.0541 2.0665 15 6 3.7420 -8.5205 3.3900 16 6 2.4225 -8.8117 4.1076 17 7 1.7370 -9.9201 3.4385 18 6 0.5283 -10.3607 3.9075 19 1 0.0801 -9.8908 4.7705 20 6 -0.1215 -11.4106 3.2733 21 7 -1.2835 -11.8338 3.7238 22 14 0.6534 -12.2230 1.7802 23 1 1.5148 -13.3495 2.2208 24 1 -0.4151 -12.7371 0.8862 25 1 1.4764 -11.2280 1.0467 26 6 4.1405 -2.3446 0.1072 27 7 3.4808 -1.2007 0.1014 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 2.3792 1.5833 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1500 1.1384 0.5138 34 1 0.3846 -2.4058 -0.1864 35 1 1.5846 -5.8755 -0.7853 36 1 1.7380 -6.9405 0.6325 37 1 1.7605 -5.1728 0.8406 38 1 3.5926 -8.0075 -0.5567 39 1 5.1281 -7.1179 -0.6947 40 1 5.2574 -8.6466 1.2130 41 1 5.2126 -6.9710 1.8119 42 1 4.3374 -9.4321 3.3394 43 1 4.2929 -7.7567 3.9389 44 1 2.6245 -9.0820 5.1440 45 1 1.7904 -7.9241 4.0802 46 1 2.1398 -10.3424 2.6637 47 1 -1.7373 -12.5677 3.2808 48 1 5.2171 -2.3469 0.1932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677489046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:27 Heat of formation + Delta-G solvation = 21.122328 kcal Electronic energy + Delta-G solvation = -29128.508812 eV Core-core repulsion = 25027.952283 eV Total energy + Delta-G solvation = -4100.556529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.56223 -39.67216 -37.84130 -37.32187 -35.71520 -34.63220 -34.20838 -31.72205 -31.31164 -29.91912 -28.94929 -28.00711 -26.95723 -25.97588 -24.55003 -23.54644 -23.21935 -22.32244 -21.08274 -20.03485 -18.24730 -17.89798 -17.57991 -17.23539 -16.53740 -16.24636 -16.08847 -15.64302 -15.45143 -15.22060 -14.90775 -14.64908 -14.47168 -14.14047 -13.86648 -13.51533 -13.20265 -13.15002 -13.02595 -12.89294 -12.76197 -12.66278 -12.51921 -12.42331 -11.94294 -11.89600 -11.71093 -11.50566 -11.13236 -10.90474 -10.80888 -10.46779 -10.44876 -10.33221 -10.05248 -9.53877 -9.34461 -9.18499 -8.84830 -8.64472 -8.17282 -7.15207 -5.70638 -3.04829 0.37113 0.84760 2.23993 2.63063 2.94108 3.43553 3.48851 3.50705 3.60284 3.86869 3.92493 3.96145 4.05584 4.45447 4.62143 4.66317 4.69443 4.76989 4.91010 5.06808 5.09840 5.14469 5.16238 5.22819 5.32241 5.34089 5.42170 5.51775 5.59298 5.64803 5.67603 5.75665 5.78643 5.87414 5.94131 6.06549 6.16113 6.33365 6.50914 6.56184 6.59428 6.71066 7.04583 7.30697 7.50537 7.53667 8.05853 8.07119 8.48497 9.28877 10.01368 10.22679 11.47937 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002488 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.659887 B =11249.401276 C =12327.566144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.600 5.600 3 C 0.092 3.908 4 C 0.371 3.629 5 C -0.008 4.008 6 N -0.362 5.362 7 C -0.047 4.047 8 C 0.579 3.421 9 O -0.548 6.548 10 N -0.586 5.586 11 C 0.091 3.909 12 C 0.119 3.881 13 C 0.044 3.956 14 O -0.373 6.373 15 C 0.055 3.945 16 C 0.160 3.840 17 N -0.751 5.751 18 C -0.240 4.240 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.937 5.937 22 Si 0.884 3.116 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.273 1.273 26 C 0.171 3.829 27 N -0.510 5.510 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.171 0.829 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.033 0.967 46 H 0.364 0.636 47 H 0.258 0.742 48 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.407 26.476 -10.495 29.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.311 5.311 3 C -0.051 4.051 4 C 0.131 3.869 5 C -0.181 4.181 6 N -0.078 5.078 7 C -0.187 4.187 8 C 0.366 3.634 9 O -0.426 6.426 10 N -0.317 5.317 11 C -0.051 4.051 12 C -0.003 4.003 13 C -0.034 4.034 14 O -0.292 6.292 15 C -0.022 4.022 16 C 0.032 3.968 17 N -0.397 5.397 18 C -0.370 4.370 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.585 5.585 22 Si 0.714 3.286 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.199 1.199 26 C 0.009 3.991 27 N -0.232 5.232 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.188 0.812 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.197 0.803 47 H 0.068 0.932 48 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.571 26.621 -10.445 29.854 hybrid contribution 0.514 -0.627 -0.894 1.207 sum 9.085 25.994 -11.339 29.779 Atomic orbital electron populations 1.21875 0.77387 1.03823 1.02383 1.46238 1.05792 1.03067 1.76027 1.21750 0.97992 0.83541 1.01840 1.19636 0.89827 0.87583 0.89866 1.23316 1.01609 0.86689 1.06451 1.68734 1.07567 1.27490 1.04057 1.21626 0.90759 0.95467 1.10878 1.17581 0.86282 0.82730 0.76782 1.90766 1.12754 1.87025 1.52047 1.47619 1.09206 1.04897 1.69955 1.22142 0.77342 1.03929 1.01729 1.21605 0.98148 0.84695 0.95902 1.22878 0.88817 0.98968 0.92768 1.88001 1.29542 1.86040 1.25651 1.22828 0.98823 0.97246 0.83292 1.20661 0.90270 0.91631 0.94205 1.42631 1.23175 1.38799 1.35083 1.19072 0.94545 1.12511 1.10909 0.89334 1.24655 0.96696 0.98902 0.99044 1.69704 1.15862 1.30251 1.42700 0.86533 0.78534 0.79585 0.83943 1.21280 1.21851 1.19899 1.23457 1.01496 0.85903 0.88230 1.68108 1.06334 1.29502 1.19249 0.91525 0.89678 0.91624 0.92856 0.91217 0.89906 0.81234 0.92747 0.90191 0.89650 0.89206 0.88643 0.92656 0.93124 0.93496 0.93566 0.94240 0.94865 0.80328 0.93165 0.80273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 9.41 59.85 0.56 0.87 16 2 N -0.60 -3.98 3.37 -189.50 -0.64 -4.62 16 3 C 0.09 0.47 10.47 59.85 0.63 1.10 16 4 C 0.37 3.50 7.37 -155.01 -1.14 2.35 16 5 C -0.01 -0.08 10.49 -17.10 -0.18 -0.26 16 6 N -0.36 -4.25 6.33 -9.44 -0.06 -4.31 16 7 C -0.05 -0.60 6.55 -82.88 -0.54 -1.14 16 8 C 0.58 8.25 7.63 -12.34 -0.09 8.16 16 9 O -0.55 -8.68 15.99 5.31 0.08 -8.59 16 10 N -0.59 -8.10 2.84 -182.70 -0.52 -8.62 16 11 C 0.09 1.22 8.90 59.85 0.53 1.76 16 12 C 0.12 1.54 5.75 -4.04 -0.02 1.52 16 13 C 0.04 0.61 6.28 37.16 0.23 0.84 16 14 O -0.37 -6.35 9.21 -35.23 -0.32 -6.68 16 15 C 0.05 0.91 6.07 37.15 0.23 1.13 16 16 C 0.16 3.22 6.65 -4.04 -0.03 3.19 16 17 N -0.75 -18.57 5.35 -59.91 -0.32 -18.89 16 18 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 19 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 21 N -0.94 -29.91 13.97 55.49 0.78 -29.14 16 22 Si 0.88 22.62 27.74 -169.99 -4.71 17.91 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 25 H -0.27 -6.64 6.52 56.52 0.37 -6.27 16 26 C 0.17 1.94 10.76 -17.02 -0.18 1.76 16 27 N -0.51 -5.50 9.22 -11.96 -0.11 -5.61 16 28 H 0.07 0.22 8.11 -51.93 -0.42 -0.20 16 29 H 0.08 0.13 7.79 -51.93 -0.40 -0.27 16 30 H 0.07 0.18 7.74 -51.93 -0.40 -0.22 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.21 7.92 -51.93 -0.41 -0.20 16 33 H 0.08 0.54 7.30 -51.93 -0.38 0.16 16 34 H 0.17 1.11 6.71 -52.49 -0.35 0.76 16 35 H 0.05 0.67 8.01 -51.93 -0.42 0.26 16 36 H 0.08 1.23 7.22 -51.93 -0.37 0.85 16 37 H 0.09 1.16 5.75 -51.93 -0.30 0.86 16 38 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 39 H 0.10 1.14 7.51 -51.93 -0.39 0.75 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.36 8.89 5.53 -40.82 -0.23 8.67 16 47 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 48 H 0.18 1.81 7.65 -52.49 -0.40 1.41 16 LS Contribution 395.70 15.07 5.96 5.96 Total: -1.00 -36.25 395.70 -7.57 -43.82 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.45 Total: 4.66 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: -0.26 Total: 14.10 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -0.87 Total: -71.19 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.24 Total: -15.27 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.25 -7.57 -43.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677489046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.942 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds