Wall clock time and date at job start Tue Mar 31 2020 21:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00226 * 2 1 4 4 C 1.38395 * 119.99856 * 179.97438 * 2 1 3 5 5 C 1.39889 * 120.00148 * 4.99984 * 4 2 1 6 6 N 1.31453 * 120.01850 * 179.97438 * 5 4 2 7 7 C 1.33283 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.47821 * 120.00018 * 179.97438 * 7 6 5 9 9 O 1.21561 * 119.99687 * 173.52477 * 8 7 6 10 10 N 1.34770 * 119.99817 * 353.25592 * 8 7 6 11 11 C 1.46505 * 120.00345 * 354.61120 * 10 8 7 12 12 C 1.46506 * 120.00189 * 174.61869 * 10 8 7 13 13 C 1.52997 * 109.47078 * 89.99239 * 12 10 8 14 14 O 1.42897 * 109.46899 * 65.01004 * 13 12 10 15 15 C 1.42908 * 113.99979 * 179.97438 * 14 13 12 16 16 C 1.52995 * 109.47234 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46929 * 64.99794 * 16 15 14 18 18 C 1.36935 * 119.99854 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00228 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00120 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00454 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99804 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47406 * 89.99695 * 22 20 18 24 24 H 1.48496 * 109.46870 * 210.00003 * 22 20 18 25 25 H 1.48505 * 109.46883 * 329.99739 * 22 20 18 26 26 C 1.39409 * 119.99597 * 0.28169 * 7 6 5 27 27 N 1.32047 * 119.98443 * 359.42502 * 26 7 6 28 28 H 1.09001 * 109.47433 * 240.00293 * 1 2 3 29 29 H 1.09003 * 109.46810 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47039 * 120.00010 * 1 2 3 31 31 H 1.09006 * 109.46772 * 269.99851 * 3 2 1 32 32 H 1.09006 * 109.46864 * 29.99535 * 3 2 1 33 33 H 1.08998 * 109.47194 * 150.00188 * 3 2 1 34 34 H 1.08000 * 119.98814 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.46793 * 85.05622 * 11 10 8 36 36 H 1.09000 * 109.47011 * 205.04542 * 11 10 8 37 37 H 1.08991 * 109.46816 * 325.05533 * 11 10 8 38 38 H 1.08998 * 109.47582 * 210.00134 * 12 10 8 39 39 H 1.09001 * 109.46380 * 329.99716 * 12 10 8 40 40 H 1.08999 * 109.46917 * 185.00435 * 13 12 10 41 41 H 1.09001 * 109.47182 * 305.00330 * 13 12 10 42 42 H 1.09001 * 109.46710 * 299.99972 * 15 14 13 43 43 H 1.09001 * 109.47126 * 59.99576 * 15 14 13 44 44 H 1.08997 * 109.47395 * 184.99864 * 16 15 14 45 45 H 1.08996 * 109.47413 * 305.00172 * 16 15 14 46 46 H 0.96996 * 119.99877 * 0.02562 * 17 16 15 47 47 H 0.96994 * 120.00262 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.00475 * 179.72267 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1569 -1.1986 0.0005 5 6 1.4615 -2.4078 -0.1045 6 7 2.1184 -3.5464 -0.1045 7 6 3.4475 -3.5491 -0.0040 8 6 4.1860 -4.8296 -0.0034 9 8 5.4013 -4.8302 -0.0306 10 7 3.5121 -5.9962 0.0326 11 6 2.0555 -5.9962 0.1902 12 6 4.2360 -7.2644 -0.0857 13 6 4.6432 -7.7510 1.3065 14 8 3.4717 -8.0541 2.0665 15 6 3.7420 -8.5205 3.3900 16 6 2.4225 -8.8117 4.1076 17 7 1.7370 -9.9201 3.4385 18 6 0.5283 -10.3607 3.9075 19 1 0.0801 -9.8908 4.7705 20 6 -0.1215 -11.4106 3.2733 21 7 -1.2835 -11.8338 3.7238 22 14 0.6534 -12.2230 1.7802 23 1 1.5148 -13.3495 2.2208 24 1 -0.4151 -12.7371 0.8862 25 1 1.4764 -11.2280 1.0467 26 6 4.1405 -2.3446 0.1072 27 7 3.4808 -1.2007 0.1014 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 2.3792 1.5833 -1.0277 32 1 1.6084 2.0284 0.5138 33 1 3.1500 1.1384 0.5138 34 1 0.3846 -2.4058 -0.1864 35 1 1.5846 -5.8755 -0.7853 36 1 1.7380 -6.9405 0.6325 37 1 1.7605 -5.1728 0.8406 38 1 3.5926 -8.0075 -0.5567 39 1 5.1281 -7.1179 -0.6947 40 1 5.2574 -8.6466 1.2130 41 1 5.2126 -6.9710 1.8119 42 1 4.3374 -9.4321 3.3394 43 1 4.2929 -7.7567 3.9389 44 1 2.6245 -9.0820 5.1440 45 1 1.7904 -7.9241 4.0802 46 1 2.1398 -10.3424 2.6637 47 1 -1.7373 -12.5677 3.2808 48 1 5.2171 -2.3469 0.1932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677489046.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:26 Heat of formation + Delta-G solvation = -4.475817 kcal Electronic energy + Delta-G solvation = -29129.618831 eV Core-core repulsion = 25027.952283 eV Total energy + Delta-G solvation = -4101.666547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.35627 -40.66214 -39.06901 -37.96778 -36.94256 -36.27446 -35.11218 -33.63580 -32.30850 -31.10525 -29.58962 -29.34351 -27.82242 -26.87173 -25.31695 -25.19415 -24.38466 -23.09884 -22.80981 -21.00254 -19.73504 -19.07342 -18.53783 -18.17536 -17.67341 -17.30774 -16.98372 -16.81724 -16.45912 -16.24913 -16.01104 -15.77907 -15.42677 -15.32878 -15.07642 -14.76517 -14.56014 -14.28731 -14.17830 -13.84159 -13.76526 -13.58891 -13.48720 -13.28535 -13.10242 -12.86704 -12.83142 -12.78545 -12.51517 -12.42068 -12.16070 -11.95213 -11.81463 -11.69027 -11.38216 -11.12404 -10.99378 -10.53695 -10.04654 -9.70146 -9.27345 -8.80371 -8.00331 -5.33022 -0.44902 0.07354 1.40750 1.43671 1.52403 1.66495 1.69211 1.97417 2.51562 2.72670 2.79275 3.03468 3.22410 3.31641 3.38063 3.67702 3.70291 4.01428 4.05275 4.14456 4.21066 4.28155 4.40820 4.43512 4.45422 4.48657 4.49988 4.51880 4.56711 4.62134 4.73000 4.78107 4.87453 4.90547 4.91485 4.98768 5.03826 5.11020 5.27950 5.50928 5.64618 5.76604 5.94117 6.21258 6.24832 6.31731 6.36626 6.73344 7.04077 7.10429 7.86496 8.07416 9.21227 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002488 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.659887 B =11249.401276 C =12327.566144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.592 5.592 3 C 0.087 3.913 4 C 0.369 3.631 5 C -0.005 4.005 6 N -0.377 5.377 7 C -0.076 4.076 8 C 0.577 3.423 9 O -0.572 6.572 10 N -0.591 5.591 11 C 0.103 3.897 12 C 0.117 3.883 13 C 0.045 3.955 14 O -0.395 6.395 15 C 0.064 3.936 16 C 0.155 3.845 17 N -0.752 5.752 18 C -0.234 4.234 19 H 0.056 0.944 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.956 3.044 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.251 1.251 26 C 0.172 3.828 27 N -0.525 5.525 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.199 0.801 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.023 0.977 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.960 27.904 -11.835 31.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.302 5.302 3 C -0.055 4.055 4 C 0.126 3.874 5 C -0.179 4.179 6 N -0.092 5.092 7 C -0.214 4.214 8 C 0.365 3.635 9 O -0.452 6.452 10 N -0.320 5.320 11 C -0.039 4.039 12 C -0.005 4.005 13 C -0.032 4.032 14 O -0.315 6.315 15 C -0.013 4.013 16 C 0.028 3.972 17 N -0.399 5.399 18 C -0.364 4.364 19 H 0.074 0.926 20 C -0.256 4.256 21 N -0.635 5.635 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.176 1.176 26 C 0.011 3.989 27 N -0.248 5.248 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.215 0.785 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.201 0.799 47 H 0.067 0.933 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.156 28.098 -11.777 31.813 hybrid contribution 0.221 -0.819 -0.403 0.939 sum 9.377 27.280 -12.180 31.312 Atomic orbital electron populations 1.22180 0.75264 1.05774 1.03119 1.46644 1.07177 1.02575 1.73778 1.21888 0.97810 0.83447 1.02394 1.19929 0.89621 0.88805 0.89026 1.23770 1.02734 0.86082 1.05288 1.68634 1.07288 1.28713 1.04605 1.21401 0.91278 0.94962 1.13778 1.17828 0.86141 0.83319 0.76167 1.90732 1.13671 1.87459 1.53340 1.47704 1.09278 1.05205 1.69858 1.21999 0.77386 1.02559 1.01988 1.21695 0.98647 0.84519 0.95676 1.22979 0.87989 0.99670 0.92562 1.87968 1.31346 1.86240 1.25916 1.22691 0.96552 0.98675 0.83379 1.20827 0.91738 0.89686 0.94909 1.42624 1.22007 1.39857 1.35377 1.19055 0.95828 1.11903 1.09663 0.92619 1.25503 0.97374 1.00003 1.02727 1.69884 1.17781 1.31211 1.44661 0.85377 0.77681 0.78811 0.79787 1.20436 1.22201 1.17584 1.23488 1.01739 0.85859 0.87855 1.68154 1.07175 1.29086 1.20402 0.91021 0.87274 0.90553 0.92266 0.88490 0.91493 0.78464 0.91810 0.92195 0.89924 0.88682 0.87677 0.90697 0.93598 0.92299 0.91029 0.93441 0.95875 0.79901 0.93348 0.79986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 9.41 127.77 1.20 1.49 16 2 N -0.59 -6.46 3.37 -753.46 -2.54 -9.00 16 3 C 0.09 0.71 10.47 127.77 1.34 2.05 16 4 C 0.37 6.43 7.37 133.34 0.98 7.41 16 5 C 0.00 -0.08 10.49 85.15 0.89 0.81 16 6 N -0.38 -8.60 6.33 -183.79 -1.16 -9.77 16 7 C -0.08 -1.92 6.55 41.74 0.27 -1.64 16 8 C 0.58 16.48 7.63 86.78 0.66 17.15 16 9 O -0.57 -18.24 15.99 -3.91 -0.06 -18.30 16 10 N -0.59 -16.05 2.84 -850.22 -2.41 -18.46 16 11 C 0.10 2.74 8.90 127.77 1.14 3.88 16 12 C 0.12 2.89 5.75 86.38 0.50 3.38 16 13 C 0.05 1.18 6.28 71.98 0.45 1.63 16 14 O -0.39 -12.78 9.21 -148.98 -1.37 -14.15 16 15 C 0.06 1.96 6.07 71.98 0.44 2.40 16 16 C 0.15 6.09 6.65 86.38 0.57 6.66 16 17 N -0.75 -36.54 5.35 -343.46 -1.84 -38.38 16 18 C -0.23 -13.72 10.47 84.03 0.88 -12.84 16 19 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 20 C -0.06 -3.90 5.50 84.86 0.47 -3.44 16 21 N -0.98 -64.09 13.97 21.65 0.30 -63.79 16 22 Si 0.96 46.50 27.74 68.60 1.90 48.40 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 26 C 0.17 3.94 10.76 84.94 0.91 4.86 16 27 N -0.52 -11.07 9.22 -191.74 -1.77 -12.84 16 28 H 0.07 0.25 8.11 -2.39 -0.02 0.23 16 29 H 0.11 -0.08 7.79 -2.39 -0.02 -0.10 16 30 H 0.08 0.17 7.74 -2.39 -0.02 0.15 16 31 H 0.06 0.44 8.14 -2.38 -0.02 0.43 16 32 H 0.10 0.28 7.92 -2.38 -0.02 0.26 16 33 H 0.07 0.80 7.30 -2.39 -0.02 0.78 16 34 H 0.20 2.09 6.71 -2.91 -0.02 2.07 16 35 H 0.06 1.54 8.01 -2.39 -0.02 1.52 16 36 H 0.06 1.82 7.22 -2.39 -0.02 1.81 16 37 H 0.08 2.24 5.75 -2.39 -0.01 2.23 16 38 H 0.09 2.23 8.07 -2.39 -0.02 2.21 16 39 H 0.11 2.38 7.51 -2.39 -0.02 2.37 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.37 17.21 5.53 -92.71 -0.51 16.70 16 47 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 48 H 0.18 3.82 7.65 -2.91 -0.02 3.80 16 Total: -1.00 -79.08 395.70 2.15 -76.92 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.40 Total: 25.56 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: 10.71 Total: 33.80 kcal Atomic # 7 Polarization: -142.81 SS G_CDS: -9.42 Total: -152.24 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.43 Total: -32.45 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.40 kcal Total: -79.08 2.15 -76.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677489046.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.447 kcal (2) G-P(sol) polarization free energy of solvation -79.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds