Wall clock time and date at job start Tue Mar 31 2020 20:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 111.00065 * 2 1 4 4 C 1.53002 * 109.47515 * 66.04745 * 3 2 1 5 5 C 1.52996 * 109.47250 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46827 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99825 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00298 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00041 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47490 * 179.97438 * 9 7 6 11 11 C 1.39866 * 125.89915 * 125.01392 * 10 9 7 12 12 C 1.35320 * 107.91898 * 179.97438 * 11 10 9 13 13 N 1.34951 * 107.74569 * 359.97438 * 12 11 10 14 14 C 1.46504 * 126.03463 * 180.02562 * 13 12 11 15 15 N 1.30844 * 125.89476 * 304.97479 * 10 9 7 16 16 C 1.46904 * 110.99635 * 236.04690 * 2 1 3 17 17 C 1.50700 * 109.47072 * 293.95507 * 16 2 1 18 18 O 1.21294 * 119.99870 * 359.97438 * 17 16 2 19 19 N 1.34772 * 119.99737 * 180.02562 * 17 16 2 20 20 C 1.37098 * 120.00003 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99815 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00408 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99957 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00239 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47240 * 89.99961 * 24 22 20 26 26 H 1.48496 * 109.47097 * 210.00259 * 24 22 20 27 27 H 1.48496 * 109.47169 * 329.99695 * 24 22 20 28 28 H 1.09004 * 109.47157 * 59.99849 * 1 2 3 29 29 H 1.08994 * 109.47369 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47047 * 300.00536 * 1 2 3 31 31 H 1.09010 * 109.47285 * 306.04602 * 3 2 1 32 32 H 1.09000 * 109.47449 * 186.05171 * 3 2 1 33 33 H 1.09002 * 109.46684 * 59.99632 * 4 3 2 34 34 H 1.09001 * 109.46662 * 300.00345 * 4 3 2 35 35 H 1.09002 * 109.47478 * 60.00240 * 5 4 3 36 36 H 1.09004 * 109.47167 * 299.99874 * 5 4 3 37 37 H 0.96995 * 119.99848 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.46974 * 59.99026 * 9 7 6 39 39 H 1.09000 * 109.47028 * 299.99901 * 9 7 6 40 40 H 1.07993 * 126.04141 * 359.97438 * 11 10 9 41 41 H 1.07996 * 126.12765 * 180.02562 * 12 11 10 42 42 H 1.09005 * 109.46927 * 270.02579 * 14 13 12 43 43 H 1.08994 * 109.47314 * 30.02415 * 14 13 12 44 44 H 1.08998 * 109.46715 * 150.02896 * 14 13 12 45 45 H 1.08994 * 109.47264 * 53.95470 * 16 2 1 46 46 H 1.09002 * 109.46985 * 173.95343 * 16 2 1 47 47 H 0.96998 * 120.00766 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00457 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0575 1.3183 5 6 2.1805 3.4856 1.3185 6 7 1.8325 4.1422 2.5810 7 6 2.2141 5.4151 2.8061 8 8 2.8460 6.0167 1.9637 9 6 1.8567 6.0904 4.1050 10 6 2.3972 7.4971 4.1053 11 6 1.6535 8.6614 4.3236 12 6 2.4979 9.7158 4.2439 13 7 3.7322 9.2357 3.9849 14 6 4.9500 10.0332 3.8196 15 7 3.6434 7.8402 3.9020 16 6 1.9954 -0.7660 -1.1377 17 6 1.6368 -2.2204 -0.9729 18 8 1.0053 -2.5832 -0.0030 19 7 2.0187 -3.1181 -1.9028 20 6 1.6921 -4.4411 -1.7533 21 1 1.1290 -4.7641 -0.8900 22 6 2.0853 -5.3666 -2.7122 23 7 2.7698 -4.9736 -3.7628 24 14 1.6408 -7.1694 -2.5080 25 1 0.3285 -7.4317 -3.1517 26 1 2.6831 -8.0117 -3.1478 27 1 1.5575 -7.4981 -1.0623 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9274 -0.8310 32 1 3.0798 1.3444 -0.1083 33 1 2.0659 1.5015 2.1491 34 1 0.5473 2.0844 1.4265 35 1 1.7465 4.0418 0.4876 36 1 3.2648 3.4581 1.2104 37 1 1.3268 3.6612 3.2546 38 1 2.2917 5.5342 4.9354 39 1 0.7725 6.1174 4.2142 40 1 0.5929 8.7102 4.5209 41 1 2.2318 10.7553 4.3665 42 1 5.0680 10.3029 2.7700 43 1 4.8757 10.9390 4.4213 44 1 5.8124 9.4510 4.1443 45 1 1.5611 -0.3873 -2.0628 46 1 3.0797 -0.6611 -1.1757 47 1 2.5240 -2.8280 -2.6783 48 1 3.0441 -5.6195 -4.4325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689802226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:12 Heat of formation + Delta-G solvation = 12.840306 kcal Electronic energy + Delta-G solvation = -27295.670333 eV Core-core repulsion = 23194.754669 eV Total energy + Delta-G solvation = -4100.915664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50813 -39.69784 -38.64022 -36.90817 -35.17587 -34.16702 -33.83525 -31.88011 -31.21327 -30.67368 -29.90138 -27.83413 -26.70689 -25.78185 -24.63674 -22.76092 -21.51465 -21.27121 -20.73169 -19.71970 -19.11771 -17.81899 -17.33775 -17.17452 -16.38221 -16.11247 -15.79099 -15.70208 -15.28274 -14.95999 -14.64472 -14.45132 -14.36421 -14.01972 -13.85595 -13.56036 -13.47963 -13.33845 -13.15843 -12.88405 -12.72184 -12.47383 -12.15562 -12.05670 -11.80691 -11.65816 -11.45160 -11.22716 -11.21211 -10.90013 -10.86408 -10.68020 -10.37506 -10.19953 -10.04514 -9.52645 -9.45698 -9.23245 -8.86573 -8.42669 -7.95515 -7.82604 -6.39606 -3.80393 1.60567 2.19479 2.39342 2.50462 3.06769 3.19198 3.27796 3.33758 3.93101 4.02229 4.07297 4.26752 4.39768 4.48958 4.67820 4.75921 4.83240 4.87720 5.00712 5.02938 5.05918 5.10008 5.13191 5.27725 5.32456 5.45652 5.47276 5.56857 5.63396 5.68974 5.74231 5.77176 5.96257 6.01255 6.04873 6.13310 6.26916 6.30303 6.31381 6.58032 6.69133 7.28600 7.31056 7.42456 7.45184 7.57152 8.07166 8.08755 8.64330 9.20363 9.57055 10.09012 10.78183 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040710 B = 0.001329 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.632943 B =21066.142096 C =21426.977475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.127 4.127 5 C 0.122 3.878 6 N -0.731 5.731 7 C 0.513 3.487 8 O -0.524 6.524 9 C -0.059 4.059 10 C 0.081 3.919 11 C -0.267 4.267 12 C 0.049 3.951 13 N -0.377 5.377 14 C 0.102 3.898 15 N -0.263 5.263 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.013 0.987 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.148 0.852 41 H 0.173 0.827 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 29.846 14.820 33.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.165 4.165 5 C -0.002 4.002 6 N -0.384 5.384 7 C 0.298 3.702 8 O -0.399 6.399 9 C -0.101 4.101 10 C -0.086 4.086 11 C -0.296 4.296 12 C -0.096 4.096 13 N -0.159 5.159 14 C -0.040 4.040 15 N -0.085 5.085 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.032 0.968 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.165 0.835 41 H 0.190 0.810 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.856 29.390 14.849 32.940 hybrid contribution -1.154 -0.134 -0.837 1.432 sum -0.298 29.257 14.013 32.441 Atomic orbital electron populations 1.22574 0.86888 1.04398 0.98880 1.61548 1.08659 1.11280 1.42786 1.22009 1.00449 0.88898 0.95770 1.21772 1.01720 0.93513 0.99485 1.21309 1.00649 0.92589 0.85681 1.45973 1.58341 1.13786 1.20316 1.20378 0.79481 0.81553 0.88776 1.90754 1.38526 1.64202 1.46451 1.20022 1.02801 0.90195 0.97058 1.21511 0.91476 0.95143 1.00486 1.21343 1.00938 0.90841 1.16495 1.22502 0.85215 1.00113 1.01814 1.48550 1.07543 1.04984 1.54858 1.21850 0.84810 0.94293 1.02996 1.77440 1.19672 0.89195 1.22234 1.21865 1.00706 0.94124 0.91876 1.19745 0.85399 0.86668 0.85216 1.90478 1.43968 1.80169 1.31617 1.41868 1.49421 1.07360 1.21489 1.19699 1.32889 0.82323 1.07928 0.87921 1.25251 0.96817 1.00537 0.95320 1.69612 1.38082 1.35765 1.10901 0.85863 0.77988 0.81796 0.78671 1.20461 1.20949 1.19411 0.96831 0.88657 0.92094 0.94928 0.90617 0.90155 0.91100 0.91657 0.91364 0.76438 0.87165 0.86863 0.83462 0.80993 0.90708 0.89520 0.89268 0.93475 0.89381 0.77492 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.96 60.07 0.54 0.86 16 2 N -0.52 -8.56 4.50 -244.36 -1.10 -9.66 16 3 C 0.06 0.72 4.96 -3.83 -0.02 0.70 16 4 C -0.13 -1.28 5.25 -26.73 -0.14 -1.42 16 5 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 6 N -0.73 -6.28 5.56 -60.29 -0.33 -6.61 16 7 C 0.51 5.52 7.82 -10.98 -0.09 5.44 16 8 O -0.52 -8.17 15.56 5.56 0.09 -8.09 16 9 C -0.06 -0.44 6.28 -29.04 -0.18 -0.62 16 10 C 0.08 0.85 6.01 -82.41 -0.50 0.35 16 11 C -0.27 -2.22 10.72 -40.01 -0.43 -2.65 16 12 C 0.05 0.36 11.49 -17.22 -0.20 0.17 16 13 N -0.38 -3.49 4.01 -68.16 -0.27 -3.76 16 14 C 0.10 0.51 11.47 59.85 0.69 1.20 16 15 N -0.26 -3.30 11.92 33.67 0.40 -2.89 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 17 C 0.44 10.52 7.47 -10.99 -0.08 10.44 16 18 O -0.58 -15.52 13.91 5.54 0.08 -15.45 16 19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 1.87 5.82 -51.93 -0.30 1.57 16 30 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 31 H 0.03 0.39 8.12 -51.92 -0.42 -0.03 16 32 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.40 2.26 8.47 -40.82 -0.35 1.91 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 0.49 8.12 -51.93 -0.42 0.06 16 40 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.17 0.58 8.06 -52.49 -0.42 0.15 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 46 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 47 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -38.06 403.58 -7.59 -45.65 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.47 Total: 8.57 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -0.70 Total: 8.45 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.64 Total: -61.29 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.16 Total: -23.53 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.06 -7.59 -45.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689802226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.493 kcal (2) G-P(sol) polarization free energy of solvation -38.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds