Wall clock time and date at job start Tue Mar 31 2020 20:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 111.00065 * 2 1 4 4 C 1.53002 * 109.47515 * 66.04745 * 3 2 1 5 5 C 1.52996 * 109.47250 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.46827 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99825 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00298 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00041 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47490 * 179.97438 * 9 7 6 11 11 C 1.39866 * 125.89915 * 125.01392 * 10 9 7 12 12 C 1.35320 * 107.91898 * 179.97438 * 11 10 9 13 13 N 1.34951 * 107.74569 * 359.97438 * 12 11 10 14 14 C 1.46504 * 126.03463 * 180.02562 * 13 12 11 15 15 N 1.30844 * 125.89476 * 304.97479 * 10 9 7 16 16 C 1.46904 * 110.99635 * 236.04690 * 2 1 3 17 17 C 1.50700 * 109.47072 * 293.95507 * 16 2 1 18 18 O 1.21294 * 119.99870 * 359.97438 * 17 16 2 19 19 N 1.34772 * 119.99737 * 180.02562 * 17 16 2 20 20 C 1.37098 * 120.00003 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99815 * 359.97438 * 20 19 17 22 22 C 1.38943 * 120.00408 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99957 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00239 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47240 * 89.99961 * 24 22 20 26 26 H 1.48496 * 109.47097 * 210.00259 * 24 22 20 27 27 H 1.48496 * 109.47169 * 329.99695 * 24 22 20 28 28 H 1.09004 * 109.47157 * 59.99849 * 1 2 3 29 29 H 1.08994 * 109.47369 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47047 * 300.00536 * 1 2 3 31 31 H 1.09010 * 109.47285 * 306.04602 * 3 2 1 32 32 H 1.09000 * 109.47449 * 186.05171 * 3 2 1 33 33 H 1.09002 * 109.46684 * 59.99632 * 4 3 2 34 34 H 1.09001 * 109.46662 * 300.00345 * 4 3 2 35 35 H 1.09002 * 109.47478 * 60.00240 * 5 4 3 36 36 H 1.09004 * 109.47167 * 299.99874 * 5 4 3 37 37 H 0.96995 * 119.99848 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.46974 * 59.99026 * 9 7 6 39 39 H 1.09000 * 109.47028 * 299.99901 * 9 7 6 40 40 H 1.07993 * 126.04141 * 359.97438 * 11 10 9 41 41 H 1.07996 * 126.12765 * 180.02562 * 12 11 10 42 42 H 1.09005 * 109.46927 * 270.02579 * 14 13 12 43 43 H 1.08994 * 109.47314 * 30.02415 * 14 13 12 44 44 H 1.08998 * 109.46715 * 150.02896 * 14 13 12 45 45 H 1.08994 * 109.47264 * 53.95470 * 16 2 1 46 46 H 1.09002 * 109.46985 * 173.95343 * 16 2 1 47 47 H 0.96998 * 120.00766 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00457 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0575 1.3183 5 6 2.1805 3.4856 1.3185 6 7 1.8325 4.1422 2.5810 7 6 2.2141 5.4151 2.8061 8 8 2.8460 6.0167 1.9637 9 6 1.8567 6.0904 4.1050 10 6 2.3972 7.4971 4.1053 11 6 1.6535 8.6614 4.3236 12 6 2.4979 9.7158 4.2439 13 7 3.7322 9.2357 3.9849 14 6 4.9500 10.0332 3.8196 15 7 3.6434 7.8402 3.9020 16 6 1.9954 -0.7660 -1.1377 17 6 1.6368 -2.2204 -0.9729 18 8 1.0053 -2.5832 -0.0030 19 7 2.0187 -3.1181 -1.9028 20 6 1.6921 -4.4411 -1.7533 21 1 1.1290 -4.7641 -0.8900 22 6 2.0853 -5.3666 -2.7122 23 7 2.7698 -4.9736 -3.7628 24 14 1.6408 -7.1694 -2.5080 25 1 0.3285 -7.4317 -3.1517 26 1 2.6831 -8.0117 -3.1478 27 1 1.5575 -7.4981 -1.0623 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9274 -0.8310 32 1 3.0798 1.3444 -0.1083 33 1 2.0659 1.5015 2.1491 34 1 0.5473 2.0844 1.4265 35 1 1.7465 4.0418 0.4876 36 1 3.2648 3.4581 1.2104 37 1 1.3268 3.6612 3.2546 38 1 2.2917 5.5342 4.9354 39 1 0.7725 6.1174 4.2142 40 1 0.5929 8.7102 4.5209 41 1 2.2318 10.7553 4.3665 42 1 5.0680 10.3029 2.7700 43 1 4.8757 10.9390 4.4213 44 1 5.8124 9.4510 4.1443 45 1 1.5611 -0.3873 -2.0628 46 1 3.0797 -0.6611 -1.1757 47 1 2.5240 -2.8280 -2.6783 48 1 3.0441 -5.6195 -4.4325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689802226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:09 Heat of formation + Delta-G solvation = -17.660215 kcal Electronic energy + Delta-G solvation = -27296.992935 eV Core-core repulsion = 23194.754669 eV Total energy + Delta-G solvation = -4102.238266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.10112 -40.55948 -40.31780 -38.25897 -36.23901 -35.75440 -34.75936 -33.27844 -32.76394 -31.27953 -30.57530 -29.31235 -27.64573 -26.80064 -26.14844 -23.92769 -22.17183 -22.02774 -21.65681 -20.95897 -20.41096 -19.83482 -17.95834 -17.91665 -17.77129 -16.99833 -16.95515 -16.56561 -16.45651 -16.19961 -16.18696 -15.76972 -15.31539 -15.12144 -14.95067 -14.77707 -14.54812 -14.35597 -13.83003 -13.73045 -13.46827 -13.43287 -13.33583 -13.13458 -13.01555 -12.86788 -12.72891 -12.68533 -12.49574 -12.37693 -12.29666 -12.10890 -11.62140 -11.50108 -11.44060 -10.91684 -10.26235 -10.18233 -10.04513 -9.98306 -9.43810 -9.18396 -8.44908 -5.93574 1.02382 1.39034 1.42612 1.55471 1.70032 1.72711 1.79206 2.07437 2.27574 2.36038 2.84687 3.22098 3.44800 3.55924 3.91922 3.96281 3.99152 4.09714 4.15884 4.22684 4.35365 4.40559 4.42320 4.43495 4.50848 4.56008 4.58266 4.62813 4.66392 4.67422 4.78019 4.82200 4.85564 4.93080 5.11649 5.17097 5.22167 5.31729 5.42739 5.49884 5.73132 5.90248 6.09230 6.23044 6.24575 6.62296 6.62749 6.84043 7.14829 7.33472 7.58580 8.14401 8.72559 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040710 B = 0.001329 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.632943 B =21066.142096 C =21426.977475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.057 3.943 4 C -0.112 4.112 5 C 0.129 3.871 6 N -0.718 5.718 7 C 0.510 3.490 8 O -0.579 6.579 9 C -0.054 4.054 10 C 0.063 3.937 11 C -0.284 4.284 12 C 0.052 3.948 13 N -0.388 5.388 14 C 0.094 3.906 15 N -0.324 5.324 16 C 0.056 3.944 17 C 0.441 3.559 18 O -0.613 6.613 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.273 1.273 28 H 0.027 0.973 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.418 0.582 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.213 0.787 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 31.249 15.630 34.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.071 4.071 4 C -0.150 4.150 5 C 0.005 3.995 6 N -0.371 5.371 7 C 0.297 3.703 8 O -0.458 6.458 9 C -0.095 4.095 10 C -0.104 4.104 11 C -0.313 4.313 12 C -0.093 4.093 13 N -0.171 5.171 14 C -0.046 4.046 15 N -0.147 5.147 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.255 0.745 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.188 0.812 41 H 0.229 0.771 42 H 0.094 0.906 43 H 0.140 0.860 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.038 30.792 15.674 34.552 hybrid contribution -0.902 -0.472 -1.057 1.468 sum -0.864 30.320 14.617 33.671 Atomic orbital electron populations 1.22470 0.86806 1.02219 1.00800 1.61517 1.08960 1.13472 1.42169 1.22091 1.00721 0.86840 0.97428 1.21612 1.02261 0.93001 0.98116 1.21121 0.99757 0.92454 0.86205 1.45858 1.57760 1.13321 1.20203 1.20975 0.78386 0.81673 0.89268 1.90730 1.41101 1.65550 1.48461 1.20169 1.04957 0.88897 0.95507 1.22057 0.91393 0.96866 1.00059 1.21756 1.02253 0.90413 1.16921 1.23216 0.84374 1.01847 0.99911 1.48894 1.09154 1.04372 1.54679 1.22123 0.83605 0.95026 1.03857 1.77339 1.21373 0.91425 1.24593 1.21743 1.02037 0.90280 0.93425 1.20773 0.83693 0.88756 0.83896 1.90455 1.45134 1.81444 1.32888 1.41944 1.50073 1.07077 1.22195 1.19672 1.34361 0.84068 1.08103 0.90236 1.26028 0.96246 1.04317 0.94671 1.69676 1.38198 1.37192 1.11235 0.84929 0.78204 0.76810 0.78405 1.19630 1.19647 1.19732 0.95484 0.92782 0.89588 0.93792 0.90123 0.90380 0.90036 0.92305 0.92717 0.74454 0.85254 0.83311 0.81150 0.77082 0.90580 0.85974 0.89917 0.91649 0.87438 0.77102 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 8.96 127.69 1.14 1.91 16 2 N -0.54 -16.94 4.50 -927.03 -4.17 -21.12 16 3 C 0.06 1.31 4.96 86.31 0.43 1.73 16 4 C -0.11 -2.02 5.25 30.59 0.16 -1.86 16 5 C 0.13 2.41 5.67 86.38 0.49 2.90 16 6 N -0.72 -11.20 5.56 -463.06 -2.57 -13.78 16 7 C 0.51 10.61 7.82 87.66 0.69 11.29 16 8 O -0.58 -18.43 15.56 -3.02 -0.05 -18.48 16 9 C -0.05 -0.73 6.28 29.10 0.18 -0.55 16 10 C 0.06 1.27 6.01 43.10 0.26 1.53 16 11 C -0.28 -4.29 10.72 21.99 0.24 -4.05 16 12 C 0.05 0.68 11.49 83.54 0.96 1.64 16 13 N -0.39 -6.99 4.01 -369.56 -1.48 -8.47 16 14 C 0.09 0.88 11.47 127.77 1.47 2.35 16 15 N -0.32 -8.25 11.92 -47.39 -0.56 -8.81 16 16 C 0.06 1.98 5.45 85.56 0.47 2.44 16 17 C 0.44 21.17 7.47 87.66 0.66 21.83 16 18 O -0.61 -33.77 13.91 -3.07 -0.04 -33.81 16 19 N -0.58 -29.83 5.29 -306.99 -1.62 -31.46 16 20 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 24 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 28 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.05 2.14 5.82 -2.39 -0.01 2.12 16 30 H 0.09 2.15 6.47 -2.39 -0.02 2.14 16 31 H 0.04 0.93 8.12 -2.38 -0.02 0.91 16 32 H 0.08 1.78 7.93 -2.39 -0.02 1.76 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.33 6.55 -2.39 -0.02 1.31 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.42 3.67 8.47 -92.71 -0.79 2.89 16 38 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.15 0.84 8.12 -2.39 -0.02 0.82 16 40 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.21 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 46 H 0.11 3.35 7.93 -2.39 -0.02 3.34 16 47 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 48 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 Total: -1.00 -86.07 403.58 -0.31 -86.39 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.53 Total: 31.52 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 8.41 Total: 22.74 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -10.13 Total: -133.55 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -0.09 Total: -52.29 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -86.07 -0.31 -86.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689802226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.725 kcal (2) G-P(sol) polarization free energy of solvation -86.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds