Wall clock time and date at job start Tue Mar 31 2020 20:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.47179 * 2 1 4 4 C 1.46496 * 119.99683 * 269.99898 * 3 2 1 5 5 C 1.50699 * 109.47108 * 269.99583 * 4 3 2 6 6 H 1.08002 * 120.00014 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00261 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99791 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00182 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46889 * 90.00458 * 9 7 5 11 11 H 1.48503 * 109.47280 * 210.00288 * 9 7 5 12 12 H 1.48505 * 109.47011 * 330.00201 * 9 7 5 13 13 C 1.34775 * 119.99912 * 89.99445 * 3 2 1 14 14 O 1.21280 * 119.99620 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00361 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47397 * 179.97438 * 15 13 3 17 17 C 1.46898 * 111.00050 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.46967 * 180.02562 * 17 16 15 19 19 N 1.46506 * 109.46986 * 180.02562 * 18 17 16 20 20 C 1.46499 * 119.99805 * 269.72403 * 19 18 17 21 21 C 1.34771 * 119.99762 * 90.00251 * 19 18 17 22 22 O 1.21598 * 120.00581 * 356.05734 * 21 19 18 23 23 C 1.47409 * 119.99488 * 176.06155 * 21 19 18 24 24 N 1.31613 * 125.86683 * 5.61299 * 23 21 19 25 25 C 1.33104 * 109.09328 * 179.83373 * 24 23 21 26 26 C 1.35561 * 108.35041 * 0.43108 * 25 24 23 27 27 N 1.35395 * 107.16111 * 359.74422 * 26 25 24 28 28 H 0.97008 * 126.43956 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.46691 * 60.00138 * 1 2 3 30 30 H 1.09003 * 109.46717 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47419 * 300.00261 * 1 2 3 32 32 H 1.08998 * 109.47863 * 239.99628 * 2 1 3 33 33 H 1.09008 * 109.47285 * 119.99469 * 2 1 3 34 34 H 1.08999 * 109.47362 * 29.99571 * 4 3 2 35 35 H 1.09002 * 109.46795 * 150.00169 * 4 3 2 36 36 H 0.97007 * 119.99972 * 179.97438 * 8 7 5 37 37 H 1.09005 * 109.46777 * 59.99831 * 15 13 3 38 38 H 1.08998 * 109.46736 * 300.00320 * 15 13 3 39 39 H 1.00898 * 111.00014 * 303.95856 * 16 15 13 40 40 H 1.08998 * 109.46839 * 60.00081 * 17 16 15 41 41 H 1.08994 * 109.47089 * 300.00377 * 17 16 15 42 42 H 1.08998 * 109.47386 * 60.00280 * 18 17 16 43 43 H 1.08994 * 109.47413 * 300.00042 * 18 17 16 44 44 H 1.09004 * 109.47028 * 95.70929 * 20 19 18 45 45 H 1.08993 * 109.47133 * 215.71395 * 20 19 18 46 46 H 1.09002 * 109.46913 * 335.71481 * 20 19 18 47 47 H 1.08010 * 125.82198 * 180.21008 * 25 24 23 48 48 H 1.08008 * 126.41716 * 179.77118 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1255 -3.6181 9 14 5.9133 2.0955 -3.4174 10 1 5.9761 0.8743 -4.2600 11 1 6.3925 3.2625 -4.2008 12 1 6.7736 1.9158 -2.2203 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9922 1.3061 2.4724 16 7 2.3107 2.2060 3.5889 17 6 2.0771 1.5458 4.8802 18 6 2.4186 2.5122 6.0162 19 7 2.1862 1.8536 7.3040 20 6 0.8755 1.9519 7.9510 21 6 3.1799 1.1621 7.8962 22 8 4.2467 1.0242 7.3291 23 6 2.9735 0.5728 9.2315 24 7 1.8413 0.5606 9.9024 25 6 2.0309 -0.0587 11.0653 26 6 3.3288 -0.4434 11.1373 27 7 3.9266 -0.0494 9.9881 28 1 4.8567 -0.1834 9.7471 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6753 3.5160 -4.4441 37 1 2.6227 0.4188 2.5299 38 1 0.9443 1.0116 2.5302 39 1 3.2590 2.5442 3.5216 40 1 2.7076 0.6598 4.9546 41 1 1.0297 1.2537 4.9547 42 1 1.7878 3.3980 5.9416 43 1 3.4659 2.8048 5.9419 44 1 0.2805 1.0732 7.7017 45 1 1.0069 2.0071 9.0316 46 1 0.3638 2.8484 7.6009 47 1 1.2797 -0.2232 11.8237 48 1 3.7979 -0.9666 11.9575 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691312086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:41 Heat of formation + Delta-G solvation = 10.849988 kcal Electronic energy + Delta-G solvation = -28561.089970 eV Core-core repulsion = 24460.088000 eV Total energy + Delta-G solvation = -4101.001971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.73027 -39.88999 -39.05594 -36.64666 -35.45607 -34.94008 -33.15653 -32.76026 -30.98462 -30.06284 -29.47468 -27.56162 -26.86255 -25.52099 -23.66000 -22.97217 -22.26672 -22.02517 -21.95545 -20.45801 -18.51079 -18.28116 -16.98800 -16.69483 -16.44851 -16.31302 -16.10889 -15.78413 -15.45652 -14.88603 -14.63282 -14.44681 -14.35382 -14.14450 -13.87644 -13.54273 -13.32884 -13.28537 -13.15774 -13.08380 -12.73904 -12.37331 -12.07236 -11.94167 -11.83694 -11.43300 -11.20789 -11.12949 -10.87704 -10.78291 -10.70712 -10.69225 -10.49359 -10.31925 -10.09674 -9.59589 -9.20776 -9.00169 -8.81479 -8.40414 -8.31850 -7.60465 -6.01046 -4.05564 0.90679 2.07764 2.13844 2.93090 2.98443 3.31867 3.38478 3.42267 3.50810 3.73448 3.86637 4.37444 4.44524 4.52107 4.69783 4.84660 4.87296 4.98991 5.05703 5.14407 5.31165 5.33388 5.34696 5.39201 5.47059 5.50650 5.56650 5.68318 5.69930 5.73772 5.81533 5.85923 6.03639 6.06963 6.25527 6.26423 6.51536 6.61838 6.86674 6.90365 7.16152 7.25549 7.41882 7.50511 7.60755 7.70556 7.95928 8.27655 8.48754 8.94418 9.17011 9.59442 11.06894 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.001925 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.487334 B =14543.039363 C =15181.277490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.505 3.495 14 O -0.528 6.528 15 C 0.043 3.957 16 N -0.670 5.670 17 C 0.047 3.953 18 C 0.118 3.882 19 N -0.588 5.588 20 C 0.067 3.933 21 C 0.600 3.400 22 O -0.539 6.539 23 C 0.149 3.851 24 N -0.438 5.438 25 C -0.032 4.032 26 C -0.023 4.023 27 N -0.524 5.524 28 H 0.431 0.569 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.354 0.646 40 H 0.033 0.967 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.180 0.820 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 -9.448 29.938 31.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.290 3.710 14 O -0.404 6.404 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.084 4.084 18 C -0.004 4.004 19 N -0.319 5.319 20 C -0.076 4.076 21 C 0.385 3.615 22 O -0.415 6.415 23 C -0.112 4.112 24 N -0.162 5.162 25 C -0.185 4.185 26 C -0.162 4.162 27 N -0.126 5.126 28 H 0.271 0.729 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.173 0.827 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.077 0.923 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.197 0.803 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -6.176 -8.101 29.088 30.820 hybrid contribution 2.739 -1.461 -0.092 3.105 sum -3.438 -9.562 28.996 30.725 Atomic orbital electron populations 1.22222 0.96800 1.01322 1.02393 1.21406 0.93522 0.84329 1.02538 1.48246 1.64075 1.13177 1.07702 1.19250 0.96143 0.93699 0.78118 1.21438 0.96990 1.31778 1.06180 0.92578 1.24938 0.97813 0.94972 0.96447 1.69936 1.35645 1.33462 1.14303 0.86507 0.84767 0.77632 0.78558 1.20700 1.21091 1.19947 1.20156 0.78891 0.87070 0.84855 1.90672 1.45105 1.17737 1.86935 1.21884 1.02273 0.94329 0.90432 1.60043 1.32853 1.37589 0.99845 1.22255 1.01422 0.95770 0.88941 1.21545 1.03643 0.95174 0.80069 1.47464 1.12583 1.50797 1.21075 1.22412 0.82322 1.01768 1.01056 1.16568 0.84030 0.78626 0.82247 1.90872 1.25915 1.60032 1.64708 1.22659 0.85749 1.05975 0.96778 1.70381 1.22838 1.17299 1.05641 1.22636 0.95449 1.03180 0.97189 1.23033 0.95645 1.06026 0.91535 1.42967 1.13252 1.41823 1.14571 0.72921 0.91990 0.92265 0.93027 0.89996 0.91965 0.95067 0.93850 0.92761 0.92947 0.88778 0.82689 0.94866 0.90763 0.88585 0.89550 0.92302 0.87294 0.91260 0.80314 0.79597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.84 2.46 -175.05 -0.43 -13.27 16 4 C 0.25 6.56 5.16 -5.20 -0.03 6.53 16 5 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.50 10.71 7.71 -10.98 -0.08 10.63 16 14 O -0.53 -13.57 15.78 5.56 0.09 -13.48 16 15 C 0.04 0.68 4.72 -4.97 -0.02 0.65 16 16 N -0.67 -9.97 6.13 -115.06 -0.70 -10.67 16 17 C 0.05 0.56 6.01 -3.83 -0.02 0.53 16 18 C 0.12 1.27 5.68 -4.04 -0.02 1.25 16 19 N -0.59 -5.98 2.87 -182.86 -0.53 -6.51 16 20 C 0.07 0.53 9.69 59.85 0.58 1.11 16 21 C 0.60 6.97 7.66 -12.53 -0.10 6.88 16 22 O -0.54 -7.72 16.71 5.28 0.09 -7.63 16 23 C 0.15 1.44 7.68 -154.52 -1.19 0.26 16 24 N -0.44 -3.87 7.66 -11.25 -0.09 -3.95 16 25 C -0.03 -0.20 11.85 -17.96 -0.21 -0.41 16 26 C -0.02 -0.11 12.00 -16.94 -0.20 -0.31 16 27 N -0.52 -3.58 6.15 -10.78 -0.07 -3.65 16 28 H 0.43 2.23 8.96 -40.82 -0.37 1.86 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 32 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 33 H 0.06 0.85 6.44 -51.92 -0.33 0.52 16 34 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.05 0.76 7.40 -51.93 -0.38 0.37 16 38 H 0.09 1.28 7.19 -51.93 -0.37 0.91 16 39 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.92 7.85 -51.93 -0.41 0.52 16 43 H 0.09 1.03 7.48 -51.93 -0.39 0.64 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.11 0.89 5.25 -51.93 -0.27 0.62 16 46 H 0.07 0.45 7.83 -51.93 -0.41 0.04 16 47 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 48 H 0.19 0.16 8.06 -52.48 -0.42 -0.27 16 LS Contribution 401.64 15.07 6.05 6.05 Total: -1.00 -36.93 401.64 -8.60 -45.53 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.37 Total: 3.46 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -1.36 Total: 13.11 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -1.08 Total: -64.23 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.18 Total: -21.12 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.93 -8.60 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691312086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.380 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds