Wall clock time and date at job start Tue Mar 31 2020 20:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.47179 * 2 1 4 4 C 1.46496 * 119.99683 * 269.99898 * 3 2 1 5 5 C 1.50699 * 109.47108 * 269.99583 * 4 3 2 6 6 H 1.08002 * 120.00014 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00261 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99791 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00182 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46889 * 90.00458 * 9 7 5 11 11 H 1.48503 * 109.47280 * 210.00288 * 9 7 5 12 12 H 1.48505 * 109.47011 * 330.00201 * 9 7 5 13 13 C 1.34775 * 119.99912 * 89.99445 * 3 2 1 14 14 O 1.21280 * 119.99620 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00361 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47397 * 179.97438 * 15 13 3 17 17 C 1.46898 * 111.00050 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.46967 * 180.02562 * 17 16 15 19 19 N 1.46506 * 109.46986 * 180.02562 * 18 17 16 20 20 C 1.46499 * 119.99805 * 269.72403 * 19 18 17 21 21 C 1.34771 * 119.99762 * 90.00251 * 19 18 17 22 22 O 1.21598 * 120.00581 * 356.05734 * 21 19 18 23 23 C 1.47409 * 119.99488 * 176.06155 * 21 19 18 24 24 N 1.31613 * 125.86683 * 5.61299 * 23 21 19 25 25 C 1.33104 * 109.09328 * 179.83373 * 24 23 21 26 26 C 1.35561 * 108.35041 * 0.43108 * 25 24 23 27 27 N 1.35395 * 107.16111 * 359.74422 * 26 25 24 28 28 H 0.97008 * 126.43956 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.46691 * 60.00138 * 1 2 3 30 30 H 1.09003 * 109.46717 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47419 * 300.00261 * 1 2 3 32 32 H 1.08998 * 109.47863 * 239.99628 * 2 1 3 33 33 H 1.09008 * 109.47285 * 119.99469 * 2 1 3 34 34 H 1.08999 * 109.47362 * 29.99571 * 4 3 2 35 35 H 1.09002 * 109.46795 * 150.00169 * 4 3 2 36 36 H 0.97007 * 119.99972 * 179.97438 * 8 7 5 37 37 H 1.09005 * 109.46777 * 59.99831 * 15 13 3 38 38 H 1.08998 * 109.46736 * 300.00320 * 15 13 3 39 39 H 1.00898 * 111.00014 * 303.95856 * 16 15 13 40 40 H 1.08998 * 109.46839 * 60.00081 * 17 16 15 41 41 H 1.08994 * 109.47089 * 300.00377 * 17 16 15 42 42 H 1.08998 * 109.47386 * 60.00280 * 18 17 16 43 43 H 1.08994 * 109.47413 * 300.00042 * 18 17 16 44 44 H 1.09004 * 109.47028 * 95.70929 * 20 19 18 45 45 H 1.08993 * 109.47133 * 215.71395 * 20 19 18 46 46 H 1.09002 * 109.46913 * 335.71481 * 20 19 18 47 47 H 1.08010 * 125.82198 * 180.21008 * 25 24 23 48 48 H 1.08008 * 126.41716 * 179.77118 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1255 -3.6181 9 14 5.9133 2.0955 -3.4174 10 1 5.9761 0.8743 -4.2600 11 1 6.3925 3.2625 -4.2008 12 1 6.7736 1.9158 -2.2203 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9922 1.3061 2.4724 16 7 2.3107 2.2060 3.5889 17 6 2.0771 1.5458 4.8802 18 6 2.4186 2.5122 6.0162 19 7 2.1862 1.8536 7.3040 20 6 0.8755 1.9519 7.9510 21 6 3.1799 1.1621 7.8962 22 8 4.2467 1.0242 7.3291 23 6 2.9735 0.5728 9.2315 24 7 1.8413 0.5606 9.9024 25 6 2.0309 -0.0587 11.0653 26 6 3.3288 -0.4434 11.1373 27 7 3.9266 -0.0494 9.9881 28 1 4.8567 -0.1834 9.7471 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6753 3.5160 -4.4441 37 1 2.6227 0.4188 2.5299 38 1 0.9443 1.0116 2.5302 39 1 3.2590 2.5442 3.5216 40 1 2.7076 0.6598 4.9546 41 1 1.0297 1.2537 4.9547 42 1 1.7878 3.3980 5.9416 43 1 3.4659 2.8048 5.9419 44 1 0.2805 1.0732 7.7017 45 1 1.0069 2.0071 9.0316 46 1 0.3638 2.8484 7.6009 47 1 1.2797 -0.2232 11.8237 48 1 3.7979 -0.9666 11.9575 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691312086.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:39 Heat of formation + Delta-G solvation = -16.743889 kcal Electronic energy + Delta-G solvation = -28562.286531 eV Core-core repulsion = 24460.088000 eV Total energy + Delta-G solvation = -4102.198531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.25208 -40.82874 -40.59103 -37.67166 -36.94108 -36.16814 -34.89563 -33.70499 -31.91203 -31.51911 -30.35466 -29.15510 -27.72030 -26.86608 -24.89343 -24.36560 -23.65948 -22.92526 -22.48190 -21.12163 -19.95146 -19.09722 -18.63053 -18.00294 -17.81749 -17.33698 -17.25060 -16.88180 -16.79420 -16.31014 -15.66021 -15.56724 -15.23522 -14.88897 -14.85419 -14.65470 -14.61310 -14.46867 -14.25655 -14.11409 -13.93475 -13.51827 -13.51146 -13.29700 -13.18302 -13.05215 -12.79418 -12.66460 -12.47120 -12.18040 -12.13415 -11.86840 -11.72017 -11.53764 -11.32485 -10.90405 -10.64770 -10.60766 -9.90147 -9.52974 -9.49688 -9.41861 -8.22746 -6.37582 0.28666 1.34587 1.37889 1.43237 1.48116 1.62059 1.84931 2.20372 2.29106 2.37411 2.46130 3.06183 3.12043 3.30998 3.69851 3.88368 3.98241 4.06056 4.10817 4.32023 4.34648 4.37545 4.40612 4.46686 4.48847 4.50161 4.65607 4.73161 4.80794 4.88077 4.93562 4.97416 4.99568 5.05818 5.19026 5.22494 5.37782 5.39798 5.57711 5.71194 5.79733 5.90271 6.06716 6.12826 6.15738 6.19265 6.68514 6.70202 6.82083 6.96523 7.28159 7.50999 8.84121 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.001925 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.487334 B =14543.039363 C =15181.277490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.494 3.506 14 O -0.585 6.585 15 C 0.060 3.940 16 N -0.681 5.681 17 C 0.058 3.942 18 C 0.122 3.878 19 N -0.586 5.586 20 C 0.069 3.931 21 C 0.594 3.406 22 O -0.579 6.579 23 C 0.108 3.892 24 N -0.446 5.446 25 C -0.052 4.052 26 C 0.004 3.996 27 N -0.522 5.522 28 H 0.437 0.563 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.022 0.978 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.344 0.656 40 H 0.023 0.977 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.206 0.794 48 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 -11.876 32.423 35.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.283 3.717 14 O -0.465 6.465 15 C -0.072 4.072 16 N -0.313 5.313 17 C -0.072 4.072 18 C -0.001 4.001 19 N -0.316 5.316 20 C -0.072 4.072 21 C 0.381 3.619 22 O -0.459 6.459 23 C -0.151 4.151 24 N -0.170 5.170 25 C -0.204 4.204 26 C -0.136 4.136 27 N -0.125 5.125 28 H 0.277 0.723 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.040 0.960 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.162 0.838 40 H 0.042 0.958 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.126 0.874 46 H 0.103 0.897 47 H 0.223 0.777 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.583 -10.573 31.582 33.950 hybrid contribution 2.787 -0.741 -0.734 2.976 sum -3.796 -11.314 30.849 33.077 Atomic orbital electron populations 1.22150 0.94425 1.03494 1.01780 1.21748 0.95449 0.81352 1.03772 1.48277 1.64093 1.15069 1.06186 1.18686 0.95207 0.91541 0.80433 1.21701 0.97926 1.31963 1.06498 0.93047 1.25870 1.02413 0.94513 0.96476 1.70056 1.37733 1.34146 1.14753 0.85413 0.78978 0.78233 0.78144 1.18743 1.20561 1.19969 1.21196 0.77434 0.86661 0.86435 1.90637 1.47559 1.20410 1.87885 1.21799 1.04334 0.93907 0.87190 1.60067 1.32295 1.38101 1.00855 1.22219 1.02085 0.95268 0.87638 1.21448 1.02893 0.95468 0.80319 1.47532 1.13209 1.50192 1.20691 1.22491 0.81225 1.02621 1.00880 1.16915 0.83624 0.78343 0.83009 1.90832 1.27371 1.61756 1.65941 1.22279 0.87028 1.08916 0.96850 1.70305 1.22734 1.17387 1.06587 1.23243 0.96955 1.03221 0.96994 1.23803 0.95144 1.03580 0.91108 1.43091 1.13356 1.41164 1.14844 0.72273 0.94242 0.88617 0.92026 0.90998 0.88482 0.95985 0.98579 0.92411 0.90965 0.85818 0.83782 0.95837 0.89031 0.87295 0.91335 0.91981 0.87449 0.89701 0.77735 0.75336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.10 3.08 5.93 86.38 0.51 3.59 16 3 N -0.60 -26.28 2.46 -826.14 -2.03 -28.31 16 4 C 0.26 14.60 5.16 85.63 0.44 15.04 16 5 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 6 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.97 46.04 29.54 68.60 2.03 48.07 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 13 C 0.49 21.25 7.71 87.66 0.68 21.93 16 14 O -0.58 -31.38 15.78 -3.03 -0.05 -31.43 16 15 C 0.06 1.77 4.72 85.56 0.40 2.17 16 16 N -0.68 -19.88 6.13 -517.94 -3.17 -23.05 16 17 C 0.06 1.31 6.01 86.30 0.52 1.83 16 18 C 0.12 2.59 5.68 86.38 0.49 3.08 16 19 N -0.59 -11.73 2.87 -850.71 -2.44 -14.18 16 20 C 0.07 1.01 9.69 127.77 1.24 2.25 16 21 C 0.59 13.99 7.66 86.66 0.66 14.66 16 22 O -0.58 -17.25 16.71 -4.02 -0.07 -17.31 16 23 C 0.11 2.02 7.68 136.28 1.05 3.06 16 24 N -0.45 -7.26 7.66 -189.52 -1.45 -8.71 16 25 C -0.05 -0.50 11.85 83.88 0.99 0.49 16 26 C 0.00 0.02 12.00 83.52 1.00 1.03 16 27 N -0.52 -6.39 6.15 -188.02 -1.16 -7.55 16 28 H 0.44 4.11 8.96 -92.70 -0.83 3.28 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.42 7.22 -2.39 -0.02 1.41 16 32 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 33 H 0.10 2.35 6.44 -2.38 -0.02 2.34 16 34 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 35 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 36 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 37 H 0.07 1.89 7.40 -2.38 -0.02 1.88 16 38 H 0.12 2.95 7.19 -2.39 -0.02 2.94 16 39 H 0.34 11.23 8.43 -89.70 -0.76 10.47 16 40 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.11 2.01 7.85 -2.39 -0.02 2.00 16 43 H 0.07 1.72 7.48 -2.39 -0.02 1.70 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.11 1.66 5.25 -2.39 -0.01 1.64 16 46 H 0.08 0.95 7.83 -2.39 -0.02 0.93 16 47 H 0.21 0.70 8.06 -2.91 -0.02 0.68 16 48 H 0.23 -0.71 8.06 -2.91 -0.02 -0.73 16 Total: -1.00 -85.42 401.64 0.77 -84.64 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.60 Total: 19.95 kcal Atomic # 6 Polarization: 25.39 SS G_CDS: 9.43 Total: 34.82 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -9.97 Total: -138.74 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.12 Total: -48.74 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -85.42 0.77 -84.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691312086.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.900 kcal (2) G-P(sol) polarization free energy of solvation -85.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds