Wall clock time and date at job start Tue Mar 31 2020 20:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47135 * 2 1 4 4 C 1.42900 * 114.00390 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.30317 * 27.82754 * 4 3 2 6 6 C 1.54384 * 110.43264 * 265.59384 * 4 3 2 7 7 N 1.48143 * 104.62065 * 264.94839 * 6 4 3 8 8 C 1.34769 * 127.84170 * 140.39360 * 7 6 4 9 9 O 1.21281 * 120.00155 * 179.97438 * 8 7 6 10 10 C 1.50701 * 119.99961 * 359.97438 * 8 7 6 11 11 H 1.08999 * 109.47109 * 300.00038 * 10 8 7 12 12 C 1.52998 * 109.47182 * 59.99838 * 10 8 7 13 13 N 1.46501 * 109.47237 * 180.02562 * 10 8 7 14 14 C 1.34430 * 126.81990 * 274.70949 * 13 10 8 15 15 N 1.30834 * 108.07928 * 179.89529 * 14 13 10 16 16 C 1.33242 * 109.82254 * 0.37613 * 15 14 13 17 17 N 1.30706 * 108.94968 * 359.76878 * 16 15 14 18 18 C 1.48151 * 104.32040 * 320.41512 * 7 6 4 19 19 C 1.54281 * 110.34520 * 150.00260 * 4 3 2 20 20 H 1.09005 * 110.34282 * 359.97438 * 19 4 3 21 21 C 1.53004 * 110.34432 * 237.84878 * 19 4 3 22 22 N 1.46499 * 109.47198 * 175.00023 * 21 19 4 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47144 * 90.00258 * 27 25 23 29 29 H 1.48500 * 109.47140 * 210.00775 * 27 25 23 30 30 H 1.48502 * 109.46967 * 330.00206 * 27 25 23 31 31 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47114 * 299.99370 * 1 2 3 33 33 H 1.09003 * 109.47294 * 59.99915 * 1 2 3 34 34 H 1.09004 * 109.46616 * 240.00715 * 2 1 3 35 35 H 1.08993 * 109.47510 * 120.00824 * 2 1 3 36 36 H 1.09008 * 110.40676 * 23.73277 * 6 4 3 37 37 H 1.09001 * 110.40797 * 146.15873 * 6 4 3 38 38 H 1.08999 * 109.46935 * 60.00093 * 12 10 8 39 39 H 1.09001 * 109.47048 * 180.02562 * 12 10 8 40 40 H 1.08997 * 109.47063 * 300.00133 * 12 10 8 41 41 H 1.08001 * 125.96374 * 0.03542 * 14 13 10 42 42 H 1.08005 * 125.52394 * 179.79976 * 16 15 14 43 43 H 1.08998 * 110.40618 * 280.80042 * 18 7 6 44 44 H 1.08998 * 110.40357 * 158.37108 * 18 7 6 45 45 H 1.09009 * 109.46730 * 54.99810 * 21 19 4 46 46 H 1.08998 * 109.46846 * 295.00355 * 21 19 4 47 47 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 48 48 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8791 0.5889 -0.4781 6 6 3.9599 1.6134 1.4416 7 7 4.0937 3.0757 1.6376 8 6 3.8021 3.7921 2.7412 9 8 3.9679 4.9935 2.7456 10 6 3.2699 3.1003 3.9697 11 1 2.3335 2.5979 3.7269 12 6 4.2902 2.0697 4.4570 13 7 3.0333 4.0901 5.0236 14 6 3.9334 4.5593 5.9049 15 7 3.3315 5.4273 6.6769 16 6 2.0505 5.5324 6.3257 17 7 1.8198 4.7328 5.3178 18 6 4.6203 3.5719 0.3448 19 6 3.8663 2.7515 -0.7238 20 1 2.9935 3.2996 -1.0790 21 6 4.7957 2.4190 -1.8928 22 7 5.1014 3.6432 -2.6372 23 6 5.9164 3.5906 -3.7364 24 1 6.3373 2.6474 -4.0519 25 6 6.2014 4.7496 -4.4452 26 7 5.6887 5.8992 -4.0603 27 14 7.3136 4.6780 -5.9442 28 1 6.4935 4.4340 -7.1578 29 1 8.0365 5.9674 -6.0862 30 1 8.2951 3.5758 -5.7801 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 3.2471 1.1981 2.1541 37 1 4.9294 1.1258 1.5446 38 1 5.2265 2.5721 4.6998 39 1 3.9050 1.5690 5.3453 40 1 4.4657 1.3333 3.6728 41 1 4.9728 4.2717 5.9640 42 1 1.3212 6.1746 6.7970 43 1 5.6929 3.3903 0.2764 44 1 4.4058 4.6344 0.2297 45 1 4.3060 1.7042 -2.5543 46 1 5.7199 1.9859 -1.5102 47 1 4.7230 4.4902 -2.3540 48 1 5.8881 6.7091 -4.5554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691316522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:02 Heat of formation + Delta-G solvation = 39.230362 kcal Electronic energy + Delta-G solvation = -29934.208402 eV Core-core repulsion = 25834.437097 eV Total energy + Delta-G solvation = -4099.771305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.28722 -40.43495 -38.72761 -36.69948 -35.34720 -34.70534 -32.40864 -31.50656 -31.39041 -30.46596 -29.50094 -28.41459 -26.24615 -25.04724 -23.90162 -23.00788 -22.20122 -22.05944 -21.73727 -20.12440 -19.73135 -17.74586 -17.50100 -17.05742 -16.98445 -16.23845 -15.79580 -15.59001 -15.29495 -14.94817 -14.70655 -14.53225 -14.42804 -14.14203 -13.93133 -13.32783 -13.22094 -13.19570 -13.00116 -12.83623 -12.72263 -12.46982 -12.43038 -12.07506 -11.86790 -11.79236 -11.50689 -11.30908 -11.11097 -10.85124 -10.79463 -10.56144 -10.46793 -10.17745 -10.12221 -9.90521 -9.88030 -9.67094 -9.61468 -8.94480 -8.79398 -6.99403 -5.80052 -3.10609 1.40650 1.91007 2.33564 2.77702 2.87393 3.41151 3.43890 3.47727 3.48324 3.90957 4.07642 4.15168 4.34675 4.34849 4.49818 4.59545 4.68224 4.80248 4.87383 4.91590 4.95482 5.02140 5.10544 5.15314 5.17265 5.24699 5.26583 5.40002 5.51346 5.53505 5.60309 5.68590 5.73117 5.92814 5.98171 6.02419 6.06888 6.20710 6.23694 6.28496 6.55632 6.56793 6.65652 7.14321 7.32787 7.64794 7.88633 7.93227 8.37375 9.48889 10.04223 10.38473 11.42306 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.002963 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.383593 B = 9446.607471 C =11234.255436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.372 6.372 4 C 0.081 3.919 5 H 0.086 0.914 6 C 0.074 3.926 7 N -0.612 5.612 8 C 0.524 3.476 9 O -0.520 6.520 10 C 0.144 3.856 11 H 0.130 0.870 12 C -0.167 4.167 13 N -0.362 5.362 14 C 0.269 3.731 15 N -0.546 5.546 16 C 0.199 3.801 17 N -0.312 5.312 18 C 0.118 3.882 19 C -0.106 4.106 20 H 0.097 0.903 21 C 0.166 3.834 22 N -0.731 5.731 23 C -0.245 4.245 24 H 0.071 0.929 25 C -0.011 4.011 26 N -0.930 5.930 27 Si 0.908 3.092 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.214 0.786 42 H 0.217 0.783 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.024 0.976 46 H 0.023 0.977 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 -15.406 19.142 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.291 6.291 4 C 0.022 3.978 5 H 0.104 0.896 6 C -0.049 4.049 7 N -0.346 5.346 8 C 0.309 3.691 9 O -0.394 6.394 10 C 0.037 3.963 11 H 0.148 0.852 12 C -0.225 4.225 13 N -0.152 5.152 14 C -0.028 4.028 15 N -0.273 5.273 16 C -0.104 4.104 17 N -0.139 5.139 18 C -0.003 4.003 19 C -0.126 4.126 20 H 0.115 0.885 21 C 0.037 3.963 22 N -0.376 5.376 23 C -0.376 4.376 24 H 0.089 0.911 25 C -0.208 4.208 26 N -0.577 5.577 27 Si 0.739 3.261 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.208 1.208 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.231 0.769 42 H 0.234 0.766 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.042 0.958 46 H 0.041 0.959 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.971 -14.504 18.980 24.884 hybrid contribution 0.767 -0.040 -1.010 1.269 sum -6.204 -14.544 17.970 23.936 Atomic orbital electron populations 1.21741 0.93829 1.02067 1.03288 1.22542 0.95664 0.84087 0.99993 1.88045 1.20287 1.26099 1.94704 1.23070 0.81607 0.99373 0.93745 0.89635 1.23132 1.01549 0.81817 0.98442 1.48843 1.64266 1.08355 1.13175 1.20047 0.78532 0.87205 0.83305 1.90815 1.52501 1.13756 1.82360 1.21107 1.02664 0.87587 0.84982 0.85218 1.22303 0.98326 0.97984 1.03878 1.50035 1.07420 1.32663 1.25083 1.25889 0.97893 0.91898 0.87111 1.70566 1.06847 1.20224 1.29682 1.25991 0.93518 0.97756 0.93160 1.78064 1.03519 1.13561 1.18744 1.22513 0.98133 1.00496 0.79170 1.22466 1.00054 0.94519 0.95525 0.88507 1.20681 0.94303 0.91129 0.90144 1.42343 1.58530 1.04581 1.32152 1.19173 1.21351 0.93896 1.03158 0.91139 1.24766 1.00896 0.95475 0.99615 1.69665 1.48298 0.98155 1.41627 0.86188 0.80183 0.76792 0.82973 1.21684 1.21728 1.20750 0.91245 0.92010 0.91648 0.93021 0.93632 0.89789 0.89433 0.90530 0.89930 0.88651 0.76921 0.76624 0.89799 0.89214 0.95837 0.95944 0.78090 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.46 6.50 37.16 0.24 0.70 16 3 O -0.37 -4.48 9.95 -35.23 -0.35 -4.83 16 4 C 0.08 0.90 3.19 -25.34 -0.08 0.82 16 5 H 0.09 0.81 7.38 -51.93 -0.38 0.42 16 6 C 0.07 0.65 5.00 -2.41 -0.01 0.64 16 7 N -0.61 -7.70 3.31 -169.31 -0.56 -8.26 16 8 C 0.52 7.27 7.34 -10.99 -0.08 7.19 16 9 O -0.52 -9.84 16.69 5.56 0.09 -9.75 16 10 C 0.14 1.42 3.10 -69.08 -0.21 1.21 16 11 H 0.13 1.17 7.95 -51.93 -0.41 0.76 16 12 C -0.17 -0.91 8.60 37.16 0.32 -0.59 16 13 N -0.36 -4.39 3.04 -57.24 -0.17 -4.57 16 14 C 0.27 3.01 11.77 -90.65 -1.07 1.95 16 15 N -0.55 -7.03 11.19 -15.83 -0.18 -7.21 16 16 C 0.20 2.43 13.03 -91.82 -1.20 1.23 16 17 N -0.31 -4.34 12.70 29.29 0.37 -3.97 16 18 C 0.12 1.82 6.41 -2.41 -0.02 1.80 16 19 C -0.11 -1.61 2.90 -89.22 -0.26 -1.87 16 20 H 0.10 1.71 7.98 -51.93 -0.41 1.29 16 21 C 0.17 3.01 5.38 -4.04 -0.02 2.99 16 22 N -0.73 -17.80 5.48 -59.90 -0.33 -18.13 16 23 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 26 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 27 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.42 8.10 -51.93 -0.42 0.00 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.55 6.50 -51.92 -0.34 0.21 16 37 H 0.09 0.56 8.01 -51.93 -0.42 0.15 16 38 H 0.08 0.39 7.22 -51.93 -0.38 0.01 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.38 5.34 -51.93 -0.28 0.11 16 41 H 0.21 1.53 7.32 -52.49 -0.38 1.15 16 42 H 0.22 1.78 8.06 -52.48 -0.42 1.36 16 43 H 0.08 1.29 7.75 -51.93 -0.40 0.89 16 44 H 0.09 1.66 7.88 -51.93 -0.41 1.25 16 45 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 46 H 0.02 0.39 7.98 -51.93 -0.41 -0.02 16 47 H 0.39 10.06 7.61 -40.82 -0.31 9.75 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 395.36 15.07 5.96 5.96 Total: -1.00 -37.43 395.36 -9.18 -46.61 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.46 Total: 6.34 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -2.25 Total: 8.03 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -0.14 Total: -69.45 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.26 Total: -14.58 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.43 -9.18 -46.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691316522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.840 kcal (2) G-P(sol) polarization free energy of solvation -37.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds