Wall clock time and date at job start Tue Mar 31 2020 20:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47135 * 2 1 4 4 C 1.42900 * 114.00390 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.30317 * 27.82754 * 4 3 2 6 6 C 1.54384 * 110.43264 * 265.59384 * 4 3 2 7 7 N 1.48143 * 104.62065 * 264.94839 * 6 4 3 8 8 C 1.34769 * 127.84170 * 140.39360 * 7 6 4 9 9 O 1.21281 * 120.00155 * 179.97438 * 8 7 6 10 10 C 1.50701 * 119.99961 * 359.97438 * 8 7 6 11 11 H 1.08999 * 109.47109 * 300.00038 * 10 8 7 12 12 C 1.52998 * 109.47182 * 59.99838 * 10 8 7 13 13 N 1.46501 * 109.47237 * 180.02562 * 10 8 7 14 14 C 1.34430 * 126.81990 * 274.70949 * 13 10 8 15 15 N 1.30834 * 108.07928 * 179.89529 * 14 13 10 16 16 C 1.33242 * 109.82254 * 0.37613 * 15 14 13 17 17 N 1.30706 * 108.94968 * 359.76878 * 16 15 14 18 18 C 1.48151 * 104.32040 * 320.41512 * 7 6 4 19 19 C 1.54281 * 110.34520 * 150.00260 * 4 3 2 20 20 H 1.09005 * 110.34282 * 359.97438 * 19 4 3 21 21 C 1.53004 * 110.34432 * 237.84878 * 19 4 3 22 22 N 1.46499 * 109.47198 * 175.00023 * 21 19 4 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.47144 * 90.00258 * 27 25 23 29 29 H 1.48500 * 109.47140 * 210.00775 * 27 25 23 30 30 H 1.48502 * 109.46967 * 330.00206 * 27 25 23 31 31 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47114 * 299.99370 * 1 2 3 33 33 H 1.09003 * 109.47294 * 59.99915 * 1 2 3 34 34 H 1.09004 * 109.46616 * 240.00715 * 2 1 3 35 35 H 1.08993 * 109.47510 * 120.00824 * 2 1 3 36 36 H 1.09008 * 110.40676 * 23.73277 * 6 4 3 37 37 H 1.09001 * 110.40797 * 146.15873 * 6 4 3 38 38 H 1.08999 * 109.46935 * 60.00093 * 12 10 8 39 39 H 1.09001 * 109.47048 * 180.02562 * 12 10 8 40 40 H 1.08997 * 109.47063 * 300.00133 * 12 10 8 41 41 H 1.08001 * 125.96374 * 0.03542 * 14 13 10 42 42 H 1.08005 * 125.52394 * 179.79976 * 16 15 14 43 43 H 1.08998 * 110.40618 * 280.80042 * 18 7 6 44 44 H 1.08998 * 110.40357 * 158.37108 * 18 7 6 45 45 H 1.09009 * 109.46730 * 54.99810 * 21 19 4 46 46 H 1.08998 * 109.46846 * 295.00355 * 21 19 4 47 47 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 48 48 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8791 0.5889 -0.4781 6 6 3.9599 1.6134 1.4416 7 7 4.0937 3.0757 1.6376 8 6 3.8021 3.7921 2.7412 9 8 3.9679 4.9935 2.7456 10 6 3.2699 3.1003 3.9697 11 1 2.3335 2.5979 3.7269 12 6 4.2902 2.0697 4.4570 13 7 3.0333 4.0901 5.0236 14 6 3.9334 4.5593 5.9049 15 7 3.3315 5.4273 6.6769 16 6 2.0505 5.5324 6.3257 17 7 1.8198 4.7328 5.3178 18 6 4.6203 3.5719 0.3448 19 6 3.8663 2.7515 -0.7238 20 1 2.9935 3.2996 -1.0790 21 6 4.7957 2.4190 -1.8928 22 7 5.1014 3.6432 -2.6372 23 6 5.9164 3.5906 -3.7364 24 1 6.3373 2.6474 -4.0519 25 6 6.2014 4.7496 -4.4452 26 7 5.6887 5.8992 -4.0603 27 14 7.3136 4.6780 -5.9442 28 1 6.4935 4.4340 -7.1578 29 1 8.0365 5.9674 -6.0862 30 1 8.2951 3.5758 -5.7801 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8898 36 1 3.2471 1.1981 2.1541 37 1 4.9294 1.1258 1.5446 38 1 5.2265 2.5721 4.6998 39 1 3.9050 1.5690 5.3453 40 1 4.4657 1.3333 3.6728 41 1 4.9728 4.2717 5.9640 42 1 1.3212 6.1746 6.7970 43 1 5.6929 3.3903 0.2764 44 1 4.4058 4.6344 0.2297 45 1 4.3060 1.7042 -2.5543 46 1 5.7199 1.9859 -1.5102 47 1 4.7230 4.4902 -2.3540 48 1 5.8881 6.7091 -4.5554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691316522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:00 Heat of formation + Delta-G solvation = 13.014575 kcal Electronic energy + Delta-G solvation = -29935.345204 eV Core-core repulsion = 25834.437097 eV Total energy + Delta-G solvation = -4100.908107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.16056 -41.46075 -39.74138 -37.73360 -36.48321 -36.09065 -33.94819 -32.48725 -32.34110 -31.54394 -30.62247 -29.41316 -27.41653 -26.25194 -25.16424 -23.96859 -23.32286 -23.04791 -22.59435 -21.34193 -20.69792 -19.21519 -18.53696 -18.33213 -17.92863 -17.19773 -16.70728 -16.58576 -16.42229 -16.23602 -15.75417 -15.66181 -15.49943 -15.17065 -15.10923 -14.86447 -14.60025 -14.09658 -13.72763 -13.71241 -13.55048 -13.34481 -13.24987 -13.11414 -12.95394 -12.88527 -12.69067 -12.55007 -12.35418 -12.25156 -12.15354 -11.98100 -11.74912 -11.68355 -11.51497 -11.09595 -10.96126 -10.83619 -10.64979 -10.55585 -9.83896 -9.02013 -7.95212 -5.25234 0.51896 1.12360 1.30517 1.47212 1.49279 1.57651 1.82295 1.98171 2.52727 2.69235 3.08373 3.38217 3.39468 3.42460 3.45963 3.57499 3.69322 3.92243 3.97240 3.98700 4.22401 4.23493 4.26722 4.28666 4.40407 4.49830 4.50517 4.57913 4.59043 4.63274 4.64607 4.75916 4.82102 4.91082 4.99956 5.05782 5.08624 5.10980 5.21107 5.25752 5.33219 5.42582 5.49916 5.76289 6.25462 6.33520 6.36922 6.84875 7.04345 7.31814 8.07074 8.28336 9.28508 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.002963 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.383593 B = 9446.607471 C =11234.255436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 O -0.402 6.402 4 C 0.087 3.913 5 H 0.113 0.887 6 C 0.075 3.925 7 N -0.607 5.607 8 C 0.517 3.483 9 O -0.584 6.584 10 C 0.150 3.850 11 H 0.141 0.859 12 C -0.160 4.160 13 N -0.369 5.369 14 C 0.270 3.730 15 N -0.573 5.573 16 C 0.195 3.805 17 N -0.352 5.352 18 C 0.124 3.876 19 C -0.098 4.098 20 H 0.061 0.939 21 C 0.166 3.834 22 N -0.749 5.749 23 C -0.241 4.241 24 H 0.084 0.916 25 C -0.080 4.080 26 N -0.973 5.973 27 Si 0.975 3.025 28 H -0.288 1.288 29 H -0.300 1.300 30 H -0.263 1.263 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.249 0.751 42 H 0.244 0.756 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.029 0.971 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -19.578 20.481 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.321 6.321 4 C 0.028 3.972 5 H 0.131 0.869 6 C -0.047 4.047 7 N -0.340 5.340 8 C 0.305 3.695 9 O -0.464 6.464 10 C 0.044 3.956 11 H 0.158 0.842 12 C -0.218 4.218 13 N -0.159 5.159 14 C -0.026 4.026 15 N -0.300 5.300 16 C -0.108 4.108 17 N -0.178 5.178 18 C 0.001 3.999 19 C -0.118 4.118 20 H 0.079 0.921 21 C 0.040 3.960 22 N -0.391 5.391 23 C -0.372 4.372 24 H 0.102 0.898 25 C -0.272 4.272 26 N -0.624 5.624 27 Si 0.804 3.196 28 H -0.216 1.216 29 H -0.227 1.227 30 H -0.188 1.188 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.265 0.735 42 H 0.260 0.740 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.201 0.799 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.067 -18.798 20.325 28.342 hybrid contribution 0.419 1.202 -1.435 1.918 sum -5.648 -17.596 18.890 26.426 Atomic orbital electron populations 1.21780 0.93908 1.03245 1.02077 1.22790 0.95683 0.82644 1.01774 1.88023 1.20613 1.28565 1.94946 1.23033 0.81814 0.97515 0.94828 0.86943 1.23520 1.04468 0.79202 0.97484 1.48881 1.63190 1.10232 1.11696 1.20919 0.77473 0.86661 0.84491 1.90784 1.55282 1.16690 1.83619 1.21351 1.04208 0.87284 0.82793 0.84163 1.22407 0.97082 0.96896 1.05388 1.50202 1.07085 1.33086 1.25541 1.26602 0.98992 0.90896 0.86145 1.70578 1.07289 1.21280 1.30876 1.26596 0.94007 0.97479 0.92702 1.77981 1.05245 1.14819 1.19798 1.22207 0.98359 0.98028 0.81329 1.22228 0.98013 0.96789 0.94786 0.92068 1.20861 0.95722 0.88794 0.90619 1.42632 1.58154 1.06048 1.32287 1.19665 1.20268 0.94117 1.03197 0.89815 1.25633 1.03227 0.95328 1.03004 1.69850 1.50609 0.98720 1.43247 0.85117 0.78496 0.76693 0.79320 1.21557 1.22701 1.18758 0.88859 0.92451 0.93666 0.92567 0.90360 0.86505 0.85491 0.89977 0.87753 0.86403 0.73535 0.74047 0.89568 0.93911 0.95279 0.93773 0.79872 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.05 0.65 6.50 71.98 0.47 1.12 16 3 O -0.40 -8.83 9.95 -148.98 -1.48 -10.32 16 4 C 0.09 1.68 3.19 31.50 0.10 1.79 16 5 H 0.11 1.60 7.38 -2.39 -0.02 1.58 16 6 C 0.07 0.99 5.00 86.53 0.43 1.42 16 7 N -0.61 -14.55 3.31 -807.97 -2.67 -17.22 16 8 C 0.52 14.14 7.34 87.66 0.64 14.78 16 9 O -0.58 -23.17 16.69 -3.03 -0.05 -23.22 16 10 C 0.15 2.64 3.10 44.24 0.14 2.78 16 11 H 0.14 2.16 7.95 -2.39 -0.02 2.15 16 12 C -0.16 -1.04 8.60 71.98 0.62 -0.42 16 13 N -0.37 -8.58 3.04 -335.02 -1.02 -9.60 16 14 C 0.27 5.71 11.77 180.36 2.12 7.83 16 15 N -0.57 -14.42 11.19 -204.00 -2.28 -16.71 16 16 C 0.19 4.73 13.03 180.77 2.36 7.08 16 17 N -0.35 -9.74 12.70 -61.24 -0.78 -10.51 16 18 C 0.12 3.91 6.41 86.53 0.55 4.46 16 19 C -0.10 -2.98 2.90 -9.89 -0.03 -3.01 16 20 H 0.06 2.30 7.98 -2.38 -0.02 2.28 16 21 C 0.17 5.93 5.38 86.38 0.46 6.39 16 22 N -0.75 -37.18 5.48 -343.44 -1.88 -39.06 16 23 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 24 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 25 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 26 N -0.97 -60.95 13.06 21.65 0.28 -60.66 16 27 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 28 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 29 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 30 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.12 0.86 6.50 -2.38 -0.02 0.85 16 37 H 0.13 0.82 8.01 -2.39 -0.02 0.80 16 38 H 0.08 0.49 7.22 -2.39 -0.02 0.48 16 39 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.12 0.24 5.34 -2.39 -0.01 0.23 16 41 H 0.25 2.98 7.32 -2.91 -0.02 2.96 16 42 H 0.24 3.93 8.06 -2.91 -0.02 3.90 16 43 H 0.09 2.66 7.75 -2.39 -0.02 2.64 16 44 H 0.04 1.73 7.88 -2.39 -0.02 1.72 16 45 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.04 1.43 7.98 -2.39 -0.02 1.41 16 47 H 0.37 20.40 7.61 -92.71 -0.71 19.69 16 48 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -88.03 395.36 2.33 -85.70 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.26 Total: 27.22 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 9.92 Total: 26.42 kcal Atomic # 7 Polarization: -145.42 SS G_CDS: -8.35 Total: -153.77 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.53 Total: -33.53 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -88.03 2.33 -85.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691316522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.719 kcal (2) G-P(sol) polarization free energy of solvation -88.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds