Wall clock time and date at job start Tue Mar 31 2020 20:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47214 * 2 1 4 4 C 1.42900 * 113.99719 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.30680 * 27.82717 * 4 3 2 6 6 C 1.54391 * 110.43341 * 265.59094 * 4 3 2 7 7 N 1.48144 * 104.61483 * 264.95069 * 6 4 3 8 8 C 1.34782 * 127.83836 * 140.39606 * 7 6 4 9 9 O 1.21285 * 119.99604 * 354.95278 * 8 7 6 10 10 C 1.50690 * 120.00310 * 174.95688 * 8 7 6 11 11 H 1.09003 * 109.47375 * 33.48828 * 10 8 7 12 12 C 1.53007 * 109.47094 * 273.49282 * 10 8 7 13 13 N 1.46496 * 109.47510 * 153.49464 * 10 8 7 14 14 C 1.34427 * 126.82599 * 84.70217 * 13 10 8 15 15 N 1.30827 * 108.07849 * 179.89621 * 14 13 10 16 16 C 1.33246 * 109.83174 * 0.38377 * 15 14 13 17 17 N 1.30708 * 108.93956 * 359.76538 * 16 15 14 18 18 C 1.48144 * 104.32763 * 320.41340 * 7 6 4 19 19 C 1.54291 * 110.34025 * 149.99922 * 4 3 2 20 20 H 1.08999 * 110.33911 * 0.02562 * 19 4 3 21 21 C 1.52999 * 110.34291 * 237.84546 * 19 4 3 22 22 N 1.46495 * 109.46784 * 174.99931 * 21 19 4 23 23 C 1.36940 * 120.00050 * 180.27919 * 22 21 19 24 24 H 1.08006 * 119.99677 * 359.72290 * 23 22 21 25 25 C 1.38806 * 120.00478 * 179.72831 * 23 22 21 26 26 N 1.31617 * 119.99830 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00425 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46754 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47225 * 119.99700 * 27 25 23 30 30 H 1.48495 * 109.47334 * 240.00088 * 27 25 23 31 31 H 1.09001 * 109.46792 * 300.00218 * 1 2 3 32 32 H 1.08995 * 109.46723 * 59.99813 * 1 2 3 33 33 H 1.09004 * 109.47256 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47145 * 239.99644 * 2 1 3 35 35 H 1.09008 * 109.46937 * 120.00255 * 2 1 3 36 36 H 1.08997 * 110.40781 * 23.73792 * 6 4 3 37 37 H 1.08996 * 110.40905 * 146.05276 * 6 4 3 38 38 H 1.09002 * 109.47196 * 65.47076 * 12 10 8 39 39 H 1.09003 * 109.47342 * 185.47244 * 12 10 8 40 40 H 1.08996 * 109.46721 * 305.47128 * 12 10 8 41 41 H 1.08003 * 125.96123 * 0.04636 * 14 13 10 42 42 H 1.07995 * 125.52598 * 179.79026 * 16 15 14 43 43 H 1.08996 * 110.40760 * 280.80443 * 18 7 6 44 44 H 1.09004 * 110.40876 * 158.36750 * 18 7 6 45 45 H 1.09002 * 109.46519 * 55.00421 * 21 19 4 46 46 H 1.08996 * 109.47483 * 295.00533 * 21 19 4 47 47 H 0.97005 * 120.00200 * 0.02562 * 22 21 19 48 48 H 0.97001 * 120.00310 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8795 0.5886 -0.4763 6 6 3.9589 1.6136 1.4433 7 7 4.0926 3.0760 1.6387 8 6 3.8001 3.7929 2.7419 9 8 3.2862 3.2519 3.6980 10 6 4.1114 5.2666 2.7874 11 1 3.9898 5.6946 1.7922 12 6 5.5535 5.4690 3.2568 13 7 3.1968 5.9305 3.7195 14 6 3.3417 6.0377 5.0516 15 7 2.3161 6.7018 5.5194 16 6 1.4948 7.0266 4.5218 17 7 1.9911 6.5760 3.3998 18 6 4.6203 3.5718 0.3462 19 6 3.8670 2.7512 -0.7228 20 1 2.9946 3.2995 -1.0781 21 6 4.7974 2.4181 -1.8908 22 7 5.1037 3.6420 -2.6353 23 6 5.9196 3.5891 -3.7339 24 1 6.3408 2.6457 -4.0488 25 6 6.2053 4.7478 -4.4428 26 7 5.6917 5.8974 -4.0593 27 14 7.3188 4.6758 -5.9409 28 1 7.7634 3.2760 -6.1603 29 1 6.5744 5.1519 -7.1343 30 1 8.5043 5.5420 -5.7188 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 3.2455 1.1986 2.1553 37 1 4.9272 1.1244 1.5478 38 1 6.2383 5.0598 2.5140 39 1 5.7485 6.5340 3.3831 40 1 5.7011 4.9574 4.2078 41 1 4.1628 5.6461 5.6338 42 1 0.5693 7.5739 4.6238 43 1 5.6929 3.3901 0.2788 44 1 4.4058 4.6343 0.2306 45 1 4.3083 1.7032 -2.5524 46 1 5.7213 1.9851 -1.5074 47 1 4.7257 4.4894 -2.3523 48 1 5.8911 6.7071 -4.5548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691316523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:08 Heat of formation + Delta-G solvation = 35.317283 kcal Electronic energy + Delta-G solvation = -30013.648494 eV Core-core repulsion = 25913.707505 eV Total energy + Delta-G solvation = -4099.940989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21234 -40.38247 -38.70590 -36.71635 -35.13992 -34.73419 -32.34011 -31.46163 -31.35880 -30.38543 -29.55195 -28.49266 -25.92839 -25.17054 -23.89490 -22.94788 -22.37647 -21.93837 -21.51078 -20.17692 -19.60173 -17.84164 -17.34462 -17.10391 -16.93970 -16.14284 -15.86379 -15.37319 -15.20349 -15.01120 -14.64813 -14.44196 -14.35497 -14.10889 -13.92760 -13.35166 -13.23484 -13.03398 -12.89124 -12.75933 -12.61976 -12.52006 -12.39639 -12.05455 -11.83430 -11.66498 -11.47037 -11.27821 -11.17292 -10.87554 -10.86642 -10.57900 -10.49358 -10.12919 -10.10168 -9.89186 -9.82739 -9.66096 -9.56494 -8.99988 -8.80179 -7.05098 -5.86578 -3.16542 1.47706 1.93679 2.37790 2.80349 2.93718 3.36981 3.42648 3.45170 3.54869 4.03448 4.19096 4.24505 4.44449 4.50951 4.55886 4.60584 4.72275 4.95062 4.98563 5.05676 5.08130 5.13057 5.18051 5.24952 5.27371 5.31521 5.40950 5.48300 5.55539 5.58247 5.62715 5.71099 5.76431 5.80981 5.98822 6.00082 6.08891 6.13451 6.15652 6.35551 6.53297 6.61778 6.64780 7.21033 7.32194 7.61072 7.84303 8.00294 8.31265 9.43323 9.97625 10.32337 11.35928 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.003443 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.022966 B = 8131.197135 C =10337.129509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.082 3.918 5 H 0.085 0.915 6 C 0.087 3.913 7 N -0.610 5.610 8 C 0.531 3.469 9 O -0.534 6.534 10 C 0.141 3.859 11 H 0.130 0.870 12 C -0.158 4.158 13 N -0.364 5.364 14 C 0.275 3.725 15 N -0.550 5.550 16 C 0.198 3.802 17 N -0.314 5.314 18 C 0.105 3.895 19 C -0.105 4.105 20 H 0.098 0.902 21 C 0.164 3.836 22 N -0.731 5.731 23 C -0.243 4.243 24 H 0.071 0.929 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.214 0.786 42 H 0.217 0.783 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.025 0.975 46 H 0.024 0.976 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 -6.748 15.312 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.022 3.978 5 H 0.102 0.898 6 C -0.036 4.036 7 N -0.344 5.344 8 C 0.317 3.683 9 O -0.410 6.410 10 C 0.034 3.966 11 H 0.148 0.852 12 C -0.217 4.217 13 N -0.154 5.154 14 C -0.022 4.022 15 N -0.277 5.277 16 C -0.105 4.105 17 N -0.141 5.141 18 C -0.017 4.017 19 C -0.125 4.125 20 H 0.116 0.884 21 C 0.036 3.964 22 N -0.376 5.376 23 C -0.374 4.374 24 H 0.089 0.911 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.738 3.262 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.231 0.769 42 H 0.234 0.766 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.218 0.782 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.909 -6.730 15.378 17.235 hybrid contribution 0.764 -0.103 -0.905 1.189 sum -3.145 -6.833 14.473 16.311 Atomic orbital electron populations 1.21732 0.93863 1.02022 1.03221 1.22526 0.95664 0.84069 0.99913 1.88028 1.20241 1.26150 1.94698 1.23049 0.81753 0.99061 0.93910 0.89754 1.22884 1.01668 0.81211 0.97865 1.48862 1.63863 1.08734 1.12936 1.20056 0.78402 0.88021 0.81842 1.90737 1.42912 1.71812 1.35561 1.21209 0.89537 0.90215 0.95606 0.85203 1.22128 0.91251 1.04596 1.03685 1.50138 1.17250 1.41164 1.06890 1.25875 0.98440 0.94931 0.82964 1.70570 1.04567 1.19900 1.32685 1.26001 1.00205 0.98946 0.85348 1.78126 0.95812 1.15959 1.24155 1.22713 0.98924 0.99727 0.80313 1.22441 0.99945 0.94741 0.95353 0.88400 1.20695 0.94347 0.91134 0.90183 1.42333 1.58479 1.04501 1.32265 1.19229 1.21034 0.93946 1.03194 0.91078 1.24736 1.00875 0.95474 0.99581 1.69655 1.48337 0.98167 1.41736 0.86132 0.80073 0.77245 0.82797 1.20549 1.21812 1.21815 0.92019 0.91696 0.91257 0.93096 0.93637 0.89502 0.89899 0.88508 0.89692 0.90721 0.76931 0.76643 0.89295 0.89597 0.95726 0.95798 0.78201 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.05 0.59 6.50 37.16 0.24 0.83 16 3 O -0.37 -5.23 9.95 -35.23 -0.35 -5.58 16 4 C 0.08 1.03 3.19 -25.33 -0.08 0.95 16 5 H 0.08 0.92 7.38 -51.93 -0.38 0.53 16 6 C 0.09 1.03 6.81 -2.41 -0.02 1.02 16 7 N -0.61 -7.91 3.32 -169.31 -0.56 -8.47 16 8 C 0.53 7.40 7.11 -10.99 -0.08 7.32 16 9 O -0.53 -9.14 16.64 5.55 0.09 -9.04 16 10 C 0.14 1.65 3.39 -69.09 -0.23 1.41 16 11 H 0.13 1.52 6.59 -51.93 -0.34 1.18 16 12 C -0.16 -1.25 8.72 37.16 0.32 -0.92 16 13 N -0.36 -4.85 3.27 -57.25 -0.19 -5.03 16 14 C 0.27 3.32 11.49 -90.66 -1.04 2.28 16 15 N -0.55 -7.42 11.19 -15.83 -0.18 -7.60 16 16 C 0.20 2.57 13.03 -91.81 -1.20 1.38 16 17 N -0.31 -4.71 12.70 29.29 0.37 -4.34 16 18 C 0.11 1.37 6.24 -2.41 -0.02 1.35 16 19 C -0.11 -1.54 2.91 -89.21 -0.26 -1.80 16 20 H 0.10 1.65 7.98 -51.93 -0.41 1.23 16 21 C 0.16 2.88 5.38 -4.04 -0.02 2.85 16 22 N -0.73 -16.75 5.48 -59.91 -0.33 -17.08 16 23 C -0.24 -6.34 9.99 -15.06 -0.15 -6.50 16 24 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 27 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.09 1.14 7.79 -51.93 -0.40 0.73 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.51 7.51 -51.93 -0.39 0.12 16 41 H 0.21 1.75 7.48 -52.48 -0.39 1.35 16 42 H 0.22 1.94 8.06 -52.49 -0.42 1.52 16 43 H 0.09 1.10 7.75 -51.93 -0.40 0.70 16 44 H 0.09 1.12 6.60 -51.93 -0.34 0.78 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.40 7.98 -51.93 -0.41 -0.01 16 47 H 0.38 9.28 7.61 -40.82 -0.31 8.96 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -35.07 399.12 -9.24 -44.31 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.57 Total: 7.75 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -2.24 Total: 8.68 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.16 Total: -68.51 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.26 Total: -14.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.07 -9.24 -44.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691316523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.624 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds