Wall clock time and date at job start Tue Mar 31 2020 20:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47214 * 2 1 4 4 C 1.42900 * 113.99719 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.30680 * 27.82717 * 4 3 2 6 6 C 1.54391 * 110.43341 * 265.59094 * 4 3 2 7 7 N 1.48144 * 104.61483 * 264.95069 * 6 4 3 8 8 C 1.34782 * 127.83836 * 140.39606 * 7 6 4 9 9 O 1.21285 * 119.99604 * 354.95278 * 8 7 6 10 10 C 1.50690 * 120.00310 * 174.95688 * 8 7 6 11 11 H 1.09003 * 109.47375 * 33.48828 * 10 8 7 12 12 C 1.53007 * 109.47094 * 273.49282 * 10 8 7 13 13 N 1.46496 * 109.47510 * 153.49464 * 10 8 7 14 14 C 1.34427 * 126.82599 * 84.70217 * 13 10 8 15 15 N 1.30827 * 108.07849 * 179.89621 * 14 13 10 16 16 C 1.33246 * 109.83174 * 0.38377 * 15 14 13 17 17 N 1.30708 * 108.93956 * 359.76538 * 16 15 14 18 18 C 1.48144 * 104.32763 * 320.41340 * 7 6 4 19 19 C 1.54291 * 110.34025 * 149.99922 * 4 3 2 20 20 H 1.08999 * 110.33911 * 0.02562 * 19 4 3 21 21 C 1.52999 * 110.34291 * 237.84546 * 19 4 3 22 22 N 1.46495 * 109.46784 * 174.99931 * 21 19 4 23 23 C 1.36940 * 120.00050 * 180.27919 * 22 21 19 24 24 H 1.08006 * 119.99677 * 359.72290 * 23 22 21 25 25 C 1.38806 * 120.00478 * 179.72831 * 23 22 21 26 26 N 1.31617 * 119.99830 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00425 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46754 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47225 * 119.99700 * 27 25 23 30 30 H 1.48495 * 109.47334 * 240.00088 * 27 25 23 31 31 H 1.09001 * 109.46792 * 300.00218 * 1 2 3 32 32 H 1.08995 * 109.46723 * 59.99813 * 1 2 3 33 33 H 1.09004 * 109.47256 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47145 * 239.99644 * 2 1 3 35 35 H 1.09008 * 109.46937 * 120.00255 * 2 1 3 36 36 H 1.08997 * 110.40781 * 23.73792 * 6 4 3 37 37 H 1.08996 * 110.40905 * 146.05276 * 6 4 3 38 38 H 1.09002 * 109.47196 * 65.47076 * 12 10 8 39 39 H 1.09003 * 109.47342 * 185.47244 * 12 10 8 40 40 H 1.08996 * 109.46721 * 305.47128 * 12 10 8 41 41 H 1.08003 * 125.96123 * 0.04636 * 14 13 10 42 42 H 1.07995 * 125.52598 * 179.79026 * 16 15 14 43 43 H 1.08996 * 110.40760 * 280.80443 * 18 7 6 44 44 H 1.09004 * 110.40876 * 158.36750 * 18 7 6 45 45 H 1.09002 * 109.46519 * 55.00421 * 21 19 4 46 46 H 1.08996 * 109.47483 * 295.00533 * 21 19 4 47 47 H 0.97005 * 120.00200 * 0.02562 * 22 21 19 48 48 H 0.97001 * 120.00310 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8795 0.5886 -0.4763 6 6 3.9589 1.6136 1.4433 7 7 4.0926 3.0760 1.6387 8 6 3.8001 3.7929 2.7419 9 8 3.2862 3.2519 3.6980 10 6 4.1114 5.2666 2.7874 11 1 3.9898 5.6946 1.7922 12 6 5.5535 5.4690 3.2568 13 7 3.1968 5.9305 3.7195 14 6 3.3417 6.0377 5.0516 15 7 2.3161 6.7018 5.5194 16 6 1.4948 7.0266 4.5218 17 7 1.9911 6.5760 3.3998 18 6 4.6203 3.5718 0.3462 19 6 3.8670 2.7512 -0.7228 20 1 2.9946 3.2995 -1.0781 21 6 4.7974 2.4181 -1.8908 22 7 5.1037 3.6420 -2.6353 23 6 5.9196 3.5891 -3.7339 24 1 6.3408 2.6457 -4.0488 25 6 6.2053 4.7478 -4.4428 26 7 5.6917 5.8974 -4.0593 27 14 7.3188 4.6758 -5.9409 28 1 7.7634 3.2760 -6.1603 29 1 6.5744 5.1519 -7.1343 30 1 8.5043 5.5420 -5.7188 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 3.2455 1.1986 2.1553 37 1 4.9272 1.1244 1.5478 38 1 6.2383 5.0598 2.5140 39 1 5.7485 6.5340 3.3831 40 1 5.7011 4.9574 4.2078 41 1 4.1628 5.6461 5.6338 42 1 0.5693 7.5739 4.6238 43 1 5.6929 3.3901 0.2788 44 1 4.4058 4.6343 0.2306 45 1 4.3083 1.7032 -2.5524 46 1 5.7213 1.9851 -1.5074 47 1 4.7257 4.4894 -2.3523 48 1 5.8911 6.7071 -4.5548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691316523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:06 Heat of formation + Delta-G solvation = 12.752747 kcal Electronic energy + Delta-G solvation = -30014.626966 eV Core-core repulsion = 25913.707505 eV Total energy + Delta-G solvation = -4100.919461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.17818 -41.45105 -39.78064 -37.81881 -36.35760 -36.08129 -33.85852 -32.56953 -32.38880 -31.38286 -30.86927 -29.52104 -27.19654 -26.32018 -25.19678 -24.03712 -23.54595 -22.94142 -22.53821 -21.38194 -20.61145 -19.18776 -18.68483 -18.30000 -18.01163 -17.12816 -16.87737 -16.56127 -16.32899 -16.16809 -15.96461 -15.53258 -15.35935 -15.28937 -15.11301 -14.91963 -14.60005 -14.08506 -13.78205 -13.69056 -13.49152 -13.42945 -13.30640 -13.16752 -13.01371 -12.90710 -12.73784 -12.57330 -12.34411 -12.30884 -12.18496 -11.99045 -11.75211 -11.65700 -11.57514 -11.10415 -10.93128 -10.85225 -10.72296 -10.57839 -9.86441 -8.96262 -7.91362 -5.19653 0.51225 0.98941 1.36737 1.51081 1.52484 1.61260 1.80097 1.97021 2.53183 2.66498 3.03666 3.34958 3.41068 3.41654 3.46004 3.56684 3.68139 3.90007 3.93916 4.00890 4.15055 4.20548 4.22544 4.28007 4.37211 4.45939 4.47446 4.50094 4.53612 4.58641 4.63326 4.76563 4.79628 4.85747 4.97422 4.99287 5.01146 5.11134 5.17519 5.21235 5.29396 5.41684 5.55928 5.75428 6.22488 6.29652 6.31498 6.77792 7.03232 7.38310 8.12041 8.34743 9.31939 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.003443 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.022966 B = 8131.197135 C =10337.129509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.402 6.402 4 C 0.086 3.914 5 H 0.108 0.892 6 C 0.087 3.913 7 N -0.608 5.608 8 C 0.529 3.471 9 O -0.569 6.569 10 C 0.141 3.859 11 H 0.123 0.877 12 C -0.152 4.152 13 N -0.372 5.372 14 C 0.277 3.723 15 N -0.571 5.571 16 C 0.198 3.802 17 N -0.358 5.358 18 C 0.113 3.887 19 C -0.098 4.098 20 H 0.070 0.930 21 C 0.168 3.832 22 N -0.743 5.743 23 C -0.239 4.239 24 H 0.079 0.921 25 C -0.071 4.071 26 N -0.967 5.967 27 Si 0.966 3.034 28 H -0.265 1.265 29 H -0.300 1.300 30 H -0.294 1.294 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.248 0.752 42 H 0.245 0.755 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.023 0.977 46 H 0.045 0.955 47 H 0.375 0.625 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 -8.387 15.919 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.322 6.322 4 C 0.027 3.973 5 H 0.125 0.875 6 C -0.035 4.035 7 N -0.341 5.341 8 C 0.316 3.684 9 O -0.448 6.448 10 C 0.035 3.965 11 H 0.141 0.859 12 C -0.210 4.210 13 N -0.162 5.162 14 C -0.019 4.019 15 N -0.299 5.299 16 C -0.105 4.105 17 N -0.185 5.185 18 C -0.009 4.009 19 C -0.118 4.118 20 H 0.088 0.912 21 C 0.041 3.959 22 N -0.386 5.386 23 C -0.371 4.371 24 H 0.097 0.903 25 C -0.264 4.264 26 N -0.618 5.618 27 Si 0.796 3.204 28 H -0.189 1.189 29 H -0.227 1.227 30 H -0.221 1.221 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.264 0.736 42 H 0.261 0.739 43 H 0.121 0.879 44 H 0.099 0.901 45 H 0.041 0.959 46 H 0.063 0.937 47 H 0.207 0.793 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.520 -8.428 15.978 18.239 hybrid contribution 0.259 0.306 -1.070 1.142 sum -2.261 -8.122 14.908 17.127 Atomic orbital electron populations 1.21762 0.93529 1.03372 1.02071 1.22747 0.96045 0.82826 1.01181 1.87998 1.21004 1.28334 1.94878 1.23049 0.81542 0.98540 0.94125 0.87481 1.23029 1.02904 0.80690 0.96902 1.48901 1.63275 1.09330 1.12569 1.20445 0.77639 0.88839 0.81453 1.90714 1.44603 1.72704 1.36808 1.21382 0.91273 0.88430 0.95465 0.85911 1.22184 0.88571 1.05653 1.04579 1.50249 1.17077 1.41316 1.07586 1.26586 0.98757 0.93756 0.82775 1.70601 1.05308 1.20852 1.33143 1.26634 1.00854 0.98246 0.84766 1.78059 0.97198 1.17589 1.25646 1.22625 0.99297 0.99193 0.79808 1.22241 0.98491 0.96044 0.95060 0.91200 1.20803 0.95591 0.88986 0.90494 1.42528 1.57980 1.05905 1.32168 1.19625 1.20086 0.93941 1.03406 0.90334 1.25463 1.02977 0.95442 1.02499 1.69800 1.50314 0.98587 1.43070 0.85173 0.78091 0.77695 0.79393 1.18935 1.22724 1.22135 0.93229 0.92747 0.88668 0.91875 0.92160 0.90647 0.86865 0.87435 0.88589 0.89317 0.73601 0.73867 0.87906 0.90127 0.95949 0.93715 0.79318 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.28 71.98 0.74 -2.10 16 2 C 0.05 0.96 6.50 71.98 0.47 1.43 16 3 O -0.40 -11.05 9.95 -148.98 -1.48 -12.53 16 4 C 0.09 2.03 3.19 31.50 0.10 2.13 16 5 H 0.11 2.01 7.38 -2.39 -0.02 2.00 16 6 C 0.09 1.91 6.81 86.54 0.59 2.50 16 7 N -0.61 -15.07 3.32 -807.96 -2.68 -17.74 16 8 C 0.53 14.40 7.11 87.65 0.62 15.03 16 9 O -0.57 -19.24 16.64 -3.04 -0.05 -19.29 16 10 C 0.14 3.20 3.39 44.25 0.15 3.35 16 11 H 0.12 2.92 6.59 -2.39 -0.02 2.90 16 12 C -0.15 -2.10 8.72 71.98 0.63 -1.47 16 13 N -0.37 -9.77 3.27 -335.03 -1.09 -10.86 16 14 C 0.28 6.40 11.49 180.36 2.07 8.47 16 15 N -0.57 -15.02 11.19 -204.01 -2.28 -17.31 16 16 C 0.20 5.09 13.03 180.76 2.36 7.45 16 17 N -0.36 -10.85 12.70 -61.25 -0.78 -11.63 16 18 C 0.11 2.81 6.24 86.54 0.54 3.35 16 19 C -0.10 -2.81 2.91 -9.88 -0.03 -2.83 16 20 H 0.07 2.41 7.98 -2.39 -0.02 2.39 16 21 C 0.17 5.61 5.38 86.38 0.46 6.07 16 22 N -0.74 -33.64 5.48 -343.46 -1.88 -35.53 16 23 C -0.24 -12.24 9.99 84.03 0.84 -11.40 16 24 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 25 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 26 N -0.97 -56.16 13.06 21.65 0.28 -55.88 16 27 Si 0.97 43.78 29.55 68.60 2.03 45.80 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 30 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.07 1.87 7.79 -2.39 -0.02 1.85 16 37 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 0.99 7.51 -2.39 -0.02 0.97 16 41 H 0.25 3.52 7.48 -2.91 -0.02 3.50 16 42 H 0.25 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.10 2.32 7.75 -2.39 -0.02 2.30 16 44 H 0.08 2.11 6.60 -2.38 -0.02 2.09 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 1.36 7.98 -2.39 -0.02 1.34 16 47 H 0.37 18.29 7.61 -92.70 -0.71 17.58 16 48 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -76.16 399.12 2.33 -73.83 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.26 Total: 32.54 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 10.01 Total: 28.60 kcal Atomic # 7 Polarization: -140.52 SS G_CDS: -8.43 Total: -148.95 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.53 Total: -31.82 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -76.16 2.33 -73.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691316523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.583 kcal (2) G-P(sol) polarization free energy of solvation -76.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds