Wall clock time and date at job start Tue Mar 31 2020 20:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39891 * 125.74680 * 2 1 4 4 C 1.30284 * 109.23507 * 179.73574 * 3 2 1 5 5 C 1.41490 * 108.18736 * 0.44809 * 4 3 2 6 6 C 1.46767 * 126.51905 * 179.81732 * 5 4 3 7 7 O 1.21682 * 120.00298 * 137.63402 * 6 5 4 8 8 N 1.34777 * 119.99948 * 317.63575 * 6 5 4 9 9 C 1.46926 * 120.63137 * 354.82179 * 8 6 5 10 10 C 1.53193 * 108.77797 * 233.58623 * 9 8 6 11 11 C 1.53038 * 109.31110 * 305.36775 * 10 9 8 12 12 C 1.53041 * 109.54023 * 61.36264 * 11 10 9 13 13 H 1.09001 * 109.52177 * 58.60673 * 12 11 10 14 14 N 1.46504 * 109.49809 * 178.68228 * 12 11 10 15 15 C 1.36944 * 119.99713 * 59.83582 * 14 12 11 16 16 H 1.07992 * 119.99663 * 39.11396 * 15 14 12 17 17 C 1.38811 * 119.99551 * 219.11170 * 15 14 12 18 18 N 1.31609 * 120.00504 * 19.33544 * 17 15 14 19 19 Si 1.86807 * 119.99368 * 199.33894 * 17 15 14 20 20 H 1.48493 * 109.47090 * 90.00091 * 19 17 15 21 21 H 1.48502 * 109.46705 * 209.99732 * 19 17 15 22 22 H 1.48494 * 109.47030 * 329.99655 * 19 17 15 23 23 C 1.46503 * 120.00096 * 239.84030 * 14 12 11 24 24 C 1.52994 * 109.46727 * 266.18391 * 23 14 12 25 25 O 1.42906 * 109.47445 * 64.99997 * 24 23 14 26 26 C 1.46929 * 120.63105 * 174.80057 * 8 6 5 27 27 C 1.34847 * 125.74689 * 180.02562 * 2 1 3 28 28 N 1.38006 * 126.44990 * 359.97315 * 27 2 1 29 29 H 1.09000 * 109.46983 * 269.97035 * 1 2 3 30 30 H 1.08996 * 109.47392 * 29.97494 * 1 2 3 31 31 H 1.08999 * 109.47110 * 149.97814 * 1 2 3 32 32 H 1.07994 * 125.90754 * 180.28731 * 4 3 2 33 33 H 1.09000 * 109.58764 * 353.37813 * 9 8 6 34 34 H 1.09006 * 109.58721 * 113.79942 * 9 8 6 35 35 H 1.09004 * 109.49722 * 65.31581 * 10 9 8 36 36 H 1.08999 * 109.49759 * 185.38070 * 10 9 8 37 37 H 1.09000 * 109.46344 * 301.33988 * 11 10 9 38 38 H 1.09002 * 109.45848 * 181.38210 * 11 10 9 39 39 H 0.97004 * 120.00620 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.46772 * 26.17995 * 23 14 12 41 41 H 1.08996 * 109.47120 * 146.18326 * 23 14 12 42 42 H 1.09003 * 109.47186 * 184.99833 * 24 23 14 43 43 H 1.09002 * 109.47649 * 304.99698 * 24 23 14 44 44 H 0.96698 * 113.99980 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.58865 * 6.62576 * 26 8 6 46 46 H 1.09001 * 109.70333 * 246.27146 * 26 8 6 47 47 H 0.96992 * 120.00589 * 180.02562 * 28 27 2 48 48 H 0.96998 * 119.99819 * 0.02562 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1354 0.0000 4 6 3.5313 0.7651 0.0057 5 6 3.5727 -0.6492 -0.0009 6 6 4.7773 -1.4877 -0.0015 7 8 4.8299 -2.4776 0.7041 8 7 5.8253 -1.1612 -0.7835 9 6 5.7357 -0.0358 -1.7239 10 6 6.1221 -0.5292 -3.1217 11 6 7.5012 -1.1900 -3.0619 12 6 7.4506 -2.3958 -2.1208 13 1 6.7021 -3.1041 -2.4763 14 7 8.7629 -3.0463 -2.0885 15 6 9.8642 -2.3460 -1.6738 16 1 9.7854 -1.6563 -0.8466 17 6 11.0816 -2.5227 -2.3168 18 7 11.1183 -3.0425 -3.5254 19 14 12.6680 -2.0227 -1.4666 20 1 13.1952 -3.1714 -0.6871 21 1 13.6685 -1.6152 -2.4856 22 1 12.4015 -0.8840 -0.5515 23 6 8.8970 -4.4460 -2.5000 24 6 8.7957 -5.3508 -1.2705 25 8 7.4860 -5.2459 -0.7083 26 6 7.0792 -1.9235 -0.7117 27 6 2.2528 -1.0944 -0.0005 28 7 1.8308 -2.4084 -0.0006 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 4.3872 1.4237 0.0115 33 1 4.7149 0.3462 -1.7404 34 1 6.4189 0.7549 -1.4137 35 1 5.3858 -1.2547 -3.4679 36 1 6.1523 0.3153 -3.8102 37 1 8.2325 -0.4713 -2.6921 38 1 7.7893 -1.5202 -4.0599 39 1 11.9690 -3.1664 -3.9746 40 1 8.1014 -4.6962 -3.2018 41 1 9.8645 -4.5924 -2.9801 42 1 8.9837 -6.3839 -1.5631 43 1 9.5344 -5.0427 -0.5305 44 1 7.3497 -5.7944 0.0763 45 1 6.9450 -2.7872 -0.0604 46 1 7.8731 -1.2889 -0.3179 47 1 2.4822 -3.1270 -0.0006 48 1 0.8827 -2.6133 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691524144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:16 Heat of formation + Delta-G solvation = 22.870794 kcal Electronic energy + Delta-G solvation = -30969.137062 eV Core-core repulsion = 26868.656353 eV Total energy + Delta-G solvation = -4100.480709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.38752 -39.20496 -37.15908 -36.07216 -35.05075 -34.46799 -33.21415 -31.94038 -31.14709 -29.74100 -28.63733 -27.41167 -26.78286 -24.78765 -24.17016 -22.11068 -22.05031 -20.95677 -20.49602 -19.65523 -18.73997 -17.58952 -16.85610 -16.62059 -16.26428 -16.18545 -15.80576 -15.27396 -14.87213 -14.50712 -14.40547 -14.14803 -13.86163 -13.58657 -13.35274 -13.24508 -13.04037 -12.95406 -12.83168 -12.63503 -12.35073 -12.06793 -11.78527 -11.41246 -11.31925 -11.07365 -10.87030 -10.81510 -10.62808 -10.37657 -10.26708 -10.13421 -9.85464 -9.77917 -9.43223 -9.35108 -9.02973 -8.98748 -8.51275 -8.06236 -7.76765 -6.46935 -5.74450 -3.35844 1.89045 2.13776 2.39592 3.36809 3.42061 3.44884 3.47013 3.53686 3.76880 4.31266 4.50057 4.81214 4.87140 5.06399 5.21413 5.24125 5.28760 5.35909 5.40356 5.47212 5.54386 5.64036 5.73565 5.98148 6.10717 6.20712 6.20945 6.26657 6.33009 6.41736 6.52017 6.52777 6.57399 6.69122 6.80306 6.92995 7.08344 7.12204 7.16334 7.28963 7.31701 7.39055 7.63432 7.75153 7.86611 8.06220 8.48202 8.56340 8.78396 9.23601 9.85026 10.46532 11.23852 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.003270 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.325814 B = 8561.052786 C = 9246.423124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.403 5.403 3 N -0.311 5.311 4 C 0.113 3.887 5 C -0.357 4.357 6 C 0.597 3.403 7 O -0.560 6.560 8 N -0.598 5.598 9 C 0.107 3.893 10 C -0.132 4.132 11 C -0.123 4.123 12 C 0.178 3.822 13 H 0.050 0.950 14 N -0.570 5.570 15 C -0.251 4.251 16 H 0.060 0.940 17 C 0.012 3.988 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.277 1.277 23 C 0.149 3.851 24 C 0.055 3.945 25 O -0.565 6.565 26 C 0.106 3.894 27 C 0.420 3.580 28 N -0.836 5.836 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.188 0.812 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.254 0.746 40 H 0.029 0.971 41 H 0.106 0.894 42 H 0.019 0.981 43 H 0.041 0.959 44 H 0.356 0.644 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.427 0.573 48 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.006 3.152 3.707 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.191 5.191 3 N -0.131 5.131 4 C -0.076 4.076 5 C -0.377 4.377 6 C 0.386 3.614 7 O -0.440 6.440 8 N -0.330 5.330 9 C -0.017 4.017 10 C -0.171 4.171 11 C -0.162 4.162 12 C 0.070 3.930 13 H 0.068 0.932 14 N -0.290 5.290 15 C -0.381 4.381 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.202 1.202 23 C 0.022 3.978 24 C -0.025 4.025 25 O -0.368 6.368 26 C -0.017 4.017 27 C 0.187 3.813 28 N -0.384 5.384 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.205 0.795 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.123 0.877 42 H 0.037 0.963 43 H 0.059 0.941 44 H 0.200 0.800 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.261 0.739 48 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -19.795 4.070 3.427 20.498 hybrid contribution 1.448 -1.181 0.797 2.031 sum -18.348 2.888 4.225 19.048 Atomic orbital electron populations 1.21752 0.74562 1.04294 1.03165 1.48088 1.06187 1.02395 1.62456 1.77100 1.01733 1.05276 1.28958 1.23783 0.95021 0.93371 0.95408 1.19353 0.91068 0.93933 1.33316 1.17035 0.81601 0.83557 0.79178 1.90734 1.81957 1.28360 1.42906 1.47997 1.14217 1.32378 1.38417 1.21840 1.01615 0.88757 0.89440 1.21946 0.99144 1.00295 0.95682 1.21945 0.94191 0.99039 1.01028 1.20519 0.88384 0.92541 0.91569 0.93158 1.43627 1.02307 1.06419 1.76606 1.18984 0.87298 1.21993 1.09854 0.92251 1.25198 0.98890 1.00167 0.94542 1.69931 1.24788 1.47661 1.10891 0.86418 0.83717 0.78497 0.78909 1.21461 1.21837 1.20247 1.21079 1.02409 0.82864 0.91398 1.23135 0.83408 0.97285 0.98670 1.86612 1.33195 1.70183 1.46779 1.22244 0.82541 0.96127 1.00797 1.17943 0.89416 0.81811 0.92161 1.41525 1.10894 1.02602 1.83396 0.90955 0.88869 0.90286 0.79486 0.90030 0.91803 0.92545 0.91745 0.91522 0.92216 0.93614 0.95299 0.87676 0.96263 0.94084 0.79998 0.88879 0.91976 0.73855 0.77282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.25 59.85 0.67 1.31 16 2 N -0.40 -4.46 4.00 -66.82 -0.27 -4.73 16 3 N -0.31 -4.03 12.47 30.88 0.38 -3.65 16 4 C 0.11 1.47 9.65 -16.97 -0.16 1.30 16 5 C -0.36 -5.25 5.15 -104.82 -0.54 -5.79 16 6 C 0.60 10.55 7.41 -12.81 -0.09 10.46 16 7 O -0.56 -11.50 15.79 5.21 0.08 -11.42 16 8 N -0.60 -10.40 2.97 -174.27 -0.52 -10.92 16 9 C 0.11 1.55 5.55 -3.71 -0.02 1.53 16 10 C -0.13 -2.04 6.08 -26.61 -0.16 -2.20 16 11 C -0.12 -2.42 5.11 -26.69 -0.14 -2.56 16 12 C 0.18 3.82 2.60 -67.81 -0.18 3.65 16 13 H 0.05 1.14 7.75 -51.93 -0.40 0.74 16 14 N -0.57 -13.78 2.31 -165.53 -0.38 -14.16 16 15 C -0.25 -6.55 8.19 -15.06 -0.12 -6.67 16 16 H 0.06 1.57 6.76 -52.49 -0.35 1.22 16 17 C 0.01 0.32 5.03 -17.44 -0.09 0.23 16 18 N -0.89 -24.61 11.40 55.49 0.63 -23.98 16 19 Si 0.89 21.10 29.60 -169.99 -5.03 16.07 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.15 3.50 5.70 -4.04 -0.02 3.48 16 24 C 0.05 1.13 7.37 37.15 0.27 1.40 16 25 O -0.56 -11.18 12.92 -35.23 -0.46 -11.63 16 26 C 0.11 2.17 5.77 -3.71 -0.02 2.15 16 27 C 0.42 5.23 8.00 -153.78 -1.23 4.00 16 28 N -0.84 -8.07 9.04 31.40 0.28 -7.79 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.29 7.46 -51.93 -0.39 -0.10 16 32 H 0.19 2.00 7.51 -52.49 -0.39 1.61 16 33 H 0.08 1.05 4.87 -51.93 -0.25 0.80 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.41 7.70 -51.93 -0.40 1.01 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.03 0.67 7.84 -51.93 -0.41 0.26 16 41 H 0.11 2.73 5.52 -51.93 -0.29 2.44 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.36 5.45 9.12 45.56 0.42 5.87 16 45 H 0.09 2.12 6.48 -51.93 -0.34 1.78 16 46 H 0.06 1.34 6.81 -51.93 -0.35 0.99 16 47 H 0.43 4.74 8.05 -40.82 -0.33 4.41 16 48 H 0.40 2.36 8.04 -40.82 -0.33 2.03 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -33.35 382.03 -7.68 -41.03 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.33 Total: 13.13 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.83 Total: 12.29 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: 0.13 Total: -65.23 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.37 Total: -23.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.35 -7.68 -41.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691524144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.899 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds