Wall clock time and date at job start Tue Mar 31 2020 20:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39891 * 125.74680 * 2 1 4 4 C 1.30284 * 109.23507 * 179.73574 * 3 2 1 5 5 C 1.41490 * 108.18736 * 0.44809 * 4 3 2 6 6 C 1.46767 * 126.51905 * 179.81732 * 5 4 3 7 7 O 1.21682 * 120.00298 * 137.63402 * 6 5 4 8 8 N 1.34777 * 119.99948 * 317.63575 * 6 5 4 9 9 C 1.46926 * 120.63137 * 354.82179 * 8 6 5 10 10 C 1.53193 * 108.77797 * 233.58623 * 9 8 6 11 11 C 1.53038 * 109.31110 * 305.36775 * 10 9 8 12 12 C 1.53041 * 109.54023 * 61.36264 * 11 10 9 13 13 H 1.09001 * 109.52177 * 58.60673 * 12 11 10 14 14 N 1.46504 * 109.49809 * 178.68228 * 12 11 10 15 15 C 1.36944 * 119.99713 * 59.83582 * 14 12 11 16 16 H 1.07992 * 119.99663 * 39.11396 * 15 14 12 17 17 C 1.38811 * 119.99551 * 219.11170 * 15 14 12 18 18 N 1.31609 * 120.00504 * 19.33544 * 17 15 14 19 19 Si 1.86807 * 119.99368 * 199.33894 * 17 15 14 20 20 H 1.48493 * 109.47090 * 90.00091 * 19 17 15 21 21 H 1.48502 * 109.46705 * 209.99732 * 19 17 15 22 22 H 1.48494 * 109.47030 * 329.99655 * 19 17 15 23 23 C 1.46503 * 120.00096 * 239.84030 * 14 12 11 24 24 C 1.52994 * 109.46727 * 266.18391 * 23 14 12 25 25 O 1.42906 * 109.47445 * 64.99997 * 24 23 14 26 26 C 1.46929 * 120.63105 * 174.80057 * 8 6 5 27 27 C 1.34847 * 125.74689 * 180.02562 * 2 1 3 28 28 N 1.38006 * 126.44990 * 359.97315 * 27 2 1 29 29 H 1.09000 * 109.46983 * 269.97035 * 1 2 3 30 30 H 1.08996 * 109.47392 * 29.97494 * 1 2 3 31 31 H 1.08999 * 109.47110 * 149.97814 * 1 2 3 32 32 H 1.07994 * 125.90754 * 180.28731 * 4 3 2 33 33 H 1.09000 * 109.58764 * 353.37813 * 9 8 6 34 34 H 1.09006 * 109.58721 * 113.79942 * 9 8 6 35 35 H 1.09004 * 109.49722 * 65.31581 * 10 9 8 36 36 H 1.08999 * 109.49759 * 185.38070 * 10 9 8 37 37 H 1.09000 * 109.46344 * 301.33988 * 11 10 9 38 38 H 1.09002 * 109.45848 * 181.38210 * 11 10 9 39 39 H 0.97004 * 120.00620 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.46772 * 26.17995 * 23 14 12 41 41 H 1.08996 * 109.47120 * 146.18326 * 23 14 12 42 42 H 1.09003 * 109.47186 * 184.99833 * 24 23 14 43 43 H 1.09002 * 109.47649 * 304.99698 * 24 23 14 44 44 H 0.96698 * 113.99980 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.58865 * 6.62576 * 26 8 6 46 46 H 1.09001 * 109.70333 * 246.27146 * 26 8 6 47 47 H 0.96992 * 120.00589 * 180.02562 * 28 27 2 48 48 H 0.96998 * 119.99819 * 0.02562 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1354 0.0000 4 6 3.5313 0.7651 0.0057 5 6 3.5727 -0.6492 -0.0009 6 6 4.7773 -1.4877 -0.0015 7 8 4.8299 -2.4776 0.7041 8 7 5.8253 -1.1612 -0.7835 9 6 5.7357 -0.0358 -1.7239 10 6 6.1221 -0.5292 -3.1217 11 6 7.5012 -1.1900 -3.0619 12 6 7.4506 -2.3958 -2.1208 13 1 6.7021 -3.1041 -2.4763 14 7 8.7629 -3.0463 -2.0885 15 6 9.8642 -2.3460 -1.6738 16 1 9.7854 -1.6563 -0.8466 17 6 11.0816 -2.5227 -2.3168 18 7 11.1183 -3.0425 -3.5254 19 14 12.6680 -2.0227 -1.4666 20 1 13.1952 -3.1714 -0.6871 21 1 13.6685 -1.6152 -2.4856 22 1 12.4015 -0.8840 -0.5515 23 6 8.8970 -4.4460 -2.5000 24 6 8.7957 -5.3508 -1.2705 25 8 7.4860 -5.2459 -0.7083 26 6 7.0792 -1.9235 -0.7117 27 6 2.2528 -1.0944 -0.0005 28 7 1.8308 -2.4084 -0.0006 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 4.3872 1.4237 0.0115 33 1 4.7149 0.3462 -1.7404 34 1 6.4189 0.7549 -1.4137 35 1 5.3858 -1.2547 -3.4679 36 1 6.1523 0.3153 -3.8102 37 1 8.2325 -0.4713 -2.6921 38 1 7.7893 -1.5202 -4.0599 39 1 11.9690 -3.1664 -3.9746 40 1 8.1014 -4.6962 -3.2018 41 1 9.8645 -4.5924 -2.9801 42 1 8.9837 -6.3839 -1.5631 43 1 9.5344 -5.0427 -0.5305 44 1 7.3497 -5.7944 0.0763 45 1 6.9450 -2.7872 -0.0604 46 1 7.8731 -1.2889 -0.3179 47 1 2.4822 -3.1270 -0.0006 48 1 0.8827 -2.6133 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691524144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:14 Heat of formation + Delta-G solvation = -2.350984 kcal Electronic energy + Delta-G solvation = -30970.230760 eV Core-core repulsion = 26868.656353 eV Total energy + Delta-G solvation = -4101.574408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.34962 -40.60380 -38.78246 -37.63294 -36.30524 -35.79583 -34.14544 -33.53015 -32.82105 -31.33647 -29.76013 -28.87669 -27.86048 -26.15875 -26.01776 -23.59249 -23.22952 -22.22909 -21.85903 -21.21511 -20.00330 -18.52016 -18.41053 -18.01845 -17.91656 -17.29813 -16.84539 -16.72056 -16.31670 -16.20275 -15.73893 -15.49519 -15.28099 -15.08184 -14.77353 -14.59792 -14.38233 -14.08385 -13.91954 -13.77526 -13.51031 -13.44607 -13.34164 -13.15150 -12.97502 -12.70152 -12.31337 -12.25480 -12.12271 -11.89866 -11.87129 -11.83308 -11.59647 -11.44855 -11.16152 -10.72059 -10.67203 -10.51027 -9.87800 -9.51514 -8.78196 -8.43420 -7.74805 -5.40693 0.94020 1.32666 1.34799 1.47966 1.51296 1.58463 2.12629 2.45340 2.56306 2.79104 3.29166 3.55641 3.63209 3.77818 4.02757 4.11693 4.16518 4.24023 4.33638 4.42222 4.43492 4.52398 4.55458 4.57622 4.64236 4.65478 4.70258 4.74592 4.85819 4.93249 5.02444 5.08943 5.14852 5.28142 5.29872 5.41107 5.54165 5.61079 5.65965 5.68454 5.76791 5.83436 6.24227 6.53896 6.54738 6.69299 6.91194 7.07368 7.23335 7.41650 7.89872 8.47868 9.19740 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.003270 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.325814 B = 8561.052786 C = 9246.423124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.398 5.398 3 N -0.323 5.323 4 C 0.114 3.886 5 C -0.388 4.388 6 C 0.597 3.403 7 O -0.597 6.597 8 N -0.600 5.600 9 C 0.109 3.891 10 C -0.121 4.121 11 C -0.113 4.113 12 C 0.181 3.819 13 H 0.036 0.964 14 N -0.583 5.583 15 C -0.251 4.251 16 H 0.053 0.947 17 C -0.030 4.030 18 N -0.916 5.916 19 Si 0.951 3.049 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.272 1.272 23 C 0.147 3.853 24 C 0.069 3.931 25 O -0.577 6.577 26 C 0.125 3.875 27 C 0.423 3.577 28 N -0.822 5.822 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.205 0.795 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.034 0.966 39 H 0.251 0.749 40 H 0.024 0.976 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.026 0.974 44 H 0.378 0.622 45 H 0.067 0.933 46 H 0.047 0.953 47 H 0.422 0.578 48 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.220 4.215 4.181 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.187 5.187 3 N -0.142 5.142 4 C -0.075 4.075 5 C -0.408 4.408 6 C 0.388 3.612 7 O -0.479 6.479 8 N -0.331 5.331 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.152 4.152 12 C 0.074 3.926 13 H 0.054 0.946 14 N -0.303 5.303 15 C -0.381 4.381 16 H 0.070 0.930 17 C -0.227 4.227 18 N -0.561 5.561 19 Si 0.780 3.220 20 H -0.214 1.214 21 H -0.221 1.221 22 H -0.197 1.197 23 C 0.020 3.980 24 C -0.011 4.011 25 O -0.383 6.383 26 C 0.001 3.999 27 C 0.187 3.813 28 N -0.372 5.372 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.221 0.779 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.042 0.958 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.225 0.775 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.255 0.745 48 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -22.087 5.148 3.913 23.014 hybrid contribution 1.973 -1.565 0.674 2.607 sum -20.114 3.583 4.587 20.939 Atomic orbital electron populations 1.22192 0.71726 1.06190 1.04714 1.48390 1.07594 1.01305 1.61383 1.77048 1.01843 1.06356 1.28969 1.24010 0.95688 0.92754 0.95033 1.19180 0.90687 0.94491 1.36429 1.17466 0.82176 0.83291 0.78277 1.90701 1.82676 1.30225 1.44342 1.48008 1.13139 1.32800 1.39165 1.22021 1.03470 0.87932 0.87903 1.21878 0.95979 1.00955 0.97199 1.21783 0.96627 0.98025 0.98792 1.20532 0.86775 0.92710 0.92595 0.94598 1.43790 1.02862 1.06871 1.76746 1.19063 0.88117 1.21622 1.09339 0.92976 1.25769 1.01221 1.00758 0.94998 1.70053 1.25024 1.49008 1.11978 0.85531 0.80466 0.78172 0.77853 1.21427 1.22117 1.19662 1.20984 1.00890 0.83442 0.92660 1.22802 0.83447 0.97907 0.96944 1.86554 1.32457 1.71156 1.48086 1.21736 0.83743 0.95259 0.99172 1.17995 0.89196 0.82929 0.91185 1.41517 1.11971 1.01470 1.82197 0.89557 0.87910 0.87588 0.77857 0.87569 0.90401 0.92563 0.88833 0.93122 0.94667 0.93960 0.95791 0.90020 0.93537 0.95533 0.77501 0.91418 0.93422 0.74513 0.75094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.25 127.77 1.44 2.24 16 2 N -0.40 -7.69 4.00 -365.32 -1.46 -9.15 16 3 N -0.32 -7.55 12.47 -56.23 -0.70 -8.25 16 4 C 0.11 2.72 9.65 85.72 0.83 3.54 16 5 C -0.39 -10.82 5.15 -19.99 -0.10 -10.92 16 6 C 0.60 20.86 7.41 86.47 0.64 21.50 16 7 O -0.60 -24.79 15.79 -4.29 -0.07 -24.86 16 8 N -0.60 -20.67 2.97 -823.51 -2.45 -23.11 16 9 C 0.11 2.96 5.55 86.36 0.48 3.44 16 10 C -0.12 -3.58 6.08 30.67 0.19 -3.39 16 11 C -0.11 -4.51 5.11 30.62 0.16 -4.35 16 12 C 0.18 8.00 2.60 45.07 0.12 8.12 16 13 H 0.04 1.67 7.75 -2.39 -0.02 1.65 16 14 N -0.58 -29.02 2.31 -677.60 -1.57 -30.59 16 15 C -0.25 -13.38 8.19 84.03 0.69 -12.69 16 16 H 0.05 2.83 6.76 -2.91 -0.02 2.81 16 17 C -0.03 -1.62 5.03 84.86 0.43 -1.20 16 18 N -0.92 -51.90 11.40 21.65 0.25 -51.65 16 19 Si 0.95 43.93 29.60 68.60 2.03 45.96 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.15 7.09 5.70 86.38 0.49 7.58 16 24 C 0.07 2.84 7.37 71.98 0.53 3.37 16 25 O -0.58 -22.80 12.92 -148.98 -1.92 -24.73 16 26 C 0.13 5.25 5.77 86.36 0.50 5.75 16 27 C 0.42 9.62 8.00 132.70 1.06 10.68 16 28 N -0.82 -14.19 9.04 -54.57 -0.49 -14.69 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 0.36 7.46 -2.39 -0.02 0.34 16 32 H 0.20 3.87 7.51 -2.91 -0.02 3.85 16 33 H 0.11 2.45 4.87 -2.39 -0.01 2.43 16 34 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 2.17 7.70 -2.39 -0.02 2.15 16 38 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 40 H 0.02 1.14 7.84 -2.39 -0.02 1.12 16 41 H 0.08 4.38 5.52 -2.39 -0.01 4.37 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 44 H 0.38 11.30 9.12 -74.06 -0.68 10.62 16 45 H 0.07 3.18 6.48 -2.39 -0.02 3.17 16 46 H 0.05 2.11 6.81 -2.39 -0.02 2.10 16 47 H 0.42 8.85 8.05 -92.71 -0.75 8.11 16 48 H 0.42 3.76 8.04 -92.71 -0.75 3.02 16 Total: -1.00 -74.05 382.03 -0.09 -74.14 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -1.14 Total: 33.28 kcal Atomic # 6 Polarization: 26.22 SS G_CDS: 7.44 Total: 33.66 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -6.42 Total: -137.44 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.99 Total: -49.59 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -74.05 -0.09 -74.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691524144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.784 kcal (2) G-P(sol) polarization free energy of solvation -74.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds