Wall clock time and date at job start Tue Mar 31 2020 21:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35501 * 126.97786 * 2 1 4 4 N 1.30520 * 107.30411 * 180.02562 * 3 2 1 5 5 N 1.28604 * 109.67221 * 359.72812 * 4 3 2 6 6 C 1.30515 * 109.67299 * 0.44989 * 5 4 3 7 7 C 1.50701 * 126.34650 * 179.82613 * 6 5 4 8 8 O 1.42896 * 109.46965 * 269.68570 * 7 6 5 9 9 C 1.42900 * 114.00044 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47413 * 180.02562 * 9 8 7 11 11 O 1.21288 * 119.99602 * 0.02562 * 10 9 8 12 12 N 1.34767 * 120.00277 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00379 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47518 * 180.02562 * 13 12 10 15 15 H 1.09003 * 110.05237 * 306.41582 * 14 13 12 16 16 C 1.53872 * 110.03323 * 67.83559 * 14 13 12 17 17 C 1.54266 * 106.60044 * 119.28544 * 16 14 13 18 18 C 1.54893 * 104.19500 * 23.61099 * 17 16 14 19 19 H 1.09000 * 110.75571 * 80.37081 * 18 17 16 20 20 N 1.46501 * 110.75534 * 203.74291 * 18 17 16 21 21 C 1.36933 * 119.99780 * 268.32930 * 20 18 17 22 22 H 1.07997 * 120.00184 * 359.97438 * 21 20 18 23 23 C 1.38822 * 119.99843 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99601 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 119.99979 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47469 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47257 * 120.00098 * 25 23 21 28 28 H 1.48497 * 109.47110 * 239.99988 * 25 23 21 29 29 C 1.54266 * 110.03393 * 185.00113 * 14 13 12 30 30 H 1.09000 * 109.46894 * 270.00401 * 1 2 3 31 31 H 1.09005 * 109.46974 * 29.99564 * 1 2 3 32 32 H 1.08993 * 109.47306 * 150.00297 * 1 2 3 33 33 H 1.07992 * 126.34629 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.46972 * 149.69011 * 7 6 5 35 35 H 1.08996 * 109.47313 * 29.68640 * 7 6 5 36 36 H 1.09006 * 109.46921 * 60.00612 * 9 8 7 37 37 H 1.08991 * 109.47470 * 300.00358 * 9 8 7 38 38 H 0.96997 * 120.00144 * 0.02562 * 12 10 9 39 39 H 1.09010 * 109.47131 * 60.00038 * 13 12 10 40 40 H 1.09003 * 109.47290 * 300.00349 * 13 12 10 41 41 H 1.09002 * 110.03208 * 238.56771 * 16 14 13 42 42 H 1.08996 * 110.03362 * 359.97438 * 16 14 13 43 43 H 1.09002 * 110.48438 * 142.28717 * 17 16 14 44 44 H 1.08998 * 110.48431 * 264.79545 * 17 16 14 45 45 H 0.96999 * 119.99563 * 88.32258 * 20 18 17 46 46 H 0.97007 * 119.99810 * 180.02562 * 24 23 21 47 47 H 1.09001 * 110.48620 * 335.78481 * 29 14 13 48 48 H 1.09004 * 110.48798 * 98.42315 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5090 0.6431 -0.0006 5 7 3.5090 -0.6430 0.0048 6 6 2.2801 -1.0823 -0.0006 7 6 1.8477 -2.5260 -0.0007 8 8 1.7105 -2.9819 -1.3480 9 6 1.3023 -4.3467 -1.4611 10 6 1.1908 -4.7188 -2.9172 11 8 1.4372 -3.8963 -3.7739 12 7 0.8174 -5.9654 -3.2675 13 6 0.7095 -6.3273 -4.6830 14 6 0.2711 -7.7881 -4.8040 15 1 0.9391 -8.4278 -4.2272 16 6 -1.1749 -7.9478 -4.3027 17 6 -2.0000 -8.4709 -5.4966 18 6 -0.9536 -9.1557 -6.4106 19 1 -0.7166 -10.1549 -6.0453 20 7 -1.4281 -9.2066 -7.7956 21 6 -2.1245 -10.2983 -8.2410 22 1 -2.3235 -11.1219 -7.5714 23 6 -2.5747 -10.3463 -9.5534 24 7 -2.3316 -9.3427 -10.3695 25 14 -3.5240 -11.8357 -10.1612 26 1 -3.6627 -12.8189 -9.0568 27 1 -4.8719 -11.4112 -10.6175 28 1 -2.7927 -12.4610 -11.2922 29 6 0.2742 -8.2199 -6.2850 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5137 33 1 1.9701 2.1170 0.0004 34 1 0.8910 -2.6188 0.5134 35 1 2.5961 -3.1295 0.5127 36 1 0.3344 -4.4777 -0.9771 37 1 2.0397 -4.9877 -0.9781 38 1 0.6200 -6.6231 -2.5825 39 1 1.6779 -6.1970 -5.1662 40 1 -0.0272 -5.6860 -5.1669 41 1 -1.2087 -8.6650 -3.4826 42 1 -1.5642 -6.9846 -3.9728 43 1 -2.7430 -9.1936 -5.1593 44 1 -2.4825 -7.6444 -6.0182 45 1 -1.2491 -8.4669 -8.3971 46 1 -2.6465 -9.3761 -11.2865 47 1 0.1610 -7.3526 -6.9355 48 1 1.1910 -8.7593 -6.5232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691655792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:28 Heat of formation + Delta-G solvation = 8.192722 kcal Electronic energy + Delta-G solvation = -27821.217872 eV Core-core repulsion = 23720.100674 eV Total energy + Delta-G solvation = -4101.117198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.55464 -40.09679 -38.51603 -37.79932 -35.53075 -34.97447 -33.43275 -32.16944 -30.90266 -29.59906 -28.58008 -28.16693 -27.25871 -26.42877 -24.13201 -23.06415 -22.85457 -21.52398 -20.92953 -19.75275 -19.44758 -17.99414 -17.60934 -17.30980 -17.08451 -16.89212 -16.54909 -15.92688 -15.65528 -15.41107 -15.22683 -14.84298 -14.63313 -13.98711 -13.95757 -13.80216 -13.48893 -13.35508 -13.09158 -12.85042 -12.53677 -12.50118 -12.18539 -11.93569 -11.86584 -11.20219 -10.90203 -10.83897 -10.81955 -10.68380 -10.63257 -10.59958 -10.38448 -10.30415 -10.15352 -10.07773 -9.85492 -9.74926 -9.66889 -9.21871 -8.90025 -6.96100 -5.78182 -3.06838 1.15824 1.93748 2.29071 2.38935 2.68712 3.41726 3.43884 3.47253 3.49681 3.93926 4.02015 4.12136 4.28531 4.39932 4.43625 4.56573 4.57673 4.60564 4.70083 4.76443 4.78115 4.89226 5.02130 5.04032 5.34457 5.49257 5.50769 5.62605 5.64430 5.70088 5.85862 5.92427 5.98076 6.01019 6.17014 6.24618 6.29645 6.31518 6.38385 6.42903 6.53794 6.68022 6.84462 7.07672 7.27294 7.69295 8.01150 8.27868 8.40603 9.51570 10.10460 10.44366 11.44483 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.001479 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.486581 B =18924.536842 C =19053.759833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.468 5.468 3 C 0.157 3.843 4 N -0.296 5.296 5 N -0.270 5.270 6 C 0.173 3.827 7 C 0.150 3.850 8 O -0.357 6.357 9 C 0.045 3.955 10 C 0.510 3.490 11 O -0.517 6.517 12 N -0.725 5.725 13 C 0.128 3.872 14 C -0.100 4.100 15 H 0.074 0.926 16 C -0.120 4.120 17 C -0.145 4.145 18 C 0.177 3.823 19 H 0.056 0.944 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.123 4.123 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.069 0.931 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 15.330 28.017 32.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.160 5.160 3 C -0.130 4.130 4 N -0.136 5.136 5 N -0.113 5.113 6 C -0.094 4.094 7 C 0.071 3.929 8 O -0.273 6.273 9 C -0.035 4.035 10 C 0.294 3.706 11 O -0.392 6.392 12 N -0.378 5.378 13 C 0.005 3.995 14 C -0.120 4.120 15 H 0.093 0.907 16 C -0.158 4.158 17 C -0.185 4.185 18 C 0.066 3.934 19 H 0.074 0.926 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.163 4.163 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.234 0.766 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.526 15.879 27.156 31.939 hybrid contribution -2.250 -0.847 -0.061 2.406 sum 3.275 15.032 27.095 31.158 Atomic orbital electron populations 1.22202 0.74912 1.06049 1.04231 1.46190 1.09491 1.06685 1.53593 1.26535 0.87141 0.95002 1.04362 1.74312 1.18118 1.03031 1.18138 1.74280 1.16886 1.03359 1.16747 1.24241 0.87489 0.91363 1.06306 1.20501 1.01103 0.86127 0.85162 1.88098 1.89333 1.25677 1.24229 1.22268 1.01284 0.84485 0.95477 1.20113 0.77749 0.82513 0.90245 1.90780 1.47566 1.49182 1.51661 1.45928 1.70067 1.12290 1.09539 1.21601 1.01909 0.95825 0.80166 1.21964 0.97376 0.94005 0.98628 0.90739 1.22210 0.94535 1.00398 0.98668 1.23084 0.99108 1.00423 0.95926 1.21156 0.90210 0.95647 0.86358 0.92615 1.42394 1.65338 1.21677 1.06589 1.19310 1.26743 0.96449 0.94639 0.91123 1.24755 1.01708 0.98041 0.96503 1.69674 1.51236 1.31282 1.05845 0.86130 0.79431 0.82170 0.78530 1.20572 1.21909 1.21868 1.22620 0.99925 1.00314 0.93393 0.89660 0.88509 0.88662 0.76168 0.90942 0.88991 0.89870 0.89556 0.76560 0.91338 0.91032 0.92419 0.92447 0.92597 0.91874 0.78173 0.93542 0.91213 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 10.90 59.85 0.65 0.81 16 2 N -0.47 -3.23 3.15 -122.69 -0.39 -3.61 16 3 C 0.16 1.19 12.74 -89.94 -1.15 0.04 16 4 N -0.30 -3.60 12.21 29.69 0.36 -3.24 16 5 N -0.27 -3.51 12.21 32.79 0.40 -3.11 16 6 C 0.17 1.65 7.66 -154.99 -1.19 0.46 16 7 C 0.15 0.97 6.11 36.01 0.22 1.19 16 8 O -0.36 -3.50 9.86 -55.14 -0.54 -4.04 16 9 C 0.04 0.30 6.42 36.01 0.23 0.53 16 10 C 0.51 5.62 7.91 -10.99 -0.09 5.53 16 11 O -0.52 -8.61 16.50 -14.36 -0.24 -8.85 16 12 N -0.72 -6.55 5.34 -60.29 -0.32 -6.87 16 13 C 0.13 1.48 4.68 -4.05 -0.02 1.47 16 14 C -0.10 -1.16 2.96 -89.50 -0.27 -1.43 16 15 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 16 C -0.12 -1.42 6.18 -25.61 -0.16 -1.58 16 17 C -0.14 -2.39 6.51 -25.07 -0.16 -2.55 16 18 C 0.18 3.35 3.56 -65.94 -0.23 3.11 16 19 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 20 N -0.72 -17.74 5.23 -51.50 -0.27 -18.00 16 21 C -0.24 -6.58 9.96 -15.06 -0.15 -6.73 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 25 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 C -0.12 -1.90 5.98 -25.07 -0.15 -2.05 16 30 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.09 0.23 7.81 -51.93 -0.41 -0.18 16 33 H 0.22 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.07 0.21 7.85 -51.93 -0.41 -0.20 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.40 2.30 8.35 -40.82 -0.34 1.95 16 39 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.64 7.61 -51.93 -0.40 0.24 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.38 10.13 7.76 -40.82 -0.32 9.81 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.07 1.14 7.73 -51.93 -0.40 0.74 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 402.63 15.07 6.07 6.07 Total: -1.00 -39.76 402.63 -9.51 -49.27 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.73 Total: 4.26 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.55 Total: -1.69 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.51 Total: -62.20 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.78 Total: -12.89 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -39.76 -9.51 -49.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691655792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.462 kcal (2) G-P(sol) polarization free energy of solvation -39.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds