Wall clock time and date at job start Tue Mar 31 2020 21:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35501 * 126.97786 * 2 1 4 4 N 1.30520 * 107.30411 * 180.02562 * 3 2 1 5 5 N 1.28604 * 109.67221 * 359.72812 * 4 3 2 6 6 C 1.30515 * 109.67299 * 0.44989 * 5 4 3 7 7 C 1.50701 * 126.34650 * 179.82613 * 6 5 4 8 8 O 1.42896 * 109.46965 * 269.68570 * 7 6 5 9 9 C 1.42900 * 114.00044 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47413 * 180.02562 * 9 8 7 11 11 O 1.21288 * 119.99602 * 0.02562 * 10 9 8 12 12 N 1.34767 * 120.00277 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00379 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47518 * 180.02562 * 13 12 10 15 15 H 1.09003 * 110.05237 * 306.41582 * 14 13 12 16 16 C 1.53872 * 110.03323 * 67.83559 * 14 13 12 17 17 C 1.54266 * 106.60044 * 119.28544 * 16 14 13 18 18 C 1.54893 * 104.19500 * 23.61099 * 17 16 14 19 19 H 1.09000 * 110.75571 * 80.37081 * 18 17 16 20 20 N 1.46501 * 110.75534 * 203.74291 * 18 17 16 21 21 C 1.36933 * 119.99780 * 268.32930 * 20 18 17 22 22 H 1.07997 * 120.00184 * 359.97438 * 21 20 18 23 23 C 1.38822 * 119.99843 * 179.97438 * 21 20 18 24 24 N 1.31617 * 119.99601 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 119.99979 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47469 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47257 * 120.00098 * 25 23 21 28 28 H 1.48497 * 109.47110 * 239.99988 * 25 23 21 29 29 C 1.54266 * 110.03393 * 185.00113 * 14 13 12 30 30 H 1.09000 * 109.46894 * 270.00401 * 1 2 3 31 31 H 1.09005 * 109.46974 * 29.99564 * 1 2 3 32 32 H 1.08993 * 109.47306 * 150.00297 * 1 2 3 33 33 H 1.07992 * 126.34629 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.46972 * 149.69011 * 7 6 5 35 35 H 1.08996 * 109.47313 * 29.68640 * 7 6 5 36 36 H 1.09006 * 109.46921 * 60.00612 * 9 8 7 37 37 H 1.08991 * 109.47470 * 300.00358 * 9 8 7 38 38 H 0.96997 * 120.00144 * 0.02562 * 12 10 9 39 39 H 1.09010 * 109.47131 * 60.00038 * 13 12 10 40 40 H 1.09003 * 109.47290 * 300.00349 * 13 12 10 41 41 H 1.09002 * 110.03208 * 238.56771 * 16 14 13 42 42 H 1.08996 * 110.03362 * 359.97438 * 16 14 13 43 43 H 1.09002 * 110.48438 * 142.28717 * 17 16 14 44 44 H 1.08998 * 110.48431 * 264.79545 * 17 16 14 45 45 H 0.96999 * 119.99563 * 88.32258 * 20 18 17 46 46 H 0.97007 * 119.99810 * 180.02562 * 24 23 21 47 47 H 1.09001 * 110.48620 * 335.78481 * 29 14 13 48 48 H 1.09004 * 110.48798 * 98.42315 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5090 0.6431 -0.0006 5 7 3.5090 -0.6430 0.0048 6 6 2.2801 -1.0823 -0.0006 7 6 1.8477 -2.5260 -0.0007 8 8 1.7105 -2.9819 -1.3480 9 6 1.3023 -4.3467 -1.4611 10 6 1.1908 -4.7188 -2.9172 11 8 1.4372 -3.8963 -3.7739 12 7 0.8174 -5.9654 -3.2675 13 6 0.7095 -6.3273 -4.6830 14 6 0.2711 -7.7881 -4.8040 15 1 0.9391 -8.4278 -4.2272 16 6 -1.1749 -7.9478 -4.3027 17 6 -2.0000 -8.4709 -5.4966 18 6 -0.9536 -9.1557 -6.4106 19 1 -0.7166 -10.1549 -6.0453 20 7 -1.4281 -9.2066 -7.7956 21 6 -2.1245 -10.2983 -8.2410 22 1 -2.3235 -11.1219 -7.5714 23 6 -2.5747 -10.3463 -9.5534 24 7 -2.3316 -9.3427 -10.3695 25 14 -3.5240 -11.8357 -10.1612 26 1 -3.6627 -12.8189 -9.0568 27 1 -4.8719 -11.4112 -10.6175 28 1 -2.7927 -12.4610 -11.2922 29 6 0.2742 -8.2199 -6.2850 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5137 33 1 1.9701 2.1170 0.0004 34 1 0.8910 -2.6188 0.5134 35 1 2.5961 -3.1295 0.5127 36 1 0.3344 -4.4777 -0.9771 37 1 2.0397 -4.9877 -0.9781 38 1 0.6200 -6.6231 -2.5825 39 1 1.6779 -6.1970 -5.1662 40 1 -0.0272 -5.6860 -5.1669 41 1 -1.2087 -8.6650 -3.4826 42 1 -1.5642 -6.9846 -3.9728 43 1 -2.7430 -9.1936 -5.1593 44 1 -2.4825 -7.6444 -6.0182 45 1 -1.2491 -8.4669 -8.3971 46 1 -2.6465 -9.3761 -11.2865 47 1 0.1610 -7.3526 -6.9355 48 1 1.1910 -8.7593 -6.5232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691655792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:27 Heat of formation + Delta-G solvation = -20.364258 kcal Electronic energy + Delta-G solvation = -27822.456196 eV Core-core repulsion = 23720.100674 eV Total energy + Delta-G solvation = -4102.355522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.14564 -40.94477 -39.53663 -38.62041 -36.31348 -36.01730 -34.99812 -32.82481 -32.54652 -30.70993 -29.45375 -28.69113 -28.34053 -27.14722 -25.55375 -24.61250 -23.42120 -22.08977 -21.83917 -21.06980 -20.58911 -19.18066 -18.54948 -18.19663 -17.85436 -17.43618 -17.21659 -16.84141 -16.71636 -16.35806 -16.14067 -15.85275 -15.56413 -15.46424 -15.08112 -14.55142 -14.28508 -14.26237 -14.10399 -13.66404 -13.59561 -13.35792 -13.12288 -13.01671 -12.98317 -12.67262 -12.59727 -12.37462 -12.08055 -11.95744 -11.76637 -11.63923 -11.50204 -11.45879 -11.22259 -11.14443 -10.90673 -10.89675 -10.84193 -10.44477 -10.10734 -8.97503 -7.93953 -5.21981 0.62020 1.47248 1.47978 1.51609 1.57999 1.59503 1.68603 1.99710 2.56805 2.90973 3.38629 3.45454 3.63735 3.69271 3.76808 3.82138 3.85080 3.87025 3.97699 4.20289 4.26955 4.30865 4.34434 4.39402 4.41342 4.50967 4.59019 4.64708 4.67261 4.69054 4.80665 4.82377 4.86118 4.92530 5.09100 5.10931 5.15974 5.23227 5.36801 5.47648 5.51347 5.58581 5.65504 5.84223 5.92853 6.28965 6.59363 7.27514 7.33968 7.63861 8.13207 8.34234 9.30091 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.001479 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.486581 B =18924.536842 C =19053.759833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.466 5.466 3 C 0.167 3.833 4 N -0.353 5.353 5 N -0.327 5.327 6 C 0.164 3.836 7 C 0.150 3.850 8 O -0.398 6.398 9 C 0.050 3.950 10 C 0.503 3.497 11 O -0.585 6.585 12 N -0.706 5.706 13 C 0.134 3.866 14 C -0.082 4.082 15 H 0.107 0.893 16 C -0.106 4.106 17 C -0.140 4.140 18 C 0.163 3.837 19 H 0.057 0.943 20 N -0.737 5.737 21 C -0.237 4.237 22 H 0.078 0.922 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.972 3.028 26 H -0.263 1.263 27 H -0.296 1.296 28 H -0.295 1.295 29 C -0.120 4.120 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.263 0.737 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.422 0.578 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.036 0.964 45 H 0.370 0.630 46 H 0.249 0.751 47 H 0.050 0.950 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 14.333 31.622 34.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.156 5.156 3 C -0.122 4.122 4 N -0.192 5.192 5 N -0.169 5.169 6 C -0.105 4.105 7 C 0.072 3.928 8 O -0.316 6.316 9 C -0.029 4.029 10 C 0.290 3.710 11 O -0.465 6.465 12 N -0.361 5.361 13 C 0.010 3.990 14 C -0.101 4.101 15 H 0.125 0.875 16 C -0.144 4.144 17 C -0.181 4.181 18 C 0.054 3.946 19 H 0.076 0.924 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.802 3.198 26 H -0.187 1.187 27 H -0.223 1.223 28 H -0.223 1.223 29 C -0.159 4.159 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.279 0.721 34 H 0.133 0.867 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.260 0.740 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.202 0.798 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.199 14.827 30.870 34.502 hybrid contribution -1.871 -0.504 -1.136 2.246 sum 2.328 14.322 29.733 33.085 Atomic orbital electron populations 1.22571 0.72091 1.07041 1.06255 1.46482 1.11064 1.05704 1.52373 1.27313 0.86202 0.96757 1.01889 1.74166 1.20963 1.03276 1.20835 1.74136 1.19474 1.04110 1.19177 1.24840 0.87182 0.93262 1.05230 1.20784 1.03542 0.84337 0.84116 1.88031 1.89957 1.27322 1.26283 1.22430 1.04579 0.83760 0.92143 1.21034 0.76092 0.81980 0.91886 1.90758 1.50638 1.51152 1.53923 1.45699 1.69059 1.12480 1.08820 1.21311 1.00499 0.95421 0.81741 1.21824 0.98133 0.94216 0.95962 0.87532 1.22141 0.93182 1.01729 0.97310 1.22909 0.98787 0.99255 0.97138 1.21494 0.92299 0.96825 0.83939 0.92445 1.42640 1.65526 1.20585 1.08807 1.19728 1.25475 0.96997 0.94701 0.90364 1.25580 1.03695 1.00947 0.97021 1.69839 1.53233 1.33480 1.05859 0.85079 0.77517 0.79183 0.78045 1.18718 1.22313 1.22262 1.22523 0.98352 0.98849 0.96144 0.87043 0.86737 0.88546 0.72104 0.86687 0.87973 0.85436 0.86351 0.74016 0.92723 0.93364 0.89084 0.91182 0.92988 0.94473 0.79834 0.94194 0.93123 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.09 10.90 127.77 1.39 1.48 16 2 N -0.47 -5.65 3.15 -542.08 -1.71 -7.36 16 3 C 0.17 2.38 12.74 180.11 2.30 4.68 16 4 N -0.35 -8.87 12.21 -59.99 -0.73 -9.61 16 5 N -0.33 -8.77 12.21 -50.16 -0.61 -9.38 16 6 C 0.16 3.00 7.66 137.98 1.06 4.05 16 7 C 0.15 1.58 6.11 71.24 0.44 2.01 16 8 O -0.40 -7.04 9.86 -129.94 -1.28 -8.33 16 9 C 0.05 0.48 6.42 71.24 0.46 0.94 16 10 C 0.50 10.17 7.91 87.66 0.69 10.86 16 11 O -0.59 -19.74 16.50 15.98 0.26 -19.48 16 12 N -0.71 -10.69 5.34 -463.06 -2.47 -13.16 16 13 C 0.13 2.95 4.68 86.38 0.40 3.35 16 14 C -0.08 -1.68 2.96 -10.07 -0.03 -1.71 16 15 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 16 C -0.11 -2.14 6.18 31.32 0.19 -1.95 16 17 C -0.14 -4.49 6.51 31.67 0.21 -4.28 16 18 C 0.16 6.08 3.56 46.28 0.16 6.25 16 19 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 20 N -0.74 -37.08 5.23 -316.84 -1.66 -38.73 16 21 C -0.24 -13.10 9.96 84.04 0.84 -12.26 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 23 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 24 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 25 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 26 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 29 C -0.12 -3.62 5.98 31.67 0.19 -3.43 16 30 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.11 -0.22 8.14 -2.38 -0.02 -0.24 16 32 H 0.10 0.17 7.81 -2.39 -0.02 0.15 16 33 H 0.26 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.12 0.15 7.85 -2.39 -0.02 0.13 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.13 0.13 8.14 -2.38 -0.02 0.11 16 37 H 0.12 0.41 8.14 -2.39 -0.02 0.40 16 38 H 0.42 2.76 8.35 -92.71 -0.77 1.99 16 39 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.30 7.61 -2.39 -0.02 1.28 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.37 20.36 7.76 -92.71 -0.72 19.64 16 46 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 47 H 0.05 1.72 7.73 -2.39 -0.02 1.70 16 48 H 0.07 1.99 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -94.80 402.63 2.36 -92.45 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.52 Total: 19.73 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 8.76 Total: 5.82 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -6.90 Total: -138.36 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -1.02 Total: -27.81 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -94.80 2.36 -92.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691655792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.081 kcal (2) G-P(sol) polarization free energy of solvation -94.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds