Wall clock time and date at job start Tue Mar 31 2020 20:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47319 * 2 1 4 4 C 1.42896 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.91563 * 26.09063 * 4 3 2 6 6 C 1.55121 * 111.16296 * 262.16894 * 4 3 2 7 7 N 1.47425 * 104.94720 * 205.12802 * 6 4 3 8 8 C 1.34773 * 125.65181 * 204.03979 * 7 6 4 9 9 O 1.21280 * 119.99978 * 179.97438 * 8 7 6 10 10 C 1.50696 * 120.00097 * 359.95433 * 8 7 6 11 11 C 1.53003 * 109.47408 * 179.97438 * 10 8 7 12 12 C 1.50691 * 109.47281 * 180.02562 * 11 10 8 13 13 C 1.35358 * 126.91358 * 274.68617 * 12 11 10 14 14 N 1.33767 * 106.49719 * 179.90695 * 13 12 11 15 15 N 1.28638 * 108.88545 * 0.36541 * 14 13 12 16 16 N 1.28708 * 110.17996 * 359.76461 * 15 14 13 17 17 H 0.97000 * 125.87094 * 180.02562 * 16 15 14 18 18 C 1.47025 * 108.69834 * 24.00105 * 7 6 4 19 19 C 1.54322 * 107.27238 * 358.94200 * 18 7 6 20 20 H 1.09012 * 110.71855 * 96.34581 * 19 18 7 21 21 C 1.53001 * 110.72148 * 219.43771 * 19 18 7 22 22 N 1.46496 * 109.47205 * 291.16242 * 21 19 18 23 23 C 1.36945 * 119.99718 * 179.97438 * 22 21 19 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 21 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 21 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47174 * 270.00277 * 27 25 23 29 29 H 1.48501 * 109.47062 * 30.00228 * 27 25 23 30 30 H 1.48499 * 109.46981 * 150.00382 * 27 25 23 31 31 H 1.09005 * 109.46849 * 300.00160 * 1 2 3 32 32 H 1.08999 * 109.46808 * 59.99455 * 1 2 3 33 33 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47013 * 239.99815 * 2 1 3 35 35 H 1.08997 * 109.46968 * 119.99782 * 2 1 3 36 36 H 1.09005 * 110.42314 * 86.19639 * 6 4 3 37 37 H 1.09003 * 110.21205 * 323.95085 * 6 4 3 38 38 H 1.09000 * 109.47215 * 300.00509 * 10 8 7 39 39 H 1.09006 * 109.46836 * 60.00327 * 10 8 7 40 40 H 1.08999 * 109.46617 * 300.00471 * 11 10 8 41 41 H 1.09000 * 109.46679 * 59.99936 * 11 10 8 42 42 H 1.07998 * 126.74512 * 0.03847 * 13 12 11 43 43 H 1.08998 * 109.88524 * 239.51957 * 18 7 6 44 44 H 1.09005 * 109.88100 * 118.36200 * 18 7 6 45 45 H 1.08997 * 109.46922 * 171.15284 * 21 19 18 46 46 H 1.09000 * 109.46483 * 51.16103 * 21 19 18 47 47 H 0.96996 * 120.00499 * 359.97438 * 22 21 19 48 48 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8909 0.5793 -0.4487 6 6 3.9742 1.7006 1.4323 7 7 5.2637 2.3887 1.2396 8 6 6.2883 2.3970 2.1151 9 8 7.3073 2.9990 1.8504 10 6 6.1676 1.6586 3.4232 11 6 7.4599 1.8265 4.2249 12 6 7.3394 1.0876 5.5326 13 6 6.7899 1.5499 6.6800 14 7 6.8967 0.5633 7.5769 15 7 7.4810 -0.4405 7.0240 16 7 7.7641 -0.1695 5.7980 17 1 8.2056 -0.7643 5.1718 18 6 5.2472 3.0636 -0.0665 19 6 3.8861 2.7545 -0.7248 20 1 3.1788 3.5648 -0.5472 21 6 4.0545 2.5049 -2.2249 22 7 4.4246 3.7568 -2.8897 23 6 4.6306 3.7782 -4.2434 24 1 4.5206 2.8721 -4.8207 25 6 4.9807 4.9644 -4.8735 26 7 5.1153 6.0686 -4.1698 27 14 5.2625 4.9935 -6.7199 28 1 6.6913 4.7087 -7.0072 29 1 4.4124 3.9618 -7.3666 30 1 4.9077 6.3330 -7.2537 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 4.1240 0.7512 1.9467 37 1 3.2871 2.3331 1.9944 38 1 5.3310 2.0631 3.9929 39 1 5.9963 0.5999 3.2283 40 1 8.2961 1.4216 3.6548 41 1 7.6316 2.8851 4.4197 42 1 6.3496 2.5232 6.8392 43 1 6.0558 2.6833 -0.6907 44 1 5.3568 4.1394 0.0707 45 1 3.1161 2.1368 -2.6396 46 1 4.8376 1.7636 -2.3841 47 1 4.5237 4.5705 -2.3712 48 1 5.3603 6.8974 -4.6100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691766280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:38 Heat of formation + Delta-G solvation = 21.422392 kcal Electronic energy + Delta-G solvation = -28887.648968 eV Core-core repulsion = 24787.105451 eV Total energy + Delta-G solvation = -4100.543517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.68349 -40.36612 -38.71208 -36.75152 -34.81804 -34.75241 -33.53872 -32.38873 -31.39603 -30.54860 -29.54686 -28.40622 -26.28089 -24.63496 -23.52809 -23.31257 -22.93549 -21.98983 -21.92058 -20.20541 -19.37328 -18.67062 -17.56318 -17.26493 -16.75282 -16.52261 -16.03542 -15.96775 -15.49819 -14.94828 -14.74512 -14.50788 -14.38014 -14.18951 -13.73551 -13.50765 -13.34236 -13.17961 -12.91498 -12.80020 -12.63798 -12.48425 -12.23807 -12.11315 -11.79499 -11.72993 -11.53621 -11.22670 -11.20679 -11.08601 -10.96841 -10.78661 -10.76356 -10.50532 -10.15752 -10.03400 -9.81315 -9.55689 -9.52489 -8.90994 -8.70909 -6.96227 -5.78368 -3.07999 1.13282 2.16683 2.32333 2.47789 2.75375 3.42606 3.47152 3.49353 3.51599 3.96681 4.21713 4.33237 4.39410 4.47829 4.52658 4.61184 4.73320 4.82603 4.88099 4.89551 4.99036 5.03417 5.05371 5.17094 5.18843 5.27005 5.38574 5.50325 5.53481 5.53995 5.60069 5.64723 5.74256 5.75310 5.85306 5.96383 6.00893 6.16563 6.22563 6.26548 6.41520 6.64232 6.69074 7.11698 7.38236 7.67402 8.01176 8.05817 8.39655 9.51156 10.06716 10.41402 11.44270 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.002426 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.697267 B =11538.393268 C =13559.594614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.084 3.916 5 H 0.081 0.919 6 C 0.080 3.920 7 N -0.614 5.614 8 C 0.526 3.474 9 O -0.535 6.535 10 C -0.132 4.132 11 C -0.034 4.034 12 C -0.006 4.006 13 C -0.045 4.045 14 N -0.266 5.266 15 N -0.084 5.084 16 N -0.390 5.390 17 H 0.448 0.552 18 C 0.117 3.883 19 C -0.101 4.101 20 H 0.097 0.903 21 C 0.166 3.834 22 N -0.731 5.731 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.282 1.282 30 H -0.291 1.291 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.192 0.808 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.027 0.973 46 H 0.019 0.981 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 -14.568 18.370 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.024 3.976 5 H 0.099 0.901 6 C -0.043 4.043 7 N -0.349 5.349 8 C 0.315 3.685 9 O -0.411 6.411 10 C -0.173 4.173 11 C -0.074 4.074 12 C -0.140 4.140 13 C -0.203 4.203 14 N -0.133 5.133 15 N -0.064 5.064 16 N -0.110 5.110 17 H 0.293 0.707 18 C -0.004 4.004 19 C -0.120 4.120 20 H 0.115 0.885 21 C 0.038 3.962 22 N -0.376 5.376 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.208 1.208 30 H -0.217 1.217 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.209 0.791 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.045 0.955 46 H 0.037 0.963 47 H 0.218 0.782 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.829 -15.112 19.345 24.616 hybrid contribution 0.469 0.492 -2.143 2.249 sum -1.360 -14.620 17.202 22.616 Atomic orbital electron populations 1.21742 0.93670 1.02119 1.03371 1.22552 0.95749 0.83871 1.00005 1.87981 1.19533 1.26259 1.94591 1.23226 0.81595 0.99169 0.93561 0.90111 1.22782 0.85488 0.97339 0.98735 1.48410 1.14891 1.52107 1.19521 1.20107 0.82201 0.81405 0.84820 1.90764 1.28702 1.44357 1.77315 1.21644 0.99784 1.01816 0.94035 1.19903 0.97902 1.01315 0.88301 1.22345 1.04388 0.87243 0.99979 1.23486 1.05776 1.01514 0.89481 1.75120 1.13674 0.97885 1.26623 1.78309 1.15779 1.21141 0.91169 1.45167 1.41571 1.12765 1.11545 0.70662 1.22088 0.97908 0.98324 0.82113 1.22578 0.95657 0.96970 0.96829 0.88467 1.20616 0.97428 0.90695 0.87472 1.42324 1.83693 1.05843 1.05704 1.19185 1.39487 0.94676 0.83924 0.91194 1.24749 1.02455 0.95652 0.97993 1.69658 1.54424 0.99305 1.34572 0.86188 0.77877 0.76785 0.85309 1.21701 1.20777 1.21739 0.91906 0.91515 0.91248 0.93038 0.93625 0.90770 0.90093 0.88090 0.89045 0.89308 0.87515 0.79087 0.90200 0.90449 0.95482 0.96291 0.78164 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.49 6.49 37.16 0.24 0.73 16 3 O -0.37 -4.38 10.16 -35.23 -0.36 -4.74 16 4 C 0.08 0.97 3.00 -24.47 -0.07 0.90 16 5 H 0.08 0.87 7.74 -51.93 -0.40 0.47 16 6 C 0.08 0.77 6.44 -2.41 -0.02 0.75 16 7 N -0.61 -7.43 3.33 -170.38 -0.57 -8.00 16 8 C 0.53 6.19 7.85 -10.99 -0.09 6.11 16 9 O -0.53 -8.49 16.31 5.56 0.09 -8.40 16 10 C -0.13 -0.91 4.69 -27.88 -0.13 -1.04 16 11 C -0.03 -0.22 5.07 -27.89 -0.14 -0.36 16 12 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 13 C -0.05 -0.37 11.99 -17.74 -0.21 -0.58 16 14 N -0.27 -2.93 12.41 30.24 0.38 -2.56 16 15 N -0.08 -0.85 13.38 60.35 0.81 -0.04 16 16 N -0.39 -2.61 6.98 33.54 0.23 -2.38 16 17 H 0.45 1.45 8.96 -190.40 -1.71 -0.26 16 18 C 0.12 1.80 6.27 -3.06 -0.02 1.78 16 19 C -0.10 -1.53 2.71 -88.79 -0.24 -1.77 16 20 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 21 C 0.17 3.16 5.59 -4.04 -0.02 3.14 16 22 N -0.73 -18.02 5.48 -59.91 -0.33 -18.35 16 23 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 27 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.51 7.48 -51.93 -0.39 0.12 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.48 7.85 -51.93 -0.41 0.07 16 40 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 41 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.08 1.38 7.73 -51.93 -0.40 0.98 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 47 H 0.38 9.99 7.60 -40.82 -0.31 9.68 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -35.61 401.55 -8.17 -43.77 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -9.07 Total: 3.68 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.10 Total: 0.99 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 1.25 Total: -58.62 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.27 Total: -13.14 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.61 -8.17 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691766280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.197 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds