Wall clock time and date at job start Tue Mar 31 2020 20:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47319 * 2 1 4 4 C 1.42896 * 114.00299 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.91563 * 26.09063 * 4 3 2 6 6 C 1.55121 * 111.16296 * 262.16894 * 4 3 2 7 7 N 1.47425 * 104.94720 * 205.12802 * 6 4 3 8 8 C 1.34773 * 125.65181 * 204.03979 * 7 6 4 9 9 O 1.21280 * 119.99978 * 179.97438 * 8 7 6 10 10 C 1.50696 * 120.00097 * 359.95433 * 8 7 6 11 11 C 1.53003 * 109.47408 * 179.97438 * 10 8 7 12 12 C 1.50691 * 109.47281 * 180.02562 * 11 10 8 13 13 C 1.35358 * 126.91358 * 274.68617 * 12 11 10 14 14 N 1.33767 * 106.49719 * 179.90695 * 13 12 11 15 15 N 1.28638 * 108.88545 * 0.36541 * 14 13 12 16 16 N 1.28708 * 110.17996 * 359.76461 * 15 14 13 17 17 H 0.97000 * 125.87094 * 180.02562 * 16 15 14 18 18 C 1.47025 * 108.69834 * 24.00105 * 7 6 4 19 19 C 1.54322 * 107.27238 * 358.94200 * 18 7 6 20 20 H 1.09012 * 110.71855 * 96.34581 * 19 18 7 21 21 C 1.53001 * 110.72148 * 219.43771 * 19 18 7 22 22 N 1.46496 * 109.47205 * 291.16242 * 21 19 18 23 23 C 1.36945 * 119.99718 * 179.97438 * 22 21 19 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 21 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 21 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47174 * 270.00277 * 27 25 23 29 29 H 1.48501 * 109.47062 * 30.00228 * 27 25 23 30 30 H 1.48499 * 109.46981 * 150.00382 * 27 25 23 31 31 H 1.09005 * 109.46849 * 300.00160 * 1 2 3 32 32 H 1.08999 * 109.46808 * 59.99455 * 1 2 3 33 33 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47013 * 239.99815 * 2 1 3 35 35 H 1.08997 * 109.46968 * 119.99782 * 2 1 3 36 36 H 1.09005 * 110.42314 * 86.19639 * 6 4 3 37 37 H 1.09003 * 110.21205 * 323.95085 * 6 4 3 38 38 H 1.09000 * 109.47215 * 300.00509 * 10 8 7 39 39 H 1.09006 * 109.46836 * 60.00327 * 10 8 7 40 40 H 1.08999 * 109.46617 * 300.00471 * 11 10 8 41 41 H 1.09000 * 109.46679 * 59.99936 * 11 10 8 42 42 H 1.07998 * 126.74512 * 0.03847 * 13 12 11 43 43 H 1.08998 * 109.88524 * 239.51957 * 18 7 6 44 44 H 1.09005 * 109.88100 * 118.36200 * 18 7 6 45 45 H 1.08997 * 109.46922 * 171.15284 * 21 19 18 46 46 H 1.09000 * 109.46483 * 51.16103 * 21 19 18 47 47 H 0.96996 * 120.00499 * 359.97438 * 22 21 19 48 48 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8909 0.5793 -0.4487 6 6 3.9742 1.7006 1.4323 7 7 5.2637 2.3887 1.2396 8 6 6.2883 2.3970 2.1151 9 8 7.3073 2.9990 1.8504 10 6 6.1676 1.6586 3.4232 11 6 7.4599 1.8265 4.2249 12 6 7.3394 1.0876 5.5326 13 6 6.7899 1.5499 6.6800 14 7 6.8967 0.5633 7.5769 15 7 7.4810 -0.4405 7.0240 16 7 7.7641 -0.1695 5.7980 17 1 8.2056 -0.7643 5.1718 18 6 5.2472 3.0636 -0.0665 19 6 3.8861 2.7545 -0.7248 20 1 3.1788 3.5648 -0.5472 21 6 4.0545 2.5049 -2.2249 22 7 4.4246 3.7568 -2.8897 23 6 4.6306 3.7782 -4.2434 24 1 4.5206 2.8721 -4.8207 25 6 4.9807 4.9644 -4.8735 26 7 5.1153 6.0686 -4.1698 27 14 5.2625 4.9935 -6.7199 28 1 6.6913 4.7087 -7.0072 29 1 4.4124 3.9618 -7.3666 30 1 4.9077 6.3330 -7.2537 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 4.1240 0.7512 1.9467 37 1 3.2871 2.3331 1.9944 38 1 5.3310 2.0631 3.9929 39 1 5.9963 0.5999 3.2283 40 1 8.2961 1.4216 3.6548 41 1 7.6316 2.8851 4.4197 42 1 6.3496 2.5232 6.8392 43 1 6.0558 2.6833 -0.6907 44 1 5.3568 4.1394 0.0707 45 1 3.1161 2.1368 -2.6396 46 1 4.8376 1.7636 -2.3841 47 1 4.5237 4.5705 -2.3712 48 1 5.3603 6.8974 -4.6100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691766280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:36 Heat of formation + Delta-G solvation = -5.357128 kcal Electronic energy + Delta-G solvation = -28888.810215 eV Core-core repulsion = 24787.105451 eV Total energy + Delta-G solvation = -4101.704764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.28924 -41.35451 -39.66902 -37.76103 -36.44876 -35.47468 -34.17430 -33.91767 -32.44100 -31.54481 -30.64957 -29.40386 -27.53267 -25.90700 -24.73135 -23.95960 -23.83803 -23.11701 -22.57084 -21.46793 -20.29729 -19.30055 -19.14698 -18.38983 -17.85245 -17.23185 -16.84061 -16.76287 -16.64192 -16.26597 -15.79088 -15.49550 -15.32219 -15.19923 -15.02513 -14.74172 -14.62733 -14.18934 -13.90045 -13.79802 -13.54634 -13.30805 -13.17017 -13.09755 -12.82762 -12.74956 -12.69398 -12.41834 -12.31991 -12.20886 -12.18710 -11.95641 -11.80205 -11.74302 -11.60081 -11.58618 -11.06489 -10.95213 -10.47249 -10.15586 -9.74503 -9.02583 -7.96030 -5.25624 0.55357 1.46556 1.48537 1.52828 1.56880 1.57939 1.77171 1.94202 2.53868 2.67996 3.25194 3.37526 3.40327 3.51539 3.68612 3.83053 3.86681 3.99296 4.03977 4.10767 4.17956 4.26167 4.27910 4.32448 4.37770 4.47580 4.50338 4.55651 4.58644 4.65459 4.75975 4.77987 4.84808 4.95317 4.99933 5.02338 5.06745 5.11846 5.13566 5.21874 5.25259 5.36023 5.48044 5.98676 6.25425 6.30110 6.46693 7.08890 7.31998 7.43615 8.06176 8.29182 9.27454 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.002426 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.697267 B =11538.393268 C =13559.594614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.386 6.386 4 C 0.093 3.907 5 H 0.093 0.907 6 C 0.087 3.913 7 N -0.614 5.614 8 C 0.523 3.477 9 O -0.584 6.584 10 C -0.119 4.119 11 C -0.027 4.027 12 C 0.010 3.990 13 C -0.052 4.052 14 N -0.303 5.303 15 N -0.110 5.110 16 N -0.374 5.374 17 H 0.462 0.538 18 C 0.126 3.874 19 C -0.094 4.094 20 H 0.082 0.918 21 C 0.168 3.832 22 N -0.745 5.745 23 C -0.245 4.245 24 H 0.077 0.923 25 C -0.076 4.076 26 N -0.969 5.969 27 Si 0.974 3.026 28 H -0.287 1.287 29 H -0.268 1.268 30 H -0.296 1.296 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.213 0.787 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.026 0.974 46 H 0.024 0.976 47 H 0.374 0.626 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 -16.999 19.235 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.305 6.305 4 C 0.033 3.967 5 H 0.111 0.889 6 C -0.036 4.036 7 N -0.348 5.348 8 C 0.314 3.686 9 O -0.464 6.464 10 C -0.159 4.159 11 C -0.067 4.067 12 C -0.125 4.125 13 C -0.210 4.210 14 N -0.169 5.169 15 N -0.090 5.090 16 N -0.097 5.097 17 H 0.311 0.689 18 C 0.003 3.997 19 C -0.114 4.114 20 H 0.101 0.899 21 C 0.041 3.959 22 N -0.388 5.388 23 C -0.377 4.377 24 H 0.095 0.905 25 C -0.269 4.269 26 N -0.620 5.620 27 Si 0.803 3.197 28 H -0.215 1.215 29 H -0.192 1.192 30 H -0.222 1.222 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.229 0.771 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.042 0.958 47 H 0.205 0.795 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.640 -17.635 20.232 26.969 hybrid contribution 0.687 1.209 -2.431 2.801 sum -1.953 -16.426 17.801 24.300 Atomic orbital electron populations 1.21772 0.93228 1.03312 1.02543 1.22796 0.96165 0.82555 1.01358 1.87962 1.19335 1.28419 1.94764 1.23116 0.81998 0.97150 0.94388 0.88909 1.22925 0.83904 0.99205 0.97533 1.48484 1.16252 1.51897 1.18185 1.21046 0.81038 0.80693 0.85850 1.90748 1.30637 1.46505 1.78474 1.21663 1.00620 1.02688 0.90962 1.19819 0.97958 1.01008 0.87904 1.22284 1.03605 0.87004 0.99617 1.23945 1.05755 1.01950 0.89361 1.75093 1.14904 0.98874 1.28021 1.78258 1.16877 1.21481 0.92401 1.45189 1.40586 1.12957 1.10981 0.68925 1.21676 0.97099 0.96956 0.83974 1.22353 0.95407 0.99076 0.94546 0.89936 1.20724 0.96927 0.88466 0.89793 1.42554 1.83709 1.07339 1.05149 1.19618 1.37901 0.94796 0.85381 0.90498 1.25598 1.03298 0.95487 1.02486 1.69823 1.56224 0.99728 1.36219 0.85131 0.77785 0.76679 0.80109 1.21463 1.19230 1.22216 0.91811 0.93274 0.89059 0.93014 0.90862 0.86446 0.89254 0.85826 0.86179 0.89203 0.87983 0.77055 0.92750 0.93206 0.95634 0.95805 0.79455 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.70 6.49 71.98 0.47 1.17 16 3 O -0.39 -8.40 10.16 -148.98 -1.51 -9.92 16 4 C 0.09 1.95 3.00 32.06 0.10 2.04 16 5 H 0.09 1.73 7.74 -2.39 -0.02 1.71 16 6 C 0.09 1.35 6.44 86.93 0.56 1.91 16 7 N -0.61 -13.88 3.33 -811.36 -2.70 -16.58 16 8 C 0.52 11.38 7.85 87.66 0.69 12.07 16 9 O -0.58 -18.50 16.31 -3.03 -0.05 -18.55 16 10 C -0.12 -1.19 4.69 29.85 0.14 -1.05 16 11 C -0.03 -0.28 5.07 29.85 0.15 -0.12 16 12 C 0.01 0.11 6.56 41.35 0.27 0.38 16 13 C -0.05 -0.74 11.99 83.73 1.00 0.27 16 14 N -0.30 -6.27 12.41 -58.26 -0.72 -7.00 16 15 N -0.11 -2.07 13.38 37.02 0.50 -1.58 16 16 N -0.37 -4.14 6.98 -47.79 -0.33 -4.47 16 17 H 0.46 1.81 8.96 -219.96 -1.97 -0.17 16 18 C 0.13 3.98 6.27 86.73 0.54 4.52 16 19 C -0.09 -2.87 2.71 -9.61 -0.03 -2.90 16 20 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 21 C 0.17 6.47 5.59 86.38 0.48 6.95 16 22 N -0.74 -37.78 5.48 -343.47 -1.88 -39.67 16 23 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 24 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 25 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 26 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 27 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 29 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 30 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.12 0.90 7.48 -2.38 -0.02 0.89 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.12 0.60 7.85 -2.38 -0.02 0.58 16 40 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 41 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 42 H 0.21 1.80 8.06 -2.91 -0.02 1.78 16 43 H 0.05 1.97 7.73 -2.39 -0.02 1.95 16 44 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 47 H 0.37 20.33 7.60 -92.71 -0.70 19.63 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -80.57 401.55 0.33 -80.23 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -1.70 Total: 21.83 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 6.42 Total: 7.08 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -4.86 Total: -129.04 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -1.56 Total: -28.46 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -80.57 0.33 -80.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691766280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.876 kcal (2) G-P(sol) polarization free energy of solvation -80.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds