Wall clock time and date at job start Tue Mar 31 2020 21:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 120.00578 * 2 1 4 4 H 1.08001 * 120.00293 * 176.62554 * 3 2 1 5 5 C 1.38813 * 119.99837 * 356.62024 * 3 2 1 6 6 N 1.31620 * 120.00265 * 216.05869 * 5 3 2 7 7 Si 1.86803 * 119.99935 * 36.05693 * 5 3 2 8 8 H 1.48500 * 109.47435 * 265.28035 * 7 5 3 9 9 H 1.48507 * 109.46907 * 25.27771 * 7 5 3 10 10 H 1.48500 * 109.47039 * 145.27554 * 7 5 3 11 11 C 1.46501 * 119.99613 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47551 * 275.27057 * 11 2 1 13 13 H 1.08998 * 109.58292 * 59.57827 * 12 11 2 14 14 C 1.53189 * 109.58695 * 299.29874 * 12 11 2 15 15 C 1.53065 * 109.29684 * 185.71596 * 14 12 11 16 16 C 1.53043 * 109.65978 * 61.15478 * 15 14 12 17 17 C 1.53193 * 109.31064 * 298.69907 * 16 15 14 18 18 N 1.46922 * 109.58975 * 179.86584 * 12 11 2 19 19 C 1.34778 * 120.63066 * 353.41634 * 18 12 11 20 20 O 1.21281 * 119.99681 * 6.05429 * 19 18 12 21 21 C 1.50697 * 120.00192 * 186.06076 * 19 18 12 22 22 N 1.46502 * 109.47284 * 179.97438 * 21 19 18 23 23 N 1.40164 * 126.35051 * 269.68477 * 22 21 19 24 24 C 1.29403 * 108.13911 * 179.81541 * 23 22 21 25 25 N 1.37354 * 108.83039 * 0.44886 * 24 23 22 26 26 C 1.46491 * 125.83510 * 179.67768 * 25 24 23 27 27 C 1.34815 * 108.33537 * 359.71201 * 25 24 23 28 28 O 1.21811 * 126.30610 * 179.97438 * 27 25 24 29 29 H 1.08999 * 109.46404 * 35.31592 * 1 2 3 30 30 H 1.08995 * 109.47421 * 155.31082 * 1 2 3 31 31 H 1.09000 * 109.46825 * 275.31972 * 1 2 3 32 32 H 0.96999 * 119.99479 * 5.00754 * 6 5 3 33 33 H 1.09005 * 109.47258 * 35.27018 * 11 2 1 34 34 H 1.09002 * 109.47258 * 155.26868 * 11 2 1 35 35 H 1.09000 * 109.49990 * 305.52970 * 14 12 11 36 36 H 1.09008 * 109.49762 * 65.62364 * 14 12 11 37 37 H 1.09002 * 109.35090 * 301.12532 * 15 14 12 38 38 H 1.09007 * 109.44355 * 181.23560 * 15 14 12 39 39 H 1.09001 * 109.50060 * 178.74849 * 16 15 14 40 40 H 1.09001 * 109.52418 * 58.66492 * 16 15 14 41 41 H 1.08995 * 109.58840 * 294.84911 * 17 16 15 42 42 H 1.08993 * 109.70341 * 174.48795 * 17 16 15 43 43 H 1.09002 * 109.46855 * 300.00318 * 21 19 18 44 44 H 1.08997 * 109.47319 * 59.99416 * 21 19 18 45 45 H 1.08004 * 125.58594 * 180.13972 * 24 23 22 46 46 H 1.09005 * 109.47083 * 270.04348 * 26 25 24 47 47 H 1.09000 * 109.47593 * 30.04122 * 26 25 24 48 48 H 1.09000 * 109.47803 * 150.04146 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.2284 1.1866 0.0551 5 6 1.4577 2.3870 -0.0709 6 7 1.9611 3.3978 -0.7471 7 14 -0.1884 2.5689 0.7934 8 1 -1.2854 2.2815 -0.1653 9 1 -0.2598 1.6135 1.9282 10 1 -0.3284 3.9560 1.3047 11 6 2.1975 -1.2688 0.0006 12 6 2.3377 -1.7762 1.4371 13 1 1.3486 -1.9215 1.8715 14 6 3.1186 -0.7539 2.2689 15 6 3.3788 -1.3291 3.6633 16 6 4.2182 -2.6034 3.5461 17 6 3.4466 -3.6451 2.7298 18 7 3.0692 -3.0503 1.4403 19 6 3.3883 -3.6619 0.2824 20 8 3.1700 -3.1097 -0.7751 21 6 4.0162 -5.0317 0.3018 22 7 4.2644 -5.4746 -1.0724 23 7 3.3820 -6.2017 -1.8831 24 6 3.9553 -6.3994 -3.0263 25 7 5.2056 -5.8314 -2.9994 26 6 6.1761 -5.8416 -4.0967 27 6 5.3874 -5.2633 -1.7903 28 8 6.3823 -4.6692 -1.4149 29 1 -0.3632 0.8386 -0.5941 30 1 -0.3634 -0.9337 -0.4292 31 1 -0.3633 0.0953 1.0233 32 1 2.7789 3.2817 -1.2556 33 1 1.6525 -2.0032 -0.5925 34 1 3.1875 -1.1170 -0.4294 35 1 4.0702 -0.5397 1.7824 36 1 2.5384 0.1650 2.3544 37 1 2.4273 -1.5636 4.1405 38 1 3.9153 -0.5949 4.2644 39 1 4.4207 -2.9986 4.5416 40 1 5.1599 -2.3748 3.0470 41 1 2.5489 -3.9423 3.2718 42 1 4.0763 -4.5182 2.5591 43 1 4.9592 -4.9913 0.8470 44 1 3.3423 -5.7334 0.7932 45 1 3.5236 -6.9291 -3.8626 46 1 6.8088 -6.7254 -4.0138 47 1 5.6471 -5.8616 -5.0495 48 1 6.7945 -4.9457 -4.0433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691787960.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:18 Heat of formation + Delta-G solvation = 73.059625 kcal Electronic energy + Delta-G solvation = -31075.248257 eV Core-core repulsion = 26976.943899 eV Total energy + Delta-G solvation = -4098.304358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.52733 -40.30136 -37.36387 -37.27398 -35.79044 -35.30472 -32.89345 -32.29102 -31.63712 -30.61491 -28.55004 -27.26593 -26.66460 -25.44330 -24.44850 -23.09781 -22.37679 -21.55827 -20.64065 -20.31147 -19.01127 -17.74681 -17.28223 -17.12809 -16.31574 -16.27867 -15.98428 -15.53408 -15.19892 -14.74663 -14.69192 -14.38784 -14.17655 -13.98662 -13.60626 -13.42995 -13.30274 -13.07050 -13.01018 -12.94569 -12.59190 -12.48578 -12.22451 -12.00857 -11.92896 -11.54374 -11.21355 -11.04164 -10.79104 -10.50084 -10.42907 -10.37291 -10.31321 -10.18342 -9.88613 -9.65136 -9.24205 -9.01377 -8.58822 -8.27967 -8.14491 -6.95251 -6.25583 -2.97895 1.52728 1.82525 2.57697 2.70313 2.90941 3.20179 3.51355 3.61208 3.77033 4.22953 4.44036 4.53800 4.70721 4.73412 4.75819 4.90946 4.93702 4.94479 5.08812 5.18754 5.22568 5.23751 5.36431 5.45097 5.50729 5.53046 5.66231 5.81421 5.89083 5.92011 5.96481 6.12083 6.13357 6.31914 6.34231 6.41804 6.44125 6.63739 6.70120 6.76422 6.88829 7.01703 7.27610 7.46531 7.56182 7.93370 8.05363 8.35167 8.52719 9.19726 9.81784 10.31647 11.20575 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.003631 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.380358 B = 7709.031831 C = 8832.934091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.608 5.608 3 C -0.349 4.349 4 H 0.075 0.925 5 C -0.017 4.017 6 N -0.905 5.905 7 Si 1.051 2.949 8 H -0.301 1.301 9 H -0.289 1.289 10 H -0.307 1.307 11 C 0.171 3.829 12 C 0.122 3.878 13 H 0.062 0.938 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.134 4.134 17 C 0.106 3.894 18 N -0.603 5.603 19 C 0.492 3.508 20 O -0.508 6.508 21 C 0.143 3.857 22 N -0.436 5.436 23 N -0.273 5.273 24 C 0.255 3.745 25 N -0.562 5.562 26 C 0.100 3.900 27 C 0.652 3.348 28 O -0.552 6.552 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.231 0.769 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -25.172 1.649 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.333 5.333 3 C -0.477 4.477 4 H 0.093 0.907 5 C -0.218 4.218 6 N -0.544 5.544 7 Si 0.884 3.116 8 H -0.230 1.230 9 H -0.216 1.216 10 H -0.236 1.236 11 C 0.044 3.956 12 C 0.017 3.983 13 H 0.080 0.920 14 C -0.157 4.157 15 C -0.159 4.159 16 C -0.172 4.172 17 C -0.018 4.018 18 N -0.339 5.339 19 C 0.278 3.722 20 O -0.382 6.382 21 C 0.018 3.982 22 N -0.256 5.256 23 N -0.094 5.094 24 C -0.045 4.045 25 N -0.291 5.291 26 C -0.042 4.042 27 C 0.352 3.648 28 O -0.424 6.424 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.247 0.753 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.738 -23.480 2.294 23.886 hybrid contribution 1.711 -0.990 -0.529 2.047 sum 5.449 -24.470 1.765 25.131 Atomic orbital electron populations 1.21434 0.85542 1.00099 0.98579 1.44570 1.00345 1.02659 1.85680 1.20162 0.92110 0.84113 1.51286 0.90698 1.25666 1.03661 0.92658 0.99837 1.70863 1.21557 1.35608 1.26372 0.84255 0.76730 0.73761 0.76854 1.23015 1.21556 1.23578 1.21391 0.97595 0.86277 0.90339 1.22532 0.93021 0.80596 1.02139 0.91978 1.21875 1.01111 0.99344 0.93386 1.21575 0.99478 0.96452 0.98376 1.21906 0.99335 0.96330 0.99629 1.21751 0.99325 0.95878 0.84810 1.48354 1.56915 1.23765 1.04864 1.20771 0.79610 0.87386 0.84478 1.90834 1.52065 1.64548 1.30768 1.21323 1.03681 0.95034 0.78178 1.48198 1.12956 1.51101 1.13365 1.76963 1.16692 1.14237 1.01500 1.25887 0.83453 0.97163 0.97975 1.45839 1.16492 1.51700 1.15055 1.21810 0.91396 1.04185 0.86810 1.16641 0.84685 0.81891 0.81596 1.91089 1.30597 1.46752 1.74012 0.92678 0.94556 0.96793 0.92622 0.92326 0.91841 0.92270 0.88758 0.92257 0.91989 0.91095 0.91501 0.91190 0.90531 0.86250 0.86095 0.75323 0.90957 0.89296 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.10 8.48 59.85 0.51 2.60 16 2 N -0.61 -15.67 2.64 -181.11 -0.48 -16.14 16 3 C -0.35 -10.16 8.38 -15.06 -0.13 -10.28 16 4 H 0.08 2.33 8.04 -52.49 -0.42 1.91 16 5 C -0.02 -0.50 5.22 -17.43 -0.09 -0.60 16 6 N -0.91 -28.93 13.70 55.49 0.76 -28.17 16 7 Si 1.05 27.13 24.52 -169.99 -4.17 22.96 16 8 H -0.30 -7.49 6.49 56.52 0.37 -7.13 16 9 H -0.29 -6.99 6.06 56.52 0.34 -6.65 16 10 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 11 C 0.17 3.92 3.62 -4.04 -0.01 3.91 16 12 C 0.12 2.26 3.19 -67.60 -0.22 2.04 16 13 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.12 -2.20 4.69 -26.60 -0.12 -2.32 16 15 C -0.12 -1.66 5.88 -26.68 -0.16 -1.82 16 16 C -0.13 -1.47 6.09 -26.61 -0.16 -1.63 16 17 C 0.11 1.10 6.32 -3.71 -0.02 1.08 16 18 N -0.60 -9.10 2.97 -165.23 -0.49 -9.59 16 19 C 0.49 8.05 7.67 -10.99 -0.08 7.96 16 20 O -0.51 -10.66 11.84 5.56 0.07 -10.59 16 21 C 0.14 1.76 5.29 -5.19 -0.03 1.73 16 22 N -0.44 -6.15 3.11 -66.31 -0.21 -6.35 16 23 N -0.27 -3.34 12.53 29.87 0.37 -2.96 16 24 C 0.25 2.19 12.66 -89.12 -1.13 1.07 16 25 N -0.56 -5.99 3.14 -130.11 -0.41 -6.40 16 26 C 0.10 0.65 11.05 59.84 0.66 1.31 16 27 C 0.65 9.94 8.60 -86.73 -0.75 9.20 16 28 O -0.55 -10.26 17.71 5.09 0.09 -10.17 16 29 H 0.06 1.40 4.46 -51.93 -0.23 1.17 16 30 H 0.04 0.76 7.89 -51.93 -0.41 0.35 16 31 H 0.01 0.33 5.81 -51.93 -0.30 0.03 16 32 H 0.26 8.44 8.73 -40.82 -0.36 8.08 16 33 H 0.06 1.38 6.26 -51.93 -0.33 1.06 16 34 H 0.06 1.65 6.87 -51.93 -0.36 1.29 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 2.05 6.98 -51.92 -0.36 1.68 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 43 H 0.12 1.27 7.41 -51.93 -0.38 0.88 16 44 H 0.12 1.08 8.13 -51.93 -0.42 0.65 16 45 H 0.23 0.63 8.06 -52.48 -0.42 0.21 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -40.32 374.93 -7.96 -48.28 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.42 Total: -0.76 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: -1.73 Total: 14.24 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -0.45 Total: -69.62 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.16 Total: -20.76 kcal Atomic # 14 Polarization: 27.13 SS G_CDS: -4.17 Total: 22.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.32 -7.96 -48.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691787960.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.343 kcal (2) G-P(sol) polarization free energy of solvation -40.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds