Wall clock time and date at job start Tue Mar 31 2020 21:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 120.00578 * 2 1 4 4 H 1.08001 * 120.00293 * 176.62554 * 3 2 1 5 5 C 1.38813 * 119.99837 * 356.62024 * 3 2 1 6 6 N 1.31620 * 120.00265 * 216.05869 * 5 3 2 7 7 Si 1.86803 * 119.99935 * 36.05693 * 5 3 2 8 8 H 1.48500 * 109.47435 * 265.28035 * 7 5 3 9 9 H 1.48507 * 109.46907 * 25.27771 * 7 5 3 10 10 H 1.48500 * 109.47039 * 145.27554 * 7 5 3 11 11 C 1.46501 * 119.99613 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47551 * 275.27057 * 11 2 1 13 13 H 1.08998 * 109.58292 * 59.57827 * 12 11 2 14 14 C 1.53189 * 109.58695 * 299.29874 * 12 11 2 15 15 C 1.53065 * 109.29684 * 185.71596 * 14 12 11 16 16 C 1.53043 * 109.65978 * 61.15478 * 15 14 12 17 17 C 1.53193 * 109.31064 * 298.69907 * 16 15 14 18 18 N 1.46922 * 109.58975 * 179.86584 * 12 11 2 19 19 C 1.34778 * 120.63066 * 353.41634 * 18 12 11 20 20 O 1.21281 * 119.99681 * 6.05429 * 19 18 12 21 21 C 1.50697 * 120.00192 * 186.06076 * 19 18 12 22 22 N 1.46502 * 109.47284 * 179.97438 * 21 19 18 23 23 N 1.40164 * 126.35051 * 269.68477 * 22 21 19 24 24 C 1.29403 * 108.13911 * 179.81541 * 23 22 21 25 25 N 1.37354 * 108.83039 * 0.44886 * 24 23 22 26 26 C 1.46491 * 125.83510 * 179.67768 * 25 24 23 27 27 C 1.34815 * 108.33537 * 359.71201 * 25 24 23 28 28 O 1.21811 * 126.30610 * 179.97438 * 27 25 24 29 29 H 1.08999 * 109.46404 * 35.31592 * 1 2 3 30 30 H 1.08995 * 109.47421 * 155.31082 * 1 2 3 31 31 H 1.09000 * 109.46825 * 275.31972 * 1 2 3 32 32 H 0.96999 * 119.99479 * 5.00754 * 6 5 3 33 33 H 1.09005 * 109.47258 * 35.27018 * 11 2 1 34 34 H 1.09002 * 109.47258 * 155.26868 * 11 2 1 35 35 H 1.09000 * 109.49990 * 305.52970 * 14 12 11 36 36 H 1.09008 * 109.49762 * 65.62364 * 14 12 11 37 37 H 1.09002 * 109.35090 * 301.12532 * 15 14 12 38 38 H 1.09007 * 109.44355 * 181.23560 * 15 14 12 39 39 H 1.09001 * 109.50060 * 178.74849 * 16 15 14 40 40 H 1.09001 * 109.52418 * 58.66492 * 16 15 14 41 41 H 1.08995 * 109.58840 * 294.84911 * 17 16 15 42 42 H 1.08993 * 109.70341 * 174.48795 * 17 16 15 43 43 H 1.09002 * 109.46855 * 300.00318 * 21 19 18 44 44 H 1.08997 * 109.47319 * 59.99416 * 21 19 18 45 45 H 1.08004 * 125.58594 * 180.13972 * 24 23 22 46 46 H 1.09005 * 109.47083 * 270.04348 * 26 25 24 47 47 H 1.09000 * 109.47593 * 30.04122 * 26 25 24 48 48 H 1.09000 * 109.47803 * 150.04146 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.2284 1.1866 0.0551 5 6 1.4577 2.3870 -0.0709 6 7 1.9611 3.3978 -0.7471 7 14 -0.1884 2.5689 0.7934 8 1 -1.2854 2.2815 -0.1653 9 1 -0.2598 1.6135 1.9282 10 1 -0.3284 3.9560 1.3047 11 6 2.1975 -1.2688 0.0006 12 6 2.3377 -1.7762 1.4371 13 1 1.3486 -1.9215 1.8715 14 6 3.1186 -0.7539 2.2689 15 6 3.3788 -1.3291 3.6633 16 6 4.2182 -2.6034 3.5461 17 6 3.4466 -3.6451 2.7298 18 7 3.0692 -3.0503 1.4403 19 6 3.3883 -3.6619 0.2824 20 8 3.1700 -3.1097 -0.7751 21 6 4.0162 -5.0317 0.3018 22 7 4.2644 -5.4746 -1.0724 23 7 3.3820 -6.2017 -1.8831 24 6 3.9553 -6.3994 -3.0263 25 7 5.2056 -5.8314 -2.9994 26 6 6.1761 -5.8416 -4.0967 27 6 5.3874 -5.2633 -1.7903 28 8 6.3823 -4.6692 -1.4149 29 1 -0.3632 0.8386 -0.5941 30 1 -0.3634 -0.9337 -0.4292 31 1 -0.3633 0.0953 1.0233 32 1 2.7789 3.2817 -1.2556 33 1 1.6525 -2.0032 -0.5925 34 1 3.1875 -1.1170 -0.4294 35 1 4.0702 -0.5397 1.7824 36 1 2.5384 0.1650 2.3544 37 1 2.4273 -1.5636 4.1405 38 1 3.9153 -0.5949 4.2644 39 1 4.4207 -2.9986 4.5416 40 1 5.1599 -2.3748 3.0470 41 1 2.5489 -3.9423 3.2718 42 1 4.0763 -4.5182 2.5591 43 1 4.9592 -4.9913 0.8470 44 1 3.3423 -5.7334 0.7932 45 1 3.5236 -6.9291 -3.8626 46 1 6.8088 -6.7254 -4.0138 47 1 5.6471 -5.8616 -5.0495 48 1 6.7945 -4.9457 -4.0433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691787960.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:17 Heat of formation + Delta-G solvation = 43.445723 kcal Electronic energy + Delta-G solvation = -31076.532412 eV Core-core repulsion = 26976.943899 eV Total energy + Delta-G solvation = -4099.588514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.43806 -41.60625 -38.67875 -38.44802 -37.58791 -36.27366 -34.24867 -33.94058 -32.91932 -32.14678 -29.51465 -28.54477 -27.88989 -27.36116 -25.70497 -24.29255 -23.62898 -22.62277 -22.04905 -21.79833 -20.26116 -19.44962 -18.66522 -18.29402 -17.41753 -17.28395 -17.21736 -16.78059 -16.64578 -16.24884 -15.99832 -15.69594 -15.46748 -15.29372 -15.14728 -14.77111 -14.52249 -14.34064 -14.21208 -14.13800 -13.59526 -13.51791 -13.46478 -13.44200 -13.27627 -13.15499 -12.94220 -12.50306 -12.09766 -12.02602 -11.94141 -11.73182 -11.66998 -11.51445 -11.45761 -11.30994 -11.12508 -10.60729 -10.29693 -9.65617 -9.58057 -9.09577 -8.66266 -5.31269 0.63934 1.07319 1.42044 1.47781 1.52739 1.55242 1.72684 1.93419 2.26826 2.57577 2.96728 3.33227 3.42946 3.52660 3.81046 3.86437 3.96900 4.03681 4.06554 4.06858 4.10698 4.28567 4.35224 4.38919 4.44270 4.49402 4.55977 4.62367 4.71804 4.75315 4.76593 4.84759 4.85322 4.92424 4.96989 4.97837 5.07400 5.11747 5.26625 5.29285 5.45092 5.60829 5.66445 5.72523 6.15227 6.37213 6.58503 6.88929 6.90300 7.09023 7.62859 8.05900 8.80107 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.003631 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.380358 B = 7709.031831 C = 8832.934091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.625 5.625 3 C -0.334 4.334 4 H 0.032 0.968 5 C -0.075 4.075 6 N -0.941 5.941 7 Si 1.102 2.898 8 H -0.281 1.281 9 H -0.259 1.259 10 H -0.313 1.313 11 C 0.186 3.814 12 C 0.134 3.866 13 H 0.077 0.923 14 C -0.112 4.112 15 C -0.115 4.115 16 C -0.130 4.130 17 C 0.099 3.901 18 N -0.601 5.601 19 C 0.483 3.517 20 O -0.567 6.567 21 C 0.148 3.852 22 N -0.445 5.445 23 N -0.307 5.307 24 C 0.277 3.723 25 N -0.560 5.560 26 C 0.092 3.908 27 C 0.629 3.371 28 O -0.602 6.602 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.246 0.754 33 H 0.054 0.946 34 H 0.016 0.984 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.048 0.952 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.136 0.864 44 H 0.163 0.837 45 H 0.289 0.711 46 H 0.095 0.905 47 H 0.128 0.872 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.158 -29.377 3.327 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.351 5.351 3 C -0.463 4.463 4 H 0.050 0.950 5 C -0.269 4.269 6 N -0.583 5.583 7 Si 0.929 3.071 8 H -0.208 1.208 9 H -0.184 1.184 10 H -0.242 1.242 11 C 0.060 3.940 12 C 0.029 3.971 13 H 0.095 0.905 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.168 4.168 17 C -0.022 4.022 18 N -0.335 5.335 19 C 0.271 3.729 20 O -0.445 6.445 21 C 0.023 3.977 22 N -0.263 5.263 23 N -0.128 5.128 24 C -0.021 4.021 25 N -0.288 5.288 26 C -0.048 4.048 27 C 0.328 3.672 28 O -0.480 6.480 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.067 0.933 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.153 0.847 44 H 0.181 0.819 45 H 0.304 0.696 46 H 0.113 0.887 47 H 0.147 0.853 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.743 -27.789 3.991 28.128 hybrid contribution 2.463 0.222 -1.192 2.745 sum 4.206 -27.567 2.799 28.026 Atomic orbital electron populations 1.21537 0.83643 1.00990 0.99509 1.44614 1.01673 1.02311 1.86487 1.19899 0.90448 0.86006 1.49909 0.94971 1.27044 1.07457 0.92369 1.00063 1.71002 1.21797 1.36784 1.28735 0.83553 0.72765 0.74009 0.76731 1.20831 1.18408 1.24214 1.21146 0.94634 0.85041 0.93191 1.21951 0.94310 0.82479 0.98393 0.90486 1.21714 0.98422 0.98334 0.96624 1.21546 1.01202 0.97850 0.94649 1.21919 0.97878 0.95086 1.01882 1.22206 1.01318 0.96455 0.82246 1.48380 1.56066 1.22276 1.06825 1.21627 0.78752 0.88756 0.83786 1.90803 1.54621 1.66223 1.32886 1.21500 1.04889 0.92878 0.78450 1.48401 1.12900 1.50966 1.14053 1.76970 1.17113 1.15858 1.02902 1.27112 0.81875 0.94844 0.98242 1.46117 1.17775 1.50573 1.14294 1.22152 0.91455 1.04053 0.87139 1.17102 0.84668 0.82276 0.83142 1.91027 1.32485 1.49084 1.75389 0.94252 0.91737 0.94830 0.94587 0.92754 0.96584 0.96043 0.92523 0.90266 0.91722 0.86893 0.93343 0.88155 0.86844 0.84673 0.81940 0.69553 0.88659 0.85344 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 4.02 8.48 127.77 1.08 5.10 16 2 N -0.63 -33.16 2.64 -726.92 -1.92 -35.08 16 3 C -0.33 -20.57 8.38 84.03 0.70 -19.87 16 4 H 0.03 2.20 8.04 -2.91 -0.02 2.18 16 5 C -0.07 -4.64 5.22 84.86 0.44 -4.20 16 6 N -0.94 -63.27 13.70 21.65 0.30 -62.97 16 7 Si 1.10 55.21 24.52 68.60 1.68 56.90 16 8 H -0.28 -13.13 6.49 99.48 0.65 -12.49 16 9 H -0.26 -11.62 6.06 99.48 0.60 -11.01 16 10 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 11 C 0.19 8.91 3.62 86.38 0.31 9.23 16 12 C 0.13 4.98 3.19 44.97 0.14 5.13 16 13 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 14 C -0.11 -4.29 4.69 30.68 0.14 -4.15 16 15 C -0.11 -2.95 5.88 30.63 0.18 -2.77 16 16 C -0.13 -2.44 6.09 30.67 0.19 -2.26 16 17 C 0.10 1.66 6.32 86.36 0.55 2.21 16 18 N -0.60 -17.38 2.97 -795.05 -2.36 -19.74 16 19 C 0.48 15.71 7.67 87.66 0.67 16.38 16 20 O -0.57 -24.88 11.84 -3.03 -0.04 -24.91 16 21 C 0.15 3.36 5.29 85.63 0.45 3.81 16 22 N -0.44 -12.16 3.11 -481.78 -1.50 -13.66 16 23 N -0.31 -6.90 12.53 -59.42 -0.74 -7.65 16 24 C 0.28 3.98 12.66 179.82 2.28 6.26 16 25 N -0.56 -11.21 3.14 -683.70 -2.15 -13.36 16 26 C 0.09 1.05 11.05 127.77 1.41 2.46 16 27 C 0.63 19.37 8.60 178.99 1.54 20.91 16 28 O -0.60 -23.51 17.71 -4.70 -0.08 -23.59 16 29 H 0.04 1.95 4.46 -2.39 -0.01 1.94 16 30 H 0.06 2.58 7.89 -2.39 -0.02 2.56 16 31 H 0.03 1.44 5.81 -2.39 -0.01 1.43 16 32 H 0.25 16.85 8.73 -92.71 -0.81 16.04 16 33 H 0.05 2.65 6.26 -2.38 -0.01 2.64 16 34 H 0.02 0.90 6.87 -2.39 -0.02 0.88 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 2.56 6.98 -2.38 -0.02 2.55 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.11 1.14 5.96 -2.39 -0.01 1.13 16 43 H 0.14 2.61 7.41 -2.39 -0.02 2.59 16 44 H 0.16 2.26 8.13 -2.39 -0.02 2.24 16 45 H 0.29 0.10 8.06 -2.91 -0.02 0.08 16 46 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 Total: -1.00 -99.76 374.93 4.04 -95.72 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.76 Total: 10.11 kcal Atomic # 6 Polarization: 28.15 SS G_CDS: 10.10 Total: 38.24 kcal Atomic # 7 Polarization: -144.08 SS G_CDS: -8.38 Total: -152.46 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.12 Total: -48.51 kcal Atomic # 14 Polarization: 55.21 SS G_CDS: 1.68 Total: 56.90 kcal Total: -99.76 4.04 -95.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691787960.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.161 kcal (2) G-P(sol) polarization free energy of solvation -99.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds