Wall clock time and date at job start Tue Mar 31 2020 20:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47426 * 2 1 4 4 C 1.46898 * 111.00387 * 293.95457 * 3 2 1 5 5 C 1.46901 * 111.00085 * 169.99862 * 3 2 1 6 6 C 1.53001 * 109.47242 * 190.00306 * 5 3 2 7 7 C 1.50697 * 109.47382 * 180.02562 * 6 5 3 8 8 O 1.21280 * 119.99937 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00199 * 180.02562 * 7 6 5 10 10 C 1.46490 * 119.99973 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47167 * 179.97438 * 10 9 7 12 12 N 1.31789 * 119.09648 * 269.98067 * 11 10 9 13 13 C 1.32799 * 120.71637 * 179.97438 * 12 11 10 14 14 O 1.35519 * 120.50861 * 179.97438 * 13 12 11 15 15 C 1.39416 * 118.97466 * 359.74609 * 13 12 11 16 16 C 1.38181 * 118.35119 * 0.51526 * 15 13 12 17 17 C 1.50697 * 120.41367 * 179.76229 * 16 15 13 18 18 N 1.46499 * 109.47276 * 94.71971 * 17 16 15 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46676 * 90.00727 * 23 21 19 25 25 H 1.48502 * 109.46977 * 210.00025 * 23 21 19 26 26 H 1.48494 * 109.47494 * 330.00753 * 23 21 19 27 27 N 1.31763 * 119.09108 * 90.00041 * 11 10 9 28 28 H 1.08999 * 109.47104 * 59.99736 * 1 2 3 29 29 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46548 * 299.99861 * 1 2 3 31 31 H 1.09008 * 109.46972 * 240.00054 * 2 1 3 32 32 H 1.09005 * 109.47519 * 120.00264 * 2 1 3 33 33 H 1.08995 * 109.46993 * 296.04588 * 4 3 2 34 34 H 1.09006 * 109.46715 * 56.04429 * 4 3 2 35 35 H 1.08996 * 109.47766 * 176.04077 * 4 3 2 36 36 H 1.09001 * 109.46861 * 70.00689 * 5 3 2 37 37 H 1.08999 * 109.47479 * 310.00086 * 5 3 2 38 38 H 1.09003 * 109.47235 * 59.99715 * 6 5 3 39 39 H 1.09006 * 109.47061 * 300.00162 * 6 5 3 40 40 H 0.96998 * 119.99587 * 359.97438 * 9 7 6 41 41 H 1.09004 * 109.47512 * 60.00127 * 10 9 7 42 42 H 1.08994 * 109.47511 * 300.00073 * 10 9 7 43 43 H 0.96702 * 114.00026 * 90.00217 * 14 13 12 44 44 H 1.08004 * 120.81960 * 180.27450 * 15 13 12 45 45 H 1.09004 * 109.47205 * 334.71946 * 17 16 15 46 46 H 1.09005 * 109.47240 * 214.72155 * 17 16 15 47 47 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 48 48 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 -1.2533 5 6 3.4685 1.4310 0.2382 6 6 3.9000 2.8790 0.4792 7 6 5.3864 2.9264 0.7229 8 8 6.0366 1.9027 0.7060 9 7 5.9931 4.1062 0.9607 10 6 7.4379 4.1521 1.1982 11 6 7.8629 5.5784 1.4355 12 7 8.2253 6.3186 0.4071 13 6 8.6051 7.5794 0.5793 14 8 8.9775 8.3367 -0.4811 15 6 8.6102 8.1134 1.8671 16 6 8.2279 7.2996 2.9164 17 6 8.2214 7.8273 4.3279 18 7 6.8782 8.3058 4.6642 19 6 6.6296 8.8334 5.9032 20 1 7.4226 8.8928 6.6339 21 6 5.3569 9.2872 6.2217 22 7 4.3892 9.2100 5.3330 23 14 5.0176 10.0063 7.9120 24 1 5.2631 11.4707 7.8852 25 1 3.6036 9.7482 8.2850 26 1 5.9164 9.3719 8.9094 27 7 7.8622 6.0508 2.6655 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.1770 1.5791 -2.0859 34 1 0.5920 2.0179 -1.4051 35 1 1.9824 3.1098 -1.1987 36 1 3.9925 1.0359 -0.6321 37 1 3.7123 0.8288 1.1134 38 1 3.3759 3.2742 1.3495 39 1 3.6563 3.4812 -0.3961 40 1 5.4730 4.9248 0.9746 41 1 7.9620 3.7573 0.3278 42 1 7.6817 3.5497 2.0732 43 1 8.2495 8.8225 -0.8925 44 1 8.9094 9.1366 2.0407 45 1 8.9316 8.6500 4.4116 46 1 8.5059 7.0304 5.0151 47 1 6.1649 8.2488 4.0093 48 1 3.4998 9.5267 5.5557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691914355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:17 Heat of formation + Delta-G solvation = -9.156490 kcal Electronic energy + Delta-G solvation = -28192.027009 eV Core-core repulsion = 24090.157493 eV Total energy + Delta-G solvation = -4101.869517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27886 -39.84541 -38.01916 -37.76784 -35.69810 -34.63578 -33.15808 -32.67855 -31.79941 -30.68871 -29.78481 -27.77509 -26.62781 -26.58104 -23.57640 -23.39987 -22.61242 -21.51938 -21.10113 -20.37029 -18.87886 -17.88217 -17.49508 -17.27599 -16.29867 -16.25047 -15.95264 -15.62703 -15.37211 -15.33977 -14.87965 -14.53228 -14.17655 -14.06960 -13.89841 -13.61459 -13.34892 -13.26523 -13.01677 -12.68000 -12.67408 -12.41789 -12.17216 -12.12195 -12.04374 -11.93678 -11.59280 -11.15726 -11.09875 -11.08704 -10.89106 -10.67489 -10.42312 -10.17800 -10.06999 -9.84784 -9.43615 -9.22836 -9.21498 -9.01938 -8.63106 -7.09648 -5.87778 -3.18932 0.73749 0.97055 2.55437 2.85954 3.26204 3.38180 3.43729 3.45475 3.61648 3.76114 3.90087 4.31405 4.53773 4.60441 4.65729 4.82105 4.85393 4.90092 4.94708 5.09876 5.16205 5.21240 5.23276 5.27206 5.32199 5.34529 5.45309 5.51354 5.57745 5.63999 5.68128 5.72056 5.72570 5.76252 5.92259 5.95111 6.15574 6.21773 6.32645 6.43779 6.75407 6.76477 6.98779 7.25337 7.33907 7.59239 8.07162 8.08700 8.28070 9.40626 9.90731 10.26532 11.34600 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007686 B = 0.002601 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3642.310823 B =10763.810451 C =13478.174182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.072 3.928 6 C -0.138 4.138 7 C 0.521 3.479 8 O -0.544 6.544 9 N -0.719 5.719 10 C 0.197 3.803 11 C 0.315 3.685 12 N -0.533 5.533 13 C 0.353 3.647 14 O -0.477 6.477 15 C -0.217 4.217 16 C 0.200 3.800 17 C 0.196 3.804 18 N -0.721 5.721 19 C -0.245 4.245 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 N -0.491 5.491 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.405 0.595 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.407 0.593 44 H 0.156 0.844 45 H 0.045 0.955 46 H 0.049 0.951 47 H 0.385 0.615 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 -11.256 -15.294 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.269 5.269 4 C -0.132 4.132 5 C -0.056 4.056 6 C -0.178 4.178 7 C 0.308 3.692 8 O -0.422 6.422 9 N -0.372 5.372 10 C 0.072 3.928 11 C 0.046 3.954 12 N -0.259 5.259 13 C 0.166 3.834 14 O -0.284 6.284 15 C -0.241 4.241 16 C 0.055 3.945 17 C 0.068 3.932 18 N -0.367 5.367 19 C -0.375 4.375 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 N -0.207 5.207 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.239 0.761 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.266 0.734 44 H 0.174 0.826 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.218 0.782 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.728 -12.767 -14.805 19.563 hybrid contribution -0.420 1.698 -0.109 1.752 sum -1.148 -11.069 -14.914 18.609 Atomic orbital electron populations 1.21813 0.94785 1.01542 1.02585 1.22078 0.96120 0.88568 1.00941 1.61973 1.13868 1.16179 1.34915 1.22509 1.01577 0.99438 0.89658 1.21805 0.86502 0.95398 1.01922 1.21634 0.91779 0.99405 1.05001 1.20581 0.90057 0.82807 0.75764 1.90705 1.66882 1.33329 1.51235 1.45830 1.08306 1.10093 1.72993 1.19839 0.81434 0.88106 1.03463 1.22736 0.93035 0.96100 0.83532 1.67672 1.14138 1.06804 1.37269 1.19372 0.90032 0.87278 0.86700 1.84704 1.37223 1.61038 1.45470 1.22973 1.04500 1.03672 0.92964 1.22198 0.86971 0.87501 0.97818 1.19727 0.90966 0.96640 0.85868 1.42150 1.04869 1.74109 1.15536 1.19204 0.95030 1.32917 0.90372 0.90743 1.24769 0.95799 1.01720 0.98280 1.69661 1.01724 1.52321 1.34133 0.86130 0.77320 0.78852 0.83489 1.21596 1.21652 1.20586 1.68198 1.14877 1.15072 1.22584 0.92689 0.92327 0.91674 0.94935 0.90599 0.95639 0.91058 0.91087 0.93944 0.89793 0.87478 0.88802 0.76068 0.88862 0.88421 0.73382 0.82596 0.93758 0.93371 0.78159 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.84 37.16 0.37 -0.67 16 2 C 0.05 0.41 5.68 -3.83 -0.02 0.39 16 3 N -0.54 -5.02 4.76 -242.92 -1.16 -6.18 16 4 C 0.02 0.13 9.13 60.06 0.55 0.67 16 5 C 0.07 0.72 4.25 -3.82 -0.02 0.71 16 6 C -0.14 -1.33 5.62 -27.88 -0.16 -1.49 16 7 C 0.52 6.48 7.83 -10.98 -0.09 6.39 16 8 O -0.54 -8.45 15.98 5.56 0.09 -8.36 16 9 N -0.72 -8.76 5.55 -61.48 -0.34 -9.10 16 10 C 0.20 2.60 6.10 -5.20 -0.03 2.57 16 11 C 0.32 4.72 7.01 -157.23 -1.10 3.62 16 12 N -0.53 -7.83 10.36 -10.78 -0.11 -7.95 16 13 C 0.35 4.90 7.83 -16.70 -0.13 4.77 16 14 O -0.48 -5.35 13.58 -18.25 -0.25 -5.60 16 15 C -0.22 -3.16 9.79 -39.16 -0.38 -3.54 16 16 C 0.20 3.41 6.18 -82.32 -0.51 2.90 16 17 C 0.20 3.77 6.61 -5.20 -0.03 3.73 16 18 N -0.72 -17.50 5.59 -61.08 -0.34 -17.84 16 19 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 23 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 N -0.49 -8.37 10.27 -7.06 -0.07 -8.44 16 28 H 0.05 0.36 6.47 -51.93 -0.34 0.02 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.26 8.12 -51.92 -0.42 -0.17 16 32 H 0.08 0.61 7.93 -51.93 -0.41 0.20 16 33 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.50 6.30 -51.93 -0.33 0.17 16 35 H 0.07 0.52 6.47 -51.93 -0.34 0.18 16 36 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 37 H 0.08 0.92 7.89 -51.93 -0.41 0.51 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.09 0.75 6.55 -51.93 -0.34 0.41 16 40 H 0.41 4.60 8.46 -40.82 -0.35 4.25 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.41 2.53 9.06 45.56 0.41 2.94 16 44 H 0.16 2.00 8.06 -52.48 -0.42 1.57 16 45 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.38 9.97 7.66 -40.82 -0.31 9.66 16 48 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 403.65 15.07 6.08 6.08 Total: -1.00 -33.32 403.65 -8.80 -42.12 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.59 Total: 12.04 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -1.80 Total: 13.00 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.30 Total: -75.95 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.16 Total: -13.96 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.32 -8.80 -42.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691914355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.961 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds