Wall clock time and date at job start Tue Mar 31 2020 20:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47426 * 2 1 4 4 C 1.46898 * 111.00387 * 293.95457 * 3 2 1 5 5 C 1.46901 * 111.00085 * 169.99862 * 3 2 1 6 6 C 1.53001 * 109.47242 * 190.00306 * 5 3 2 7 7 C 1.50697 * 109.47382 * 180.02562 * 6 5 3 8 8 O 1.21280 * 119.99937 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00199 * 180.02562 * 7 6 5 10 10 C 1.46490 * 119.99973 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47167 * 179.97438 * 10 9 7 12 12 N 1.31789 * 119.09648 * 269.98067 * 11 10 9 13 13 C 1.32799 * 120.71637 * 179.97438 * 12 11 10 14 14 O 1.35519 * 120.50861 * 179.97438 * 13 12 11 15 15 C 1.39416 * 118.97466 * 359.74609 * 13 12 11 16 16 C 1.38181 * 118.35119 * 0.51526 * 15 13 12 17 17 C 1.50697 * 120.41367 * 179.76229 * 16 15 13 18 18 N 1.46499 * 109.47276 * 94.71971 * 17 16 15 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46676 * 90.00727 * 23 21 19 25 25 H 1.48502 * 109.46977 * 210.00025 * 23 21 19 26 26 H 1.48494 * 109.47494 * 330.00753 * 23 21 19 27 27 N 1.31763 * 119.09108 * 90.00041 * 11 10 9 28 28 H 1.08999 * 109.47104 * 59.99736 * 1 2 3 29 29 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46548 * 299.99861 * 1 2 3 31 31 H 1.09008 * 109.46972 * 240.00054 * 2 1 3 32 32 H 1.09005 * 109.47519 * 120.00264 * 2 1 3 33 33 H 1.08995 * 109.46993 * 296.04588 * 4 3 2 34 34 H 1.09006 * 109.46715 * 56.04429 * 4 3 2 35 35 H 1.08996 * 109.47766 * 176.04077 * 4 3 2 36 36 H 1.09001 * 109.46861 * 70.00689 * 5 3 2 37 37 H 1.08999 * 109.47479 * 310.00086 * 5 3 2 38 38 H 1.09003 * 109.47235 * 59.99715 * 6 5 3 39 39 H 1.09006 * 109.47061 * 300.00162 * 6 5 3 40 40 H 0.96998 * 119.99587 * 359.97438 * 9 7 6 41 41 H 1.09004 * 109.47512 * 60.00127 * 10 9 7 42 42 H 1.08994 * 109.47511 * 300.00073 * 10 9 7 43 43 H 0.96702 * 114.00026 * 90.00217 * 14 13 12 44 44 H 1.08004 * 120.81960 * 180.27450 * 15 13 12 45 45 H 1.09004 * 109.47205 * 334.71946 * 17 16 15 46 46 H 1.09005 * 109.47240 * 214.72155 * 17 16 15 47 47 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 48 48 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 -1.2533 5 6 3.4685 1.4310 0.2382 6 6 3.9000 2.8790 0.4792 7 6 5.3864 2.9264 0.7229 8 8 6.0366 1.9027 0.7060 9 7 5.9931 4.1062 0.9607 10 6 7.4379 4.1521 1.1982 11 6 7.8629 5.5784 1.4355 12 7 8.2253 6.3186 0.4071 13 6 8.6051 7.5794 0.5793 14 8 8.9775 8.3367 -0.4811 15 6 8.6102 8.1134 1.8671 16 6 8.2279 7.2996 2.9164 17 6 8.2214 7.8273 4.3279 18 7 6.8782 8.3058 4.6642 19 6 6.6296 8.8334 5.9032 20 1 7.4226 8.8928 6.6339 21 6 5.3569 9.2872 6.2217 22 7 4.3892 9.2100 5.3330 23 14 5.0176 10.0063 7.9120 24 1 5.2631 11.4707 7.8852 25 1 3.6036 9.7482 8.2850 26 1 5.9164 9.3719 8.9094 27 7 7.8622 6.0508 2.6655 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.1770 1.5791 -2.0859 34 1 0.5920 2.0179 -1.4051 35 1 1.9824 3.1098 -1.1987 36 1 3.9925 1.0359 -0.6321 37 1 3.7123 0.8288 1.1134 38 1 3.3759 3.2742 1.3495 39 1 3.6563 3.4812 -0.3961 40 1 5.4730 4.9248 0.9746 41 1 7.9620 3.7573 0.3278 42 1 7.6817 3.5497 2.0732 43 1 8.2495 8.8225 -0.8925 44 1 8.9094 9.1366 2.0407 45 1 8.9316 8.6500 4.4116 46 1 8.5059 7.0304 5.0151 47 1 6.1649 8.2488 4.0093 48 1 3.4998 9.5267 5.5557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691914355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:15 Heat of formation + Delta-G solvation = -38.275612 kcal Electronic energy + Delta-G solvation = -28193.289709 eV Core-core repulsion = 24090.157493 eV Total energy + Delta-G solvation = -4103.132217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.44860 -40.85857 -38.86577 -38.65979 -37.16314 -35.93855 -34.63684 -33.49262 -33.08111 -32.31213 -30.54100 -28.76654 -28.21072 -27.36591 -25.23465 -24.44263 -23.68170 -22.83774 -21.83930 -21.31115 -19.95293 -19.42930 -18.81433 -18.44896 -17.34565 -17.09911 -17.02338 -16.75140 -16.53026 -16.35385 -16.18553 -15.64393 -15.42265 -15.20601 -14.98599 -14.82196 -14.69889 -14.30539 -14.14110 -14.03016 -13.68668 -13.48259 -13.16220 -13.09880 -12.95242 -12.80848 -12.75689 -12.67999 -12.28322 -12.12230 -11.97241 -11.87172 -11.80238 -11.74773 -11.52069 -11.13430 -11.00276 -10.59863 -10.42932 -10.26579 -9.33521 -9.06971 -7.96105 -5.26815 -0.40965 -0.22097 1.50879 1.52128 1.55398 1.60478 1.84052 2.24392 2.48962 2.58912 2.71041 3.01598 3.12828 3.39079 3.72696 3.80105 3.88566 3.92210 4.07949 4.10617 4.14280 4.16242 4.24473 4.30997 4.46367 4.54382 4.55716 4.59065 4.62116 4.63202 4.79575 4.88987 4.89986 4.92945 5.00144 5.04041 5.10397 5.13853 5.20238 5.37790 5.50312 5.81059 6.04360 6.10436 6.23082 6.35759 6.46456 6.88550 7.09244 7.31259 7.97302 8.23393 9.26973 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007686 B = 0.002601 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3642.310823 B =10763.810451 C =13478.174182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 N -0.553 5.553 4 C 0.014 3.986 5 C 0.077 3.923 6 C -0.128 4.128 7 C 0.522 3.478 8 O -0.578 6.578 9 N -0.715 5.715 10 C 0.201 3.799 11 C 0.317 3.683 12 N -0.536 5.536 13 C 0.364 3.636 14 O -0.474 6.474 15 C -0.211 4.211 16 C 0.183 3.817 17 C 0.198 3.802 18 N -0.733 5.733 19 C -0.246 4.246 20 H 0.083 0.917 21 C -0.070 4.070 22 N -0.966 5.966 23 Si 0.975 3.025 24 H -0.284 1.284 25 H -0.297 1.297 26 H -0.270 1.270 27 N -0.515 5.515 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.410 0.590 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.431 0.569 44 H 0.175 0.825 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.373 0.627 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 -10.561 -16.091 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 N -0.278 5.278 4 C -0.133 4.133 5 C -0.051 4.051 6 C -0.168 4.168 7 C 0.310 3.690 8 O -0.457 6.457 9 N -0.367 5.367 10 C 0.075 3.925 11 C 0.048 3.952 12 N -0.262 5.262 13 C 0.176 3.824 14 O -0.285 6.285 15 C -0.235 4.235 16 C 0.039 3.961 17 C 0.071 3.929 18 N -0.376 5.376 19 C -0.377 4.377 20 H 0.101 0.899 21 C -0.262 4.262 22 N -0.616 5.616 23 Si 0.804 3.196 24 H -0.211 1.211 25 H -0.224 1.224 26 H -0.195 1.195 27 N -0.232 5.232 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.245 0.755 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.294 0.706 44 H 0.192 0.808 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.205 0.795 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.548 -12.048 -15.613 19.729 hybrid contribution -0.378 1.470 0.032 1.518 sum -0.926 -10.578 -15.581 18.855 Atomic orbital electron populations 1.21776 0.93729 1.02320 1.02381 1.22145 0.96964 0.88089 1.00861 1.62006 1.12991 1.16930 1.35890 1.22571 1.02208 0.99564 0.88990 1.21688 0.87215 0.95287 1.00937 1.21604 0.89554 0.99613 1.06059 1.21035 0.90989 0.82170 0.74811 1.90691 1.67814 1.34410 1.52814 1.45814 1.07957 1.10366 1.72584 1.19783 0.82130 0.87168 1.03394 1.22876 0.92751 0.96529 0.83027 1.67761 1.14236 1.07251 1.36938 1.19432 0.88614 0.87144 0.87207 1.84671 1.38431 1.60851 1.44549 1.23069 1.03738 1.04089 0.92585 1.21892 0.88792 0.88125 0.97301 1.19756 0.88835 0.96874 0.87424 1.42274 1.06513 1.74210 1.14602 1.19616 0.95172 1.31598 0.91359 0.89932 1.25560 0.95896 1.03064 1.01729 1.69808 1.01839 1.54049 1.35923 0.85128 0.76641 0.78174 0.79698 1.21119 1.22422 1.19471 1.68121 1.15810 1.15511 1.23792 0.92173 0.91118 0.92497 0.94716 0.91029 0.95500 0.90158 0.90513 0.94782 0.91223 0.87069 0.86633 0.75466 0.88230 0.89173 0.70591 0.80796 0.91751 0.94078 0.79494 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.84 71.98 0.71 -1.13 16 2 C 0.05 0.73 5.68 86.30 0.49 1.22 16 3 N -0.55 -9.78 4.76 -922.46 -4.39 -14.18 16 4 C 0.01 0.20 9.13 127.69 1.17 1.37 16 5 C 0.08 1.54 4.25 86.30 0.37 1.90 16 6 C -0.13 -2.38 5.62 29.85 0.17 -2.22 16 7 C 0.52 12.84 7.83 87.66 0.69 13.53 16 8 O -0.58 -18.12 15.98 -3.03 -0.05 -18.17 16 9 N -0.71 -17.08 5.55 -466.81 -2.59 -19.67 16 10 C 0.20 5.25 6.10 85.63 0.52 5.78 16 11 C 0.32 9.28 7.01 138.76 0.97 10.25 16 12 N -0.54 -14.89 10.36 -300.69 -3.12 -18.01 16 13 C 0.36 9.30 7.83 84.83 0.66 9.97 16 14 O -0.47 -9.22 13.58 -88.22 -1.20 -10.42 16 15 C -0.21 -5.76 9.79 22.54 0.22 -5.54 16 16 C 0.18 6.09 6.18 42.44 0.26 6.35 16 17 C 0.20 7.49 6.61 85.63 0.57 8.06 16 18 N -0.73 -35.45 5.59 -347.17 -1.94 -37.40 16 19 C -0.25 -13.09 9.99 84.04 0.84 -12.25 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 22 N -0.97 -56.94 13.06 21.65 0.28 -56.66 16 23 Si 0.97 44.49 29.55 68.60 2.03 46.51 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 N -0.52 -17.42 10.27 -176.24 -1.81 -19.23 16 28 H 0.06 0.70 6.47 -2.39 -0.02 0.68 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.03 0.52 8.12 -2.38 -0.02 0.50 16 32 H 0.07 1.16 7.93 -2.38 -0.02 1.14 16 33 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 0.99 6.30 -2.38 -0.02 0.97 16 35 H 0.08 0.98 6.47 -2.39 -0.02 0.96 16 36 H 0.03 0.73 8.08 -2.39 -0.02 0.71 16 37 H 0.07 1.57 7.89 -2.39 -0.02 1.55 16 38 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.12 1.65 6.55 -2.38 -0.02 1.64 16 40 H 0.41 9.02 8.46 -92.71 -0.78 8.24 16 41 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.43 3.94 9.06 -74.06 -0.67 3.26 16 44 H 0.17 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.06 2.20 8.06 -2.38 -0.02 2.18 16 46 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.37 19.53 7.66 -92.71 -0.71 18.82 16 48 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -70.64 403.65 -5.84 -76.48 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -1.16 Total: 36.82 kcal Atomic # 6 Polarization: 25.81 SS G_CDS: 8.10 Total: 33.91 kcal Atomic # 7 Polarization: -151.57 SS G_CDS: -13.57 Total: -165.13 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.25 Total: -28.59 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -70.64 -5.84 -76.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691914355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.206 kcal (2) G-P(sol) polarization free energy of solvation -70.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds