Wall clock time and date at job start Tue Mar 31 2020 20:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00015 * 2 1 4 4 C 1.52997 * 109.47228 * 270.00046 * 3 2 1 5 5 N 1.46901 * 109.47435 * 180.02562 * 4 3 2 6 6 C 1.46900 * 111.00280 * 169.99857 * 5 4 3 7 7 C 1.53236 * 109.33941 * 172.74318 * 6 5 4 8 8 N 1.47083 * 108.51687 * 53.83340 * 7 6 5 9 9 C 1.36937 * 120.88264 * 128.79110 * 8 7 6 10 10 H 1.07997 * 120.00372 * 207.53826 * 9 8 7 11 11 C 1.38816 * 119.99818 * 27.54027 * 9 8 7 12 12 N 1.31626 * 120.00186 * 7.28478 * 11 9 8 13 13 Si 1.86800 * 120.00247 * 187.28872 * 11 9 8 14 14 H 1.48502 * 109.47106 * 59.99361 * 13 11 9 15 15 H 1.48496 * 109.47279 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46889 * 299.99907 * 13 11 9 17 17 C 1.47084 * 118.24030 * 308.81126 * 8 7 6 18 18 C 1.46896 * 110.99583 * 45.69533 * 5 4 3 19 19 C 1.34778 * 119.99700 * 180.02562 * 2 1 3 20 20 O 1.21732 * 119.99738 * 185.74191 * 19 2 1 21 21 C 1.46372 * 120.00250 * 5.74403 * 19 2 1 22 22 C 1.36723 * 126.82930 * 8.28993 * 21 19 2 23 23 N 1.33224 * 107.96707 * 180.02562 * 22 21 19 24 24 C 1.31542 * 109.75795 * 359.97438 * 23 22 21 25 25 O 1.35206 * 125.48856 * 180.02562 * 24 23 22 26 26 N 1.34943 * 109.01305 * 359.72795 * 24 23 22 27 27 C 1.46506 * 126.53899 * 180.27450 * 26 24 23 28 28 H 1.09008 * 109.47293 * 94.07408 * 1 2 3 29 29 H 1.09004 * 109.47409 * 214.07321 * 1 2 3 30 30 H 1.09000 * 109.47164 * 334.07571 * 1 2 3 31 31 H 1.08993 * 109.46692 * 149.99867 * 3 2 1 32 32 H 1.08991 * 109.46770 * 29.99956 * 3 2 1 33 33 H 1.09006 * 109.47121 * 60.00099 * 4 3 2 34 34 H 1.09001 * 109.47286 * 300.00247 * 4 3 2 35 35 H 1.09005 * 109.48912 * 52.78599 * 6 5 4 36 36 H 1.08998 * 109.49227 * 292.70917 * 6 5 4 37 37 H 1.08994 * 109.62906 * 173.54006 * 7 6 5 38 38 H 1.08998 * 109.63320 * 293.93134 * 7 6 5 39 39 H 0.96993 * 120.00461 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.62827 * 170.89777 * 17 8 7 41 41 H 1.08998 * 109.63117 * 291.47935 * 17 8 7 42 42 H 1.09002 * 109.49097 * 67.29950 * 18 5 4 43 43 H 1.09000 * 109.52125 * 307.23240 * 18 5 4 44 44 H 1.08001 * 126.01196 * 0.02562 * 22 21 19 45 45 H 0.96700 * 114.00070 * 90.02470 * 25 24 23 46 46 H 1.08998 * 109.46635 * 274.88405 * 27 26 24 47 47 H 1.08997 * 109.47098 * 34.88367 * 27 26 24 48 48 H 1.08997 * 109.47090 * 154.88851 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1875 2.9823 -1.4425 6 6 3.6570 3.3191 -2.7931 7 6 4.2562 4.7294 -2.7852 8 7 5.2842 4.7942 -1.7352 9 6 6.5412 5.2628 -2.0103 10 1 7.3845 4.9196 -1.4295 11 6 6.7314 6.1790 -3.0356 12 7 5.6925 6.7061 -3.6484 13 14 8.4617 6.6640 -3.5459 14 1 9.1999 5.4583 -4.0005 15 1 8.3929 7.6492 -4.6548 16 1 9.1677 7.2694 -2.3882 17 6 4.9265 4.3419 -0.3821 18 6 4.3008 2.9469 -0.4848 19 6 2.1388 -1.1672 -0.0005 20 8 3.3515 -1.1699 0.1050 21 6 1.4124 -2.4316 -0.1280 22 6 0.0839 -2.5887 -0.4102 23 7 -0.1790 -3.8945 -0.4364 24 6 0.9187 -4.5743 -0.1849 25 8 1.0130 -5.9221 -0.1339 26 7 1.9368 -3.7098 0.0075 27 6 3.3290 -4.0543 0.3066 28 1 -0.3634 -0.0730 -1.0251 29 1 -0.3634 -0.8513 0.5758 30 1 -0.3633 0.9242 0.4493 31 1 3.1498 1.1383 0.5138 32 1 1.6084 2.0283 0.5138 33 1 1.5000 1.8408 -1.9563 34 1 3.0415 0.9508 -1.9563 35 1 2.8186 3.2840 -3.4888 36 1 4.4175 2.6024 -3.1031 37 1 4.7086 4.9405 -3.7540 38 1 3.4728 5.4590 -2.5801 39 1 5.8254 7.3460 -4.3651 40 1 5.8221 4.2969 0.2376 41 1 4.2082 5.0340 0.0573 42 1 5.0524 2.2354 -0.8269 43 1 3.9299 2.6417 0.4937 44 1 -0.6271 -1.7941 -0.5818 45 1 1.2264 -6.3338 -0.9824 46 1 3.4442 -4.2012 1.3805 47 1 3.5965 -4.9724 -0.2164 48 1 3.9820 -3.2457 -0.0216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691940079.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:40 Heat of formation + Delta-G solvation = 61.494846 kcal Electronic energy + Delta-G solvation = -29696.018559 eV Core-core repulsion = 25597.212714 eV Total energy + Delta-G solvation = -4098.805845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.71529 -39.95109 -38.16687 -37.74455 -36.24016 -34.59928 -34.21686 -31.65558 -30.73453 -29.78842 -28.53458 -27.72645 -27.08282 -25.97318 -23.82923 -22.90302 -22.41056 -22.15723 -21.12414 -19.71729 -19.06042 -18.91139 -17.47677 -17.07421 -17.00669 -16.55793 -15.83211 -15.69209 -14.97443 -14.74717 -14.63766 -14.52342 -14.37061 -14.14333 -13.63661 -13.44353 -13.38202 -13.29609 -13.17123 -13.08168 -12.92726 -12.67866 -12.32540 -11.99798 -11.83309 -11.37578 -11.08122 -10.85045 -10.70896 -10.62149 -10.47965 -10.27278 -10.23904 -10.12870 -10.00250 -9.73621 -9.64782 -8.99454 -8.83659 -8.48949 -7.80427 -6.61399 -5.73004 -3.19698 0.78662 1.73878 2.21458 2.74270 2.94029 3.36520 3.39741 3.44572 3.45678 4.06453 4.35850 4.46643 4.52277 4.52947 4.74985 4.78306 4.85252 4.97906 5.03497 5.16795 5.21578 5.35360 5.43921 5.45460 5.54833 5.55197 5.82791 5.90574 5.93281 5.95871 5.97798 6.04070 6.19679 6.26468 6.30975 6.40783 6.57485 6.74518 6.95627 6.99813 7.03221 7.33173 7.34521 7.60588 7.69638 7.76473 7.82148 7.87152 8.49595 9.25942 9.87483 10.45390 11.33662 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.002172 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.336062 B =12885.481679 C =13405.520976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.598 5.598 3 C 0.114 3.886 4 C 0.041 3.959 5 N -0.528 5.528 6 C 0.036 3.964 7 C 0.174 3.826 8 N -0.597 5.597 9 C -0.246 4.246 10 H 0.065 0.935 11 C -0.002 4.002 12 N -0.910 5.910 13 Si 0.907 3.093 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.149 3.851 18 C 0.037 3.963 19 C 0.593 3.407 20 O -0.539 6.539 21 C -0.075 4.075 22 C 0.036 3.964 23 N -0.488 5.488 24 C 0.395 3.605 25 O -0.440 6.440 26 N -0.428 5.428 27 C 0.062 3.938 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.102 0.898 38 H 0.024 0.976 39 H 0.254 0.746 40 H 0.054 0.946 41 H 0.026 0.974 42 H 0.029 0.971 43 H 0.065 0.935 44 H 0.204 0.796 45 H 0.405 0.595 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.566 -21.235 6.817 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.331 5.331 3 C -0.008 4.008 4 C -0.088 4.088 5 N -0.254 5.254 6 C -0.093 4.093 7 C 0.048 3.952 8 N -0.321 5.321 9 C -0.376 4.376 10 H 0.083 0.917 11 C -0.199 4.199 12 N -0.556 5.556 13 Si 0.738 3.262 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.022 3.978 18 C -0.093 4.093 19 C 0.381 3.619 20 O -0.417 6.417 21 C -0.191 4.191 22 C -0.118 4.118 23 N -0.217 5.217 24 C 0.095 3.905 25 O -0.241 6.241 26 N -0.120 5.120 27 C -0.079 4.079 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.120 0.880 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.220 0.780 45 H 0.262 0.738 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.902 -21.185 7.365 25.875 hybrid contribution 2.259 -0.387 -0.945 2.479 sum -10.643 -21.572 6.420 24.897 Atomic orbital electron populations 1.22530 0.79287 1.04416 1.02389 1.47443 1.07250 1.05490 1.72906 1.21834 0.98217 0.82782 0.97963 1.22427 0.98996 0.91538 0.95877 1.62098 1.25959 1.28403 1.08949 1.22944 0.97380 1.01286 0.87700 1.21041 0.90049 0.88725 0.95382 1.44110 1.10209 1.74408 1.03334 1.19199 0.84414 1.18012 1.15946 0.91717 1.25103 0.97225 0.96943 1.00652 1.69903 1.27898 1.31527 1.26256 0.86289 0.84077 0.77955 0.77928 1.21152 1.21580 1.20931 1.20993 0.96679 0.91529 0.88600 1.22748 0.91779 0.99880 0.94868 1.16636 0.86250 0.82125 0.76895 1.90821 1.13395 1.86989 1.50529 1.20566 0.95401 0.85317 1.17858 1.23570 0.93229 0.93606 1.01407 1.70383 1.24724 1.04943 1.21636 1.20307 0.83277 0.83588 1.03284 1.84823 1.91343 1.10568 1.37343 1.45669 1.10157 1.05580 1.50613 1.22354 0.78573 1.03966 1.03038 0.91489 0.89607 0.89874 0.88910 0.89032 0.91068 0.95270 0.92249 0.95790 0.88038 0.95776 0.93560 0.92711 0.95641 0.95300 0.91660 0.77978 0.73758 0.89965 0.89571 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 8.73 59.85 0.52 0.88 16 2 N -0.60 -6.22 2.87 -183.24 -0.53 -6.75 16 3 C 0.11 1.37 4.75 -4.04 -0.02 1.35 16 4 C 0.04 0.59 5.59 -3.82 -0.02 0.57 16 5 N -0.53 -9.45 4.78 -234.32 -1.12 -10.57 16 6 C 0.04 0.73 5.58 -3.70 -0.02 0.71 16 7 C 0.17 4.27 5.40 -3.60 -0.02 4.25 16 8 N -0.60 -15.40 3.05 -172.01 -0.52 -15.93 16 9 C -0.25 -6.86 9.67 -15.06 -0.15 -7.01 16 10 H 0.07 1.77 7.84 -52.49 -0.41 1.35 16 11 C 0.00 -0.05 5.17 -17.43 -0.09 -0.14 16 12 N -0.91 -26.45 10.64 55.49 0.59 -25.86 16 13 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 C 0.15 3.21 6.69 -3.60 -0.02 3.19 16 18 C 0.04 0.67 5.04 -3.70 -0.02 0.65 16 19 C 0.59 7.36 7.62 -12.99 -0.10 7.26 16 20 O -0.54 -8.35 14.34 5.16 0.07 -8.28 16 21 C -0.08 -0.82 6.74 -81.98 -0.55 -1.37 16 22 C 0.04 0.34 9.76 -17.50 -0.17 0.17 16 23 N -0.49 -5.41 11.22 -14.62 -0.16 -5.57 16 24 C 0.39 3.94 9.01 -89.59 -0.81 3.13 16 25 O -0.44 -3.18 13.53 -17.31 -0.23 -3.41 16 26 N -0.43 -4.33 3.20 -122.12 -0.39 -4.72 16 27 C 0.06 0.49 10.84 59.85 0.65 1.14 16 28 H 0.07 0.34 7.43 -51.92 -0.39 -0.05 16 29 H 0.09 0.46 5.22 -51.93 -0.27 0.19 16 30 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 31 H 0.09 1.30 5.38 -51.93 -0.28 1.02 16 32 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.47 8.08 -51.93 -0.42 0.06 16 35 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 2.77 5.84 -51.93 -0.30 2.46 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.05 1.14 7.95 -51.93 -0.41 0.73 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.02 5.73 -51.93 -0.30 0.72 16 44 H 0.20 1.28 4.47 -52.49 -0.23 1.05 16 45 H 0.40 0.80 9.06 45.56 0.41 1.21 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.11 1.11 6.15 -51.93 -0.32 0.79 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -35.58 377.38 -8.70 -44.28 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.25 Total: -0.57 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -0.82 Total: 14.78 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -2.14 Total: -69.40 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.16 Total: -11.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.58 -8.70 -44.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691940079.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.774 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds