Wall clock time and date at job start Tue Mar 31 2020 20:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00015 * 2 1 4 4 C 1.52997 * 109.47228 * 270.00046 * 3 2 1 5 5 N 1.46901 * 109.47435 * 180.02562 * 4 3 2 6 6 C 1.46900 * 111.00280 * 169.99857 * 5 4 3 7 7 C 1.53236 * 109.33941 * 172.74318 * 6 5 4 8 8 N 1.47083 * 108.51687 * 53.83340 * 7 6 5 9 9 C 1.36937 * 120.88264 * 128.79110 * 8 7 6 10 10 H 1.07997 * 120.00372 * 207.53826 * 9 8 7 11 11 C 1.38816 * 119.99818 * 27.54027 * 9 8 7 12 12 N 1.31626 * 120.00186 * 7.28478 * 11 9 8 13 13 Si 1.86800 * 120.00247 * 187.28872 * 11 9 8 14 14 H 1.48502 * 109.47106 * 59.99361 * 13 11 9 15 15 H 1.48496 * 109.47279 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46889 * 299.99907 * 13 11 9 17 17 C 1.47084 * 118.24030 * 308.81126 * 8 7 6 18 18 C 1.46896 * 110.99583 * 45.69533 * 5 4 3 19 19 C 1.34778 * 119.99700 * 180.02562 * 2 1 3 20 20 O 1.21732 * 119.99738 * 185.74191 * 19 2 1 21 21 C 1.46372 * 120.00250 * 5.74403 * 19 2 1 22 22 C 1.36723 * 126.82930 * 8.28993 * 21 19 2 23 23 N 1.33224 * 107.96707 * 180.02562 * 22 21 19 24 24 C 1.31542 * 109.75795 * 359.97438 * 23 22 21 25 25 O 1.35206 * 125.48856 * 180.02562 * 24 23 22 26 26 N 1.34943 * 109.01305 * 359.72795 * 24 23 22 27 27 C 1.46506 * 126.53899 * 180.27450 * 26 24 23 28 28 H 1.09008 * 109.47293 * 94.07408 * 1 2 3 29 29 H 1.09004 * 109.47409 * 214.07321 * 1 2 3 30 30 H 1.09000 * 109.47164 * 334.07571 * 1 2 3 31 31 H 1.08993 * 109.46692 * 149.99867 * 3 2 1 32 32 H 1.08991 * 109.46770 * 29.99956 * 3 2 1 33 33 H 1.09006 * 109.47121 * 60.00099 * 4 3 2 34 34 H 1.09001 * 109.47286 * 300.00247 * 4 3 2 35 35 H 1.09005 * 109.48912 * 52.78599 * 6 5 4 36 36 H 1.08998 * 109.49227 * 292.70917 * 6 5 4 37 37 H 1.08994 * 109.62906 * 173.54006 * 7 6 5 38 38 H 1.08998 * 109.63320 * 293.93134 * 7 6 5 39 39 H 0.96993 * 120.00461 * 180.02562 * 12 11 9 40 40 H 1.08999 * 109.62827 * 170.89777 * 17 8 7 41 41 H 1.08998 * 109.63117 * 291.47935 * 17 8 7 42 42 H 1.09002 * 109.49097 * 67.29950 * 18 5 4 43 43 H 1.09000 * 109.52125 * 307.23240 * 18 5 4 44 44 H 1.08001 * 126.01196 * 0.02562 * 22 21 19 45 45 H 0.96700 * 114.00070 * 90.02470 * 25 24 23 46 46 H 1.08998 * 109.46635 * 274.88405 * 27 26 24 47 47 H 1.08997 * 109.47098 * 34.88367 * 27 26 24 48 48 H 1.08997 * 109.47090 * 154.88851 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1875 2.9823 -1.4425 6 6 3.6570 3.3191 -2.7931 7 6 4.2562 4.7294 -2.7852 8 7 5.2842 4.7942 -1.7352 9 6 6.5412 5.2628 -2.0103 10 1 7.3845 4.9196 -1.4295 11 6 6.7314 6.1790 -3.0356 12 7 5.6925 6.7061 -3.6484 13 14 8.4617 6.6640 -3.5459 14 1 9.1999 5.4583 -4.0005 15 1 8.3929 7.6492 -4.6548 16 1 9.1677 7.2694 -2.3882 17 6 4.9265 4.3419 -0.3821 18 6 4.3008 2.9469 -0.4848 19 6 2.1388 -1.1672 -0.0005 20 8 3.3515 -1.1699 0.1050 21 6 1.4124 -2.4316 -0.1280 22 6 0.0839 -2.5887 -0.4102 23 7 -0.1790 -3.8945 -0.4364 24 6 0.9187 -4.5743 -0.1849 25 8 1.0130 -5.9221 -0.1339 26 7 1.9368 -3.7098 0.0075 27 6 3.3290 -4.0543 0.3066 28 1 -0.3634 -0.0730 -1.0251 29 1 -0.3634 -0.8513 0.5758 30 1 -0.3633 0.9242 0.4493 31 1 3.1498 1.1383 0.5138 32 1 1.6084 2.0283 0.5138 33 1 1.5000 1.8408 -1.9563 34 1 3.0415 0.9508 -1.9563 35 1 2.8186 3.2840 -3.4888 36 1 4.4175 2.6024 -3.1031 37 1 4.7086 4.9405 -3.7540 38 1 3.4728 5.4590 -2.5801 39 1 5.8254 7.3460 -4.3651 40 1 5.8221 4.2969 0.2376 41 1 4.2082 5.0340 0.0573 42 1 5.0524 2.2354 -0.8269 43 1 3.9299 2.6417 0.4937 44 1 -0.6271 -1.7941 -0.5818 45 1 1.2264 -6.3338 -0.9824 46 1 3.4442 -4.2012 1.3805 47 1 3.5965 -4.9724 -0.2164 48 1 3.9820 -3.2457 -0.0216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691940079.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:38 Heat of formation + Delta-G solvation = 32.004732 kcal Electronic energy + Delta-G solvation = -29697.297346 eV Core-core repulsion = 25597.212714 eV Total energy + Delta-G solvation = -4100.084632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.43466 -40.87084 -39.66038 -38.37520 -37.26458 -36.12576 -35.06098 -33.42549 -32.13715 -31.23704 -29.66923 -28.56484 -27.83105 -27.41247 -25.39050 -24.28462 -23.78404 -22.98555 -22.24765 -20.88135 -20.45943 -19.59200 -18.79458 -18.24826 -17.77885 -17.64917 -17.03889 -16.63613 -16.48585 -15.95044 -15.77324 -15.61213 -15.33356 -15.25532 -15.20414 -15.05412 -14.90300 -14.39082 -14.02097 -13.86668 -13.80239 -13.75871 -13.25129 -13.18109 -13.12841 -12.89120 -12.61796 -12.54450 -12.36503 -12.10623 -11.97098 -11.89265 -11.52428 -11.48354 -11.41267 -11.05623 -10.92226 -10.59068 -9.84807 -9.58779 -9.33171 -8.65621 -7.84625 -5.34988 0.04052 1.04720 1.46048 1.48221 1.49019 1.55037 1.94945 2.12138 2.49949 2.77956 3.02976 3.30022 3.36786 3.68548 3.75322 3.86032 3.93435 4.04332 4.18853 4.20620 4.24942 4.31989 4.33831 4.47661 4.54681 4.56867 4.61719 4.68497 4.68913 4.78895 4.86619 4.89388 4.94353 4.97546 5.04426 5.20939 5.25529 5.40154 5.42882 5.49712 5.58686 5.76207 6.11959 6.18902 6.21133 6.40718 6.50079 6.64463 6.95706 7.14894 7.84348 8.37428 9.19623 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.002172 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.336062 B =12885.481679 C =13405.520976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.593 5.593 3 C 0.122 3.878 4 C 0.049 3.951 5 N -0.529 5.529 6 C 0.051 3.949 7 C 0.181 3.819 8 N -0.618 5.618 9 C -0.263 4.263 10 H 0.065 0.935 11 C -0.054 4.054 12 N -0.937 5.937 13 Si 0.973 3.027 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.275 1.275 17 C 0.144 3.856 18 C 0.050 3.950 19 C 0.588 3.412 20 O -0.581 6.581 21 C -0.101 4.101 22 C 0.051 3.949 23 N -0.515 5.515 24 C 0.401 3.599 25 O -0.442 6.442 26 N -0.434 5.434 27 C 0.062 3.938 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.008 0.992 35 H 0.083 0.917 36 H 0.008 0.992 37 H 0.070 0.930 38 H 0.003 0.997 39 H 0.251 0.749 40 H 0.057 0.943 41 H 0.026 0.974 42 H 0.008 0.992 43 H 0.099 0.901 44 H 0.232 0.768 45 H 0.428 0.572 46 H 0.087 0.913 47 H 0.114 0.886 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.094 -22.620 7.442 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.325 5.325 3 C -0.001 4.001 4 C -0.080 4.080 5 N -0.254 5.254 6 C -0.078 4.078 7 C 0.056 3.944 8 N -0.342 5.342 9 C -0.393 4.393 10 H 0.083 0.917 11 C -0.248 4.248 12 N -0.584 5.584 13 Si 0.801 3.199 14 H -0.207 1.207 15 H -0.217 1.217 16 H -0.201 1.201 17 C 0.019 3.981 18 C -0.079 4.079 19 C 0.377 3.623 20 O -0.463 6.463 21 C -0.216 4.216 22 C -0.103 4.103 23 N -0.245 5.245 24 C 0.101 3.899 25 O -0.246 6.246 26 N -0.127 5.127 27 C -0.079 4.079 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.027 0.973 35 H 0.101 0.899 36 H 0.026 0.974 37 H 0.088 0.912 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.027 0.973 43 H 0.117 0.883 44 H 0.248 0.752 45 H 0.290 0.710 46 H 0.105 0.895 47 H 0.133 0.867 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.464 -22.603 8.003 28.003 hybrid contribution 2.667 -0.048 -1.105 2.887 sum -11.797 -22.652 6.898 26.455 Atomic orbital electron populations 1.22838 0.76505 1.06010 1.04006 1.47478 1.08855 1.04215 1.71904 1.21647 0.98212 0.84131 0.96096 1.22453 0.98790 0.88998 0.97736 1.62040 1.25358 1.30707 1.07301 1.22624 0.97588 0.97900 0.89738 1.20774 0.89132 0.90854 0.93686 1.44396 1.09905 1.74710 1.05213 1.19518 0.85544 1.18068 1.16134 0.91713 1.25872 1.00941 0.97183 1.00841 1.70089 1.29736 1.31975 1.26568 0.85259 0.79685 0.77490 0.77475 1.20654 1.21667 1.20125 1.21147 0.97108 0.93140 0.86728 1.22583 0.91555 0.97076 0.96707 1.16926 0.85883 0.83105 0.76365 1.90800 1.15194 1.87634 1.52681 1.20506 0.95993 0.85142 1.19999 1.24073 0.93008 0.93800 0.99430 1.70426 1.25383 1.05667 1.22991 1.20457 0.83075 0.84392 1.01946 1.84782 1.91311 1.09224 1.39326 1.45824 1.10784 1.05514 1.50589 1.22419 0.77459 1.04328 1.03709 0.89651 0.88604 0.87877 0.91004 0.86631 0.88826 0.97330 0.89868 0.97417 0.91219 0.97888 0.93979 0.92429 0.95632 0.97324 0.88259 0.75217 0.71027 0.89481 0.86734 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.42 8.73 127.77 1.12 1.54 16 2 N -0.59 -11.04 2.87 -851.85 -2.45 -13.49 16 3 C 0.12 2.67 4.75 86.38 0.41 3.08 16 4 C 0.05 1.32 5.59 86.30 0.48 1.80 16 5 N -0.53 -18.29 4.78 -895.25 -4.28 -22.56 16 6 C 0.05 2.05 5.58 86.38 0.48 2.54 16 7 C 0.18 9.15 5.40 86.35 0.47 9.62 16 8 N -0.62 -32.54 3.05 -698.13 -2.13 -34.67 16 9 C -0.26 -14.92 9.67 84.03 0.81 -14.11 16 10 H 0.07 3.59 7.84 -2.91 -0.02 3.56 16 11 C -0.05 -3.06 5.17 84.86 0.44 -2.62 16 12 N -0.94 -55.86 10.64 21.65 0.23 -55.62 16 13 Si 0.97 45.68 29.56 68.60 2.03 47.71 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 C 0.14 6.24 6.69 86.35 0.58 6.82 16 18 C 0.05 1.81 5.04 86.38 0.44 2.24 16 19 C 0.59 14.12 7.62 86.36 0.66 14.78 16 20 O -0.58 -18.30 14.34 -4.45 -0.06 -18.37 16 21 C -0.10 -2.08 6.74 39.80 0.27 -1.81 16 22 C 0.05 0.85 9.76 84.13 0.82 1.68 16 23 N -0.52 -10.39 11.22 -313.64 -3.52 -13.91 16 24 C 0.40 7.30 9.01 179.99 1.62 8.92 16 25 O -0.44 -5.44 13.53 -84.86 -1.15 -6.59 16 26 N -0.43 -8.33 3.20 -651.99 -2.09 -10.41 16 27 C 0.06 0.94 10.84 127.77 1.38 2.33 16 28 H 0.09 0.50 7.43 -2.38 -0.02 0.49 16 29 H 0.10 0.71 5.22 -2.38 -0.01 0.69 16 30 H 0.10 0.57 7.85 -2.39 -0.02 0.55 16 31 H 0.07 1.91 5.38 -2.39 -0.01 1.90 16 32 H 0.12 2.02 7.86 -2.39 -0.02 2.00 16 33 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.01 0.27 8.08 -2.39 -0.02 0.25 16 35 H 0.08 2.93 8.11 -2.38 -0.02 2.91 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.07 3.95 5.84 -2.39 -0.01 3.94 16 38 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 40 H 0.06 2.40 7.95 -2.39 -0.02 2.39 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.10 2.94 5.73 -2.39 -0.01 2.92 16 44 H 0.23 2.14 4.47 -2.91 -0.01 2.13 16 45 H 0.43 0.66 9.06 -74.06 -0.67 -0.02 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.85 6.15 -2.39 -0.01 1.83 16 Total: -1.00 -79.44 377.38 -3.12 -82.55 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.33 Total: 8.56 kcal Atomic # 6 Polarization: 26.82 SS G_CDS: 9.97 Total: 36.79 kcal Atomic # 7 Polarization: -136.44 SS G_CDS: -14.23 Total: -150.67 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -1.21 Total: -24.95 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -79.44 -3.12 -82.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691940079.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.557 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds