Wall clock time and date at job start Tue Mar 31 2020 21:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37357 * 125.83356 * 2 1 4 4 N 1.29395 * 108.83325 * 179.75246 * 3 2 1 5 5 N 1.40173 * 108.13565 * 0.44669 * 4 3 2 6 6 C 1.46507 * 126.34567 * 179.81713 * 5 4 3 7 7 C 1.50701 * 109.46981 * 269.68525 * 6 5 4 8 8 O 1.21284 * 120.00079 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99789 * 180.02562 * 7 6 5 10 10 C 1.46923 * 120.63263 * 359.97438 * 9 7 6 11 11 C 1.53192 * 108.77592 * 126.41759 * 10 9 7 12 12 C 1.53041 * 109.31379 * 54.63270 * 11 10 9 13 13 C 1.53038 * 109.54141 * 298.63829 * 12 11 10 14 14 H 1.09004 * 109.52542 * 301.40100 * 13 12 11 15 15 C 1.52996 * 109.49989 * 181.31305 * 13 12 11 16 16 C 1.52997 * 109.47131 * 175.16115 * 15 13 12 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 15 13 18 18 C 1.36930 * 120.00258 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99225 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47312 * 60.00457 * 22 20 18 24 24 H 1.48506 * 109.46866 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47236 * 300.00219 * 22 20 18 26 26 C 1.46930 * 120.62774 * 180.02562 * 9 7 6 27 27 C 1.34815 * 125.83197 * 180.02562 * 2 1 3 28 28 O 1.21809 * 126.30418 * 359.93954 * 27 2 1 29 29 H 1.08997 * 109.46563 * 269.95388 * 1 2 3 30 30 H 1.08994 * 109.47130 * 29.95381 * 1 2 3 31 31 H 1.08996 * 109.46877 * 149.95804 * 1 2 3 32 32 H 1.08005 * 125.58280 * 0.05778 * 3 2 1 33 33 H 1.09003 * 109.46975 * 149.69202 * 6 5 4 34 34 H 1.08991 * 109.47350 * 29.68716 * 6 5 4 35 35 H 1.09003 * 109.58839 * 246.20256 * 10 9 7 36 36 H 1.08996 * 109.58671 * 6.62667 * 10 9 7 37 37 H 1.08991 * 109.50044 * 174.58937 * 11 10 9 38 38 H 1.09003 * 109.49659 * 294.65418 * 11 10 9 39 39 H 1.09000 * 109.46275 * 178.61533 * 12 11 10 40 40 H 1.08997 * 109.45681 * 58.65887 * 12 11 10 41 41 H 1.09001 * 109.46997 * 55.16541 * 15 13 12 42 42 H 1.08996 * 109.47452 * 295.16115 * 15 13 12 43 43 H 1.09001 * 109.47289 * 60.00050 * 16 15 13 44 44 H 1.09004 * 109.47261 * 300.00306 * 16 15 13 45 45 H 0.97001 * 119.99251 * 0.02562 * 17 16 15 46 46 H 0.97000 * 119.99950 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.58861 * 113.79747 * 26 9 7 48 48 H 1.08998 * 109.70387 * 353.44097 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0053 5 7 3.5344 -0.6662 -0.0015 6 6 4.7314 -1.5109 -0.0025 7 6 5.1410 -1.7999 -1.4236 8 8 4.4968 -1.3448 -2.3449 9 7 6.2232 -2.5642 -1.6708 10 6 7.0139 -3.1222 -0.5653 11 6 7.1352 -4.6367 -0.7611 12 6 7.7082 -4.9231 -2.1510 13 6 6.7605 -4.3724 -3.2189 14 1 5.7788 -4.8330 -3.1074 15 6 7.3179 -4.6880 -4.6083 16 6 6.3132 -4.2448 -5.6737 17 7 6.8468 -4.5476 -7.0041 18 6 6.1177 -4.2377 -8.1210 19 1 5.1495 -3.7696 -8.0211 20 6 6.6234 -4.5240 -9.3816 21 7 7.8036 -5.0939 -9.5032 22 14 5.6285 -4.1019 -10.9052 23 1 5.3781 -2.6386 -10.9432 24 1 6.3843 -4.5068 -12.1177 25 1 4.3322 -4.8251 -10.8659 26 6 6.6353 -2.8544 -3.0510 27 6 2.2542 -1.0930 -0.0005 28 8 1.8806 -2.2524 0.0000 29 1 -0.3632 -0.0008 1.0277 30 1 -0.3633 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 1.9250 2.1373 0.0009 33 1 4.5154 -2.4478 0.5111 34 1 5.5417 -0.9935 0.5111 35 1 8.0073 -2.6733 -0.5636 36 1 6.5154 -2.9149 0.3815 37 1 7.7989 -5.0498 -0.0017 38 1 6.1502 -5.0951 -0.6717 39 1 7.8185 -5.9994 -2.2836 40 1 8.6823 -4.4438 -2.2479 41 1 7.4904 -5.7607 -4.6955 42 1 8.2583 -4.1559 -4.7520 43 1 6.1406 -3.1721 -5.5866 44 1 5.3728 -4.7769 -5.5300 45 1 7.7165 -4.9676 -7.0937 46 1 8.1569 -5.2944 -10.3841 47 1 7.5977 -2.3838 -3.2516 48 1 5.8887 -2.4700 -3.7459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698670723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:24 Heat of formation + Delta-G solvation = 24.527250 kcal Electronic energy + Delta-G solvation = -29407.857104 eV Core-core repulsion = 25307.448224 eV Total energy + Delta-G solvation = -4100.408880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.67765 -40.33568 -37.91467 -37.46823 -35.51535 -35.34203 -33.56371 -32.17640 -32.14408 -30.64118 -28.90585 -27.64190 -27.04542 -25.28361 -24.16569 -22.98461 -22.57406 -21.69950 -20.88165 -20.24608 -19.31596 -17.99748 -17.66900 -16.95018 -16.67796 -16.46563 -16.13524 -15.75875 -15.37704 -14.88827 -14.83727 -14.65500 -14.35643 -13.91647 -13.70770 -13.55425 -13.35581 -13.31858 -13.13655 -13.00840 -12.82415 -12.70508 -12.40992 -12.18733 -12.14189 -11.41713 -11.12955 -11.09068 -11.01055 -10.79107 -10.76690 -10.57139 -10.52478 -10.40386 -10.22392 -9.90985 -9.81280 -9.58494 -8.81396 -8.78615 -8.73867 -6.83981 -5.69463 -2.97421 1.36624 1.67858 2.40158 2.43799 2.73275 2.96521 3.50118 3.53310 3.55384 4.07640 4.16921 4.40906 4.49482 4.57735 4.65651 4.70946 4.73273 4.80078 4.83174 4.96532 5.02680 5.12648 5.13433 5.18906 5.42923 5.51524 5.59243 5.62011 5.63410 5.70832 5.76229 5.81090 5.91809 6.01451 6.06388 6.19134 6.24503 6.28271 6.37923 6.48367 6.53253 6.95093 6.98044 7.21372 7.31325 7.77501 7.77848 8.00702 8.50162 9.60836 10.19586 10.54644 11.53700 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.002562 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.532131 B =10924.725756 C =12803.053458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.562 5.562 3 C 0.257 3.743 4 N -0.274 5.274 5 N -0.439 5.439 6 C 0.146 3.854 7 C 0.496 3.504 8 O -0.521 6.521 9 N -0.609 5.609 10 C 0.104 3.896 11 C -0.136 4.136 12 C -0.115 4.115 13 C -0.096 4.096 14 H 0.074 0.926 15 C -0.118 4.118 16 C 0.150 3.850 17 N -0.734 5.734 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.116 3.884 27 C 0.652 3.348 28 O -0.551 6.551 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.020 0.980 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.070 0.930 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 10.863 29.760 32.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.291 5.291 3 C -0.042 4.042 4 N -0.095 5.095 5 N -0.259 5.259 6 C 0.020 3.980 7 C 0.282 3.718 8 O -0.396 6.396 9 N -0.343 5.343 10 C -0.019 4.019 11 C -0.174 4.174 12 C -0.153 4.153 13 C -0.116 4.116 14 H 0.092 0.908 15 C -0.156 4.156 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.585 5.585 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.006 4.006 27 C 0.352 3.648 28 O -0.424 6.424 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.248 0.752 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.633 10.592 29.155 31.721 hybrid contribution -0.915 -0.122 -1.007 1.366 sum -7.548 10.470 28.148 30.966 Atomic orbital electron populations 1.21833 0.74025 1.04988 1.03419 1.45858 1.08927 1.06607 1.67679 1.25923 0.85744 0.94783 0.97789 1.76979 1.18316 0.91359 1.22853 1.48203 1.05428 1.03213 1.69053 1.21261 0.85730 0.95128 0.95842 1.20838 0.80517 0.78952 0.91504 1.90764 1.52407 1.50617 1.45769 1.48127 1.27776 1.50322 1.08096 1.21817 0.96371 0.94625 0.89046 1.21933 1.02211 0.95001 0.98263 1.21588 0.98822 1.01478 0.93378 1.21476 0.99877 0.94872 0.95383 0.90766 1.21723 0.99602 1.01709 0.92587 1.20713 0.94555 0.97099 0.85345 1.42361 1.21780 1.73811 0.99825 1.19223 0.99921 1.32617 0.85051 0.91288 1.24733 0.97149 1.01802 0.97482 1.69653 1.17941 1.48333 1.22596 0.86254 0.79110 0.78052 0.82738 1.21263 1.21689 1.21290 1.21845 1.01420 0.95697 0.81622 1.16643 0.81894 0.85116 0.81150 1.91094 1.77598 1.15267 1.58401 0.90842 0.89218 0.89331 0.75202 0.85895 0.85818 0.90712 0.90217 0.90559 0.91306 0.91325 0.91582 0.91499 0.91754 0.96235 0.96546 0.78362 0.93551 0.91169 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.05 59.85 0.66 1.16 16 2 N -0.56 -5.13 3.14 -130.11 -0.41 -5.54 16 3 C 0.26 1.83 12.66 -89.13 -1.13 0.70 16 4 N -0.27 -2.92 12.53 29.87 0.37 -2.54 16 5 N -0.44 -5.43 3.11 -66.31 -0.21 -5.64 16 6 C 0.15 1.48 5.22 -5.19 -0.03 1.45 16 7 C 0.50 6.86 7.77 -10.99 -0.09 6.78 16 8 O -0.52 -9.83 15.85 5.55 0.09 -9.74 16 9 N -0.61 -7.18 2.97 -172.74 -0.51 -7.69 16 10 C 0.10 0.78 6.34 -3.71 -0.02 0.76 16 11 C -0.14 -1.06 6.08 -26.61 -0.16 -1.23 16 12 C -0.12 -1.16 5.17 -26.69 -0.14 -1.30 16 13 C -0.10 -1.30 2.34 -90.48 -0.21 -1.51 16 14 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 15 C -0.12 -1.95 4.80 -26.73 -0.13 -2.08 16 16 C 0.15 3.27 6.02 -4.04 -0.02 3.24 16 17 N -0.73 -19.79 5.60 -59.90 -0.34 -20.13 16 18 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 19 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 20 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 21 N -0.94 -29.34 13.06 55.49 0.72 -28.62 16 22 Si 0.91 23.44 29.55 -169.99 -5.02 18.41 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 C 0.12 1.62 5.32 -3.69 -0.02 1.60 16 27 C 0.65 8.86 8.60 -86.74 -0.75 8.11 16 28 O -0.55 -9.30 17.71 5.09 0.09 -9.21 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.23 0.30 8.06 -52.48 -0.42 -0.12 16 33 H 0.12 1.04 7.66 -51.93 -0.40 0.64 16 34 H 0.12 0.83 7.94 -51.93 -0.41 0.42 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.39 5.93 -51.93 -0.31 0.08 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.44 6.69 -51.93 -0.35 0.09 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 10.66 7.67 -40.82 -0.31 10.35 16 46 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.10 1.72 5.72 -51.93 -0.30 1.42 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -41.82 393.30 -9.10 -50.92 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.54 Total: 3.94 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -2.28 Total: 9.91 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.37 Total: -70.16 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.18 Total: -18.95 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -41.82 -9.10 -50.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698670723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.451 kcal (2) G-P(sol) polarization free energy of solvation -41.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds