Wall clock time and date at job start Tue Mar 31 2020 21:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37357 * 125.83356 * 2 1 4 4 N 1.29395 * 108.83325 * 179.75246 * 3 2 1 5 5 N 1.40173 * 108.13565 * 0.44669 * 4 3 2 6 6 C 1.46507 * 126.34567 * 179.81713 * 5 4 3 7 7 C 1.50701 * 109.46981 * 269.68525 * 6 5 4 8 8 O 1.21284 * 120.00079 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99789 * 180.02562 * 7 6 5 10 10 C 1.46923 * 120.63263 * 359.97438 * 9 7 6 11 11 C 1.53192 * 108.77592 * 126.41759 * 10 9 7 12 12 C 1.53041 * 109.31379 * 54.63270 * 11 10 9 13 13 C 1.53038 * 109.54141 * 298.63829 * 12 11 10 14 14 H 1.09004 * 109.52542 * 301.40100 * 13 12 11 15 15 C 1.52996 * 109.49989 * 181.31305 * 13 12 11 16 16 C 1.52997 * 109.47131 * 175.16115 * 15 13 12 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 15 13 18 18 C 1.36930 * 120.00258 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99225 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47312 * 60.00457 * 22 20 18 24 24 H 1.48506 * 109.46866 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47236 * 300.00219 * 22 20 18 26 26 C 1.46930 * 120.62774 * 180.02562 * 9 7 6 27 27 C 1.34815 * 125.83197 * 180.02562 * 2 1 3 28 28 O 1.21809 * 126.30418 * 359.93954 * 27 2 1 29 29 H 1.08997 * 109.46563 * 269.95388 * 1 2 3 30 30 H 1.08994 * 109.47130 * 29.95381 * 1 2 3 31 31 H 1.08996 * 109.46877 * 149.95804 * 1 2 3 32 32 H 1.08005 * 125.58280 * 0.05778 * 3 2 1 33 33 H 1.09003 * 109.46975 * 149.69202 * 6 5 4 34 34 H 1.08991 * 109.47350 * 29.68716 * 6 5 4 35 35 H 1.09003 * 109.58839 * 246.20256 * 10 9 7 36 36 H 1.08996 * 109.58671 * 6.62667 * 10 9 7 37 37 H 1.08991 * 109.50044 * 174.58937 * 11 10 9 38 38 H 1.09003 * 109.49659 * 294.65418 * 11 10 9 39 39 H 1.09000 * 109.46275 * 178.61533 * 12 11 10 40 40 H 1.08997 * 109.45681 * 58.65887 * 12 11 10 41 41 H 1.09001 * 109.46997 * 55.16541 * 15 13 12 42 42 H 1.08996 * 109.47452 * 295.16115 * 15 13 12 43 43 H 1.09001 * 109.47289 * 60.00050 * 16 15 13 44 44 H 1.09004 * 109.47261 * 300.00306 * 16 15 13 45 45 H 0.97001 * 119.99251 * 0.02562 * 17 16 15 46 46 H 0.97000 * 119.99950 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.58861 * 113.79747 * 26 9 7 48 48 H 1.08998 * 109.70387 * 353.44097 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0053 5 7 3.5344 -0.6662 -0.0015 6 6 4.7314 -1.5109 -0.0025 7 6 5.1410 -1.7999 -1.4236 8 8 4.4968 -1.3448 -2.3449 9 7 6.2232 -2.5642 -1.6708 10 6 7.0139 -3.1222 -0.5653 11 6 7.1352 -4.6367 -0.7611 12 6 7.7082 -4.9231 -2.1510 13 6 6.7605 -4.3724 -3.2189 14 1 5.7788 -4.8330 -3.1074 15 6 7.3179 -4.6880 -4.6083 16 6 6.3132 -4.2448 -5.6737 17 7 6.8468 -4.5476 -7.0041 18 6 6.1177 -4.2377 -8.1210 19 1 5.1495 -3.7696 -8.0211 20 6 6.6234 -4.5240 -9.3816 21 7 7.8036 -5.0939 -9.5032 22 14 5.6285 -4.1019 -10.9052 23 1 5.3781 -2.6386 -10.9432 24 1 6.3843 -4.5068 -12.1177 25 1 4.3322 -4.8251 -10.8659 26 6 6.6353 -2.8544 -3.0510 27 6 2.2542 -1.0930 -0.0005 28 8 1.8806 -2.2524 0.0000 29 1 -0.3632 -0.0008 1.0277 30 1 -0.3633 0.8903 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 1.9250 2.1373 0.0009 33 1 4.5154 -2.4478 0.5111 34 1 5.5417 -0.9935 0.5111 35 1 8.0073 -2.6733 -0.5636 36 1 6.5154 -2.9149 0.3815 37 1 7.7989 -5.0498 -0.0017 38 1 6.1502 -5.0951 -0.6717 39 1 7.8185 -5.9994 -2.2836 40 1 8.6823 -4.4438 -2.2479 41 1 7.4904 -5.7607 -4.6955 42 1 8.2583 -4.1559 -4.7520 43 1 6.1406 -3.1721 -5.5866 44 1 5.3728 -4.7769 -5.5300 45 1 7.7165 -4.9676 -7.0937 46 1 8.1569 -5.2944 -10.3841 47 1 7.5977 -2.3838 -3.2516 48 1 5.8887 -2.4700 -3.7459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698670723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:23 Heat of formation + Delta-G solvation = -5.241837 kcal Electronic energy + Delta-G solvation = -29409.147989 eV Core-core repulsion = 25307.448224 eV Total energy + Delta-G solvation = -4101.699765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.44699 -41.33495 -39.01868 -38.45796 -37.01872 -36.26872 -35.09978 -33.47833 -32.91740 -32.29140 -29.89355 -28.86891 -27.86628 -26.18176 -25.90028 -24.05958 -23.71754 -22.53911 -22.22406 -21.40855 -20.22974 -19.21179 -18.81863 -18.46421 -17.55834 -17.26706 -17.03473 -16.76328 -16.68869 -16.31623 -15.85951 -15.58784 -15.50918 -15.30509 -15.14439 -14.83677 -14.46543 -14.34813 -14.17496 -14.02002 -13.60321 -13.50803 -13.45790 -13.31255 -13.01224 -12.95116 -12.84286 -12.61907 -12.34183 -12.20864 -11.98422 -11.92471 -11.79439 -11.65061 -11.49433 -11.46415 -11.21778 -10.97099 -10.74062 -9.72377 -9.68207 -9.07557 -8.01460 -5.31284 0.62905 1.05706 1.41599 1.41725 1.45806 1.51529 1.52299 1.92357 2.26159 2.50999 3.30643 3.32846 3.41950 3.61597 3.80253 3.86718 3.99473 4.03966 4.05862 4.07567 4.10673 4.29356 4.35497 4.38480 4.47485 4.50459 4.50669 4.65584 4.68027 4.76650 4.81749 4.83995 4.86872 4.88268 4.95972 5.02934 5.13154 5.21687 5.28749 5.34417 5.41068 5.46608 5.50337 5.65221 6.21376 6.28086 6.57159 6.87531 7.00866 7.27062 8.01210 8.27646 9.21749 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.002562 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.532131 B =10924.725756 C =12803.053458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.560 5.560 3 C 0.278 3.722 4 N -0.310 5.310 5 N -0.447 5.447 6 C 0.146 3.854 7 C 0.488 3.512 8 O -0.585 6.585 9 N -0.603 5.603 10 C 0.096 3.904 11 C -0.131 4.131 12 C -0.111 4.111 13 C -0.086 4.086 14 H 0.055 0.945 15 C -0.103 4.103 16 C 0.151 3.849 17 N -0.745 5.745 18 C -0.257 4.257 19 H 0.066 0.934 20 C -0.072 4.072 21 N -0.966 5.966 22 Si 0.976 3.024 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.118 3.882 27 C 0.630 3.370 28 O -0.600 6.600 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.289 0.711 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.011 0.989 44 H 0.004 0.996 45 H 0.376 0.624 46 H 0.255 0.745 47 H 0.080 0.920 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 12.263 32.085 34.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.288 5.288 3 C -0.020 4.020 4 N -0.131 5.131 5 N -0.266 5.266 6 C 0.022 3.978 7 C 0.275 3.725 8 O -0.465 6.465 9 N -0.336 5.336 10 C -0.025 4.025 11 C -0.169 4.169 12 C -0.149 4.149 13 C -0.106 4.106 14 H 0.073 0.927 15 C -0.142 4.142 16 C 0.024 3.976 17 N -0.388 5.388 18 C -0.388 4.388 19 H 0.084 0.916 20 C -0.264 4.264 21 N -0.616 5.616 22 Si 0.804 3.196 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.205 1.205 26 C -0.004 4.004 27 C 0.329 3.671 28 O -0.478 6.478 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.305 0.695 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.029 0.971 44 H 0.022 0.978 45 H 0.209 0.791 46 H 0.063 0.937 47 H 0.098 0.902 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.393 12.017 31.546 34.357 hybrid contribution -1.033 -0.499 -1.709 2.059 sum -7.427 11.517 29.837 32.833 Atomic orbital electron populations 1.22168 0.71838 1.05762 1.05089 1.46137 1.10255 1.06019 1.66354 1.27123 0.84478 0.96138 0.94224 1.76982 1.20342 0.90200 1.25568 1.48431 1.05441 1.04239 1.68496 1.21505 0.86522 0.96436 0.93358 1.21613 0.80099 0.78199 0.92550 1.90725 1.54543 1.53344 1.47890 1.48239 1.27593 1.49553 1.08225 1.22250 0.97255 0.94302 0.88669 1.21935 1.02268 0.95231 0.97447 1.21577 0.98345 1.01561 0.93383 1.21352 0.99837 0.94570 0.94791 0.92655 1.21592 0.98282 1.01597 0.92709 1.20825 0.95481 0.96368 0.84889 1.42545 1.21422 1.73741 1.01092 1.19566 1.00174 1.32659 0.86440 0.91604 1.25600 0.98398 1.01949 1.00478 1.69800 1.19384 1.49264 1.23197 0.85182 0.77729 0.78032 0.78644 1.20448 1.21230 1.20461 1.21603 1.00336 0.95848 0.82648 1.17087 0.82936 0.85521 0.81561 1.91029 1.78559 1.17377 1.60806 0.88759 0.85310 0.91664 0.69547 0.84275 0.81954 0.88414 0.86898 0.87085 0.92409 0.90959 0.90258 0.91331 0.91187 0.97140 0.97820 0.79145 0.93676 0.90231 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.05 127.77 1.41 2.20 16 2 N -0.56 -9.63 3.14 -683.71 -2.15 -11.78 16 3 C 0.28 3.29 12.66 179.83 2.28 5.57 16 4 N -0.31 -6.18 12.53 -59.42 -0.74 -6.93 16 5 N -0.45 -10.94 3.11 -481.77 -1.50 -12.44 16 6 C 0.15 2.83 5.22 85.63 0.45 3.28 16 7 C 0.49 13.74 7.77 87.66 0.68 14.42 16 8 O -0.59 -23.52 15.85 -3.04 -0.05 -23.57 16 9 N -0.60 -13.93 2.97 -818.83 -2.43 -16.36 16 10 C 0.10 1.13 6.34 86.36 0.55 1.68 16 11 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 12 C -0.11 -2.02 5.17 30.62 0.16 -1.86 16 13 C -0.09 -2.33 2.34 -10.70 -0.03 -2.36 16 14 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 15 C -0.10 -3.51 4.80 30.59 0.15 -3.37 16 16 C 0.15 6.90 6.02 86.38 0.52 7.42 16 17 N -0.75 -41.63 5.60 -343.44 -1.92 -43.56 16 18 C -0.26 -15.70 9.99 84.04 0.84 -14.86 16 19 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 21 N -0.97 -61.42 13.06 21.65 0.28 -61.14 16 22 Si 0.98 48.70 29.55 68.60 2.03 50.73 16 23 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 26 C 0.12 3.43 5.32 86.38 0.46 3.89 16 27 C 0.63 17.42 8.60 178.99 1.54 18.96 16 28 O -0.60 -21.33 17.71 -4.70 -0.08 -21.41 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 32 H 0.29 -0.59 8.06 -2.91 -0.02 -0.61 16 33 H 0.14 2.17 7.66 -2.39 -0.02 2.15 16 34 H 0.16 1.74 7.94 -2.39 -0.02 1.72 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 0.63 5.93 -2.39 -0.01 0.62 16 37 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.01 0.51 6.69 -2.39 -0.02 0.49 16 44 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 45 H 0.38 21.63 7.67 -92.71 -0.71 20.92 16 46 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.05 2.07 5.72 -2.39 -0.01 2.06 16 Total: -1.00 -98.17 393.30 3.34 -94.83 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.26 Total: 22.03 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 9.66 Total: 29.61 kcal Atomic # 7 Polarization: -143.74 SS G_CDS: -8.47 Total: -152.21 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.13 Total: -44.98 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -98.17 3.34 -94.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698670723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.583 kcal (2) G-P(sol) polarization free energy of solvation -98.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds