Wall clock time and date at job start Tue Mar 31 2020 20:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99874 * 2 1 4 4 C 1.52999 * 109.47356 * 66.04967 * 3 2 1 5 5 N 1.46498 * 109.47070 * 180.02562 * 4 3 2 6 6 C 1.46506 * 120.00239 * 90.00054 * 5 4 3 7 7 C 1.34777 * 119.99828 * 269.71859 * 5 4 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 5 4 9 9 C 1.50699 * 119.99772 * 180.27730 * 7 5 4 10 10 C 1.50701 * 109.46837 * 180.02562 * 9 7 5 11 11 C 1.39877 * 126.03844 * 90.02603 * 10 9 7 12 12 N 1.30838 * 108.20112 * 179.97438 * 11 10 9 13 13 N 1.40078 * 108.20470 * 359.97438 * 12 11 10 14 14 C 1.46508 * 126.03719 * 180.02562 * 13 12 11 15 15 C 1.34947 * 107.92936 * 359.76098 * 13 12 11 16 16 C 1.46900 * 110.99820 * 236.04558 * 2 1 3 17 17 C 1.50697 * 109.47417 * 293.95189 * 16 2 1 18 18 O 1.21294 * 119.99835 * 359.97438 * 17 16 2 19 19 N 1.34779 * 120.00024 * 180.02562 * 17 16 2 20 20 C 1.37101 * 119.99671 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00136 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99513 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99423 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00407 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46756 * 89.99950 * 24 22 20 26 26 H 1.48494 * 109.47273 * 210.00006 * 24 22 20 27 27 H 1.48495 * 109.46748 * 330.00208 * 24 22 20 28 28 H 1.08997 * 109.47661 * 60.00280 * 1 2 3 29 29 H 1.09003 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47337 * 299.99730 * 1 2 3 31 31 H 1.09002 * 109.47371 * 306.04679 * 3 2 1 32 32 H 1.09001 * 109.47180 * 186.05385 * 3 2 1 33 33 H 1.08993 * 109.47367 * 59.99535 * 4 3 2 34 34 H 1.09001 * 109.46864 * 299.99709 * 4 3 2 35 35 H 1.08999 * 109.46892 * 269.72399 * 6 5 4 36 36 H 1.09000 * 109.46803 * 29.71572 * 6 5 4 37 37 H 1.09000 * 109.47214 * 149.72366 * 6 5 4 38 38 H 1.08999 * 109.47685 * 300.00183 * 9 7 5 39 39 H 1.08997 * 109.47517 * 60.00530 * 9 7 5 40 40 H 1.07997 * 125.89844 * 0.02562 * 11 10 9 41 41 H 1.08997 * 109.46961 * 89.97274 * 14 13 12 42 42 H 1.08990 * 109.47484 * 209.97926 * 14 13 12 43 43 H 1.09008 * 109.46717 * 329.98117 * 14 13 12 44 44 H 1.08001 * 126.12907 * 180.23863 * 15 13 12 45 45 H 1.09003 * 109.47460 * 53.95617 * 16 2 1 46 46 H 1.09009 * 109.46901 * 173.95194 * 16 2 1 47 47 H 0.96994 * 120.00006 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99806 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1559 3.4253 1.3179 6 6 1.3354 4.5244 0.8029 7 6 3.3911 3.6735 1.7967 8 8 4.0704 2.7637 2.2231 9 6 3.9282 5.0815 1.8021 10 6 5.3187 5.0865 2.3832 11 6 6.5102 4.9288 1.6676 12 7 7.5062 4.9903 2.5137 13 7 6.9793 5.1898 3.7962 14 6 7.7511 5.3162 5.0351 15 6 5.6356 5.2510 3.6884 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9729 18 8 1.0054 -2.5833 -0.0029 19 7 2.0189 -3.1181 -1.9028 20 6 1.6923 -4.4412 -1.7531 21 1 1.1293 -4.7642 -0.8900 22 6 2.0856 -5.3666 -2.7121 23 7 1.7730 -6.6349 -2.5684 24 14 3.0587 -4.8079 -4.2056 25 1 4.5111 -4.8752 -3.9034 26 1 2.7510 -5.6939 -5.3568 27 1 2.6877 -3.4103 -4.5435 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.5610 1.9274 -0.8309 32 1 3.0796 1.3444 -0.1084 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0845 1.4265 35 1 1.5249 4.6506 -0.2630 36 1 0.2814 4.2953 0.9599 37 1 1.5895 5.4448 1.3287 38 1 3.9601 5.4623 0.7813 39 1 3.2794 5.7156 2.4063 40 1 6.5935 4.7825 0.6008 41 1 7.9957 6.3647 5.2054 42 1 7.1611 4.9403 5.8708 43 1 8.6712 4.7377 4.9505 44 1 4.9379 5.4013 4.4990 45 1 1.5611 -0.3873 -2.0629 46 1 3.0797 -0.6611 -1.1756 47 1 2.5248 -2.8281 -2.6779 48 1 2.0472 -7.2809 -3.2381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698984147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:17 Heat of formation + Delta-G solvation = 36.058456 kcal Electronic energy + Delta-G solvation = -28500.017535 eV Core-core repulsion = 24400.108686 eV Total energy + Delta-G solvation = -4099.908849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49645 -39.91303 -38.70545 -36.82115 -35.39509 -33.96184 -33.83416 -32.17323 -31.63107 -30.16557 -28.54163 -27.86113 -26.86151 -26.20474 -25.07720 -23.65678 -21.38081 -21.34824 -20.61950 -19.35519 -19.16958 -18.19574 -17.28119 -17.13958 -16.50096 -15.99575 -15.62921 -15.61540 -15.25990 -14.90397 -14.69893 -14.58305 -14.03703 -13.91931 -13.57480 -13.50986 -13.41708 -13.08448 -13.05343 -12.97340 -12.86566 -12.75528 -12.44553 -12.39031 -12.18313 -11.99106 -11.83863 -11.40163 -11.30592 -10.99121 -10.84952 -10.76742 -10.56048 -9.94747 -9.93018 -9.64805 -9.49511 -8.92704 -8.63702 -8.48207 -8.13441 -7.91231 -6.26987 -3.77997 1.64023 2.26090 2.44403 2.53642 2.92813 3.05838 3.10842 3.18253 3.79070 4.08301 4.14597 4.20535 4.46362 4.51765 4.70834 4.77242 4.80139 4.82062 4.86887 4.96783 4.99852 5.04284 5.08310 5.21331 5.26335 5.27249 5.38119 5.44336 5.51817 5.57519 5.63980 5.79811 5.80501 5.87583 5.91387 5.98104 6.05355 6.33496 6.38699 6.51774 6.72709 7.18011 7.20951 7.36808 7.45204 7.63170 8.09697 8.19225 8.65021 8.99796 9.47148 9.88667 10.86211 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002046 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.540602 B =13681.252472 C =14767.072828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.516 5.516 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.621 5.621 6 C 0.077 3.923 7 C 0.508 3.492 8 O -0.521 6.521 9 C -0.056 4.056 10 C -0.223 4.223 11 C 0.064 3.936 12 N -0.298 5.298 13 N -0.377 5.377 14 C 0.102 3.898 15 C 0.069 3.931 16 C 0.045 3.955 17 C 0.454 3.546 18 O -0.558 6.558 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.014 0.986 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.181 0.819 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.171 0.829 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 32.354 8.372 33.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.240 5.240 3 C -0.085 4.085 4 C -0.003 4.003 5 N -0.356 5.356 6 C -0.066 4.066 7 C 0.296 3.704 8 O -0.395 6.395 9 C -0.097 4.097 10 C -0.235 4.235 11 C -0.122 4.122 12 N -0.119 5.119 13 N -0.158 5.158 14 C -0.039 4.039 15 C -0.077 4.077 16 C -0.086 4.086 17 C 0.240 3.760 18 O -0.440 6.440 19 N -0.232 5.232 20 C -0.431 4.431 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.033 0.967 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.198 0.802 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.188 0.812 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.203 0.797 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.661 31.117 9.926 33.148 hybrid contribution -0.465 0.687 -2.228 2.377 sum 5.197 31.803 7.697 33.132 Atomic orbital electron populations 1.22610 0.86721 1.04651 0.98896 1.61441 1.08640 1.11218 1.42732 1.22434 1.00780 0.88770 0.96537 1.21457 0.98782 0.81048 0.99030 1.47909 1.16107 1.08471 1.63126 1.21830 0.95857 0.89670 0.99245 1.20810 0.80757 0.91502 0.77361 1.90760 1.56824 1.46628 1.45329 1.19918 0.92776 0.94189 1.02858 1.19414 0.94829 1.16363 0.92868 1.23717 0.89827 0.98870 0.99818 1.77356 1.22856 1.23939 0.87758 1.48395 1.04675 1.55871 1.06905 1.21849 0.97244 1.03041 0.81776 1.22220 0.85659 1.01516 0.98350 1.21885 1.00862 0.93945 0.91958 1.19637 0.85004 0.86441 0.84924 1.90522 1.42637 1.79957 1.30874 1.42213 1.51078 1.08377 1.21524 1.19427 1.33695 0.80326 1.09696 0.86262 1.25036 0.97922 0.95147 0.98134 1.69626 1.45817 1.01122 1.35702 0.86673 0.80979 0.78656 0.83094 1.19594 1.20230 1.19562 0.96732 0.88475 0.92000 0.95254 0.90635 0.88796 0.90483 0.92556 0.90961 0.90924 0.88222 0.88550 0.80237 0.90830 0.89474 0.89239 0.81191 0.93416 0.89277 0.79745 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.96 60.06 0.54 0.83 16 2 N -0.52 -8.67 4.50 -244.37 -1.10 -9.77 16 3 C 0.04 0.59 5.28 -3.83 -0.02 0.57 16 4 C 0.12 1.40 5.38 -4.04 -0.02 1.38 16 5 N -0.62 -5.77 2.87 -181.57 -0.52 -6.29 16 6 C 0.08 0.39 10.29 59.85 0.62 1.00 16 7 C 0.51 5.53 7.67 -10.99 -0.08 5.45 16 8 O -0.52 -8.33 15.61 5.55 0.09 -8.24 16 9 C -0.06 -0.40 4.74 -29.03 -0.14 -0.53 16 10 C -0.22 -2.12 4.59 -105.05 -0.48 -2.60 16 11 C 0.06 0.69 11.96 -17.36 -0.21 0.48 16 12 N -0.30 -3.62 12.58 30.63 0.39 -3.23 16 13 N -0.38 -3.65 4.01 -68.16 -0.27 -3.92 16 14 C 0.10 0.55 11.47 59.85 0.69 1.23 16 15 C 0.07 0.61 11.40 -17.22 -0.20 0.41 16 16 C 0.05 0.80 5.45 -4.98 -0.03 0.78 16 17 C 0.45 10.65 7.47 -10.99 -0.08 10.57 16 18 O -0.56 -15.18 13.91 5.55 0.08 -15.10 16 19 N -0.59 -14.51 5.09 -10.96 -0.06 -14.57 16 20 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 21 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -26.18 13.96 55.50 0.77 -25.40 16 24 Si 0.88 19.81 27.74 -169.99 -4.71 15.09 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.10 1.88 5.83 -51.93 -0.30 1.58 16 30 H 0.06 0.82 6.47 -51.93 -0.34 0.48 16 31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 33 H 0.09 1.38 7.42 -51.93 -0.39 0.99 16 34 H 0.08 0.78 6.30 -51.93 -0.33 0.45 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.31 7.89 -51.93 -0.41 -0.10 16 37 H 0.07 0.20 6.44 -51.93 -0.33 -0.13 16 38 H 0.10 0.50 8.11 -51.93 -0.42 0.08 16 39 H 0.10 0.42 7.40 -51.93 -0.38 0.03 16 40 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.09 1.45 7.93 -51.92 -0.41 1.04 16 47 H 0.37 8.00 5.76 -40.82 -0.24 7.76 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -39.24 397.56 -6.34 -45.58 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.32 Total: 8.14 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 0.33 Total: 11.72 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.79 Total: -63.18 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.16 Total: -23.34 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.71 Total: 15.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.24 -6.34 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698984147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.635 kcal (2) G-P(sol) polarization free energy of solvation -39.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds