Wall clock time and date at job start Tue Mar 31 2020 20:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99874 * 2 1 4 4 C 1.52999 * 109.47356 * 66.04967 * 3 2 1 5 5 N 1.46498 * 109.47070 * 180.02562 * 4 3 2 6 6 C 1.46506 * 120.00239 * 90.00054 * 5 4 3 7 7 C 1.34777 * 119.99828 * 269.71859 * 5 4 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 5 4 9 9 C 1.50699 * 119.99772 * 180.27730 * 7 5 4 10 10 C 1.50701 * 109.46837 * 180.02562 * 9 7 5 11 11 C 1.39877 * 126.03844 * 90.02603 * 10 9 7 12 12 N 1.30838 * 108.20112 * 179.97438 * 11 10 9 13 13 N 1.40078 * 108.20470 * 359.97438 * 12 11 10 14 14 C 1.46508 * 126.03719 * 180.02562 * 13 12 11 15 15 C 1.34947 * 107.92936 * 359.76098 * 13 12 11 16 16 C 1.46900 * 110.99820 * 236.04558 * 2 1 3 17 17 C 1.50697 * 109.47417 * 293.95189 * 16 2 1 18 18 O 1.21294 * 119.99835 * 359.97438 * 17 16 2 19 19 N 1.34779 * 120.00024 * 180.02562 * 17 16 2 20 20 C 1.37101 * 119.99671 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00136 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99513 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99423 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00407 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46756 * 89.99950 * 24 22 20 26 26 H 1.48494 * 109.47273 * 210.00006 * 24 22 20 27 27 H 1.48495 * 109.46748 * 330.00208 * 24 22 20 28 28 H 1.08997 * 109.47661 * 60.00280 * 1 2 3 29 29 H 1.09003 * 109.46946 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47337 * 299.99730 * 1 2 3 31 31 H 1.09002 * 109.47371 * 306.04679 * 3 2 1 32 32 H 1.09001 * 109.47180 * 186.05385 * 3 2 1 33 33 H 1.08993 * 109.47367 * 59.99535 * 4 3 2 34 34 H 1.09001 * 109.46864 * 299.99709 * 4 3 2 35 35 H 1.08999 * 109.46892 * 269.72399 * 6 5 4 36 36 H 1.09000 * 109.46803 * 29.71572 * 6 5 4 37 37 H 1.09000 * 109.47214 * 149.72366 * 6 5 4 38 38 H 1.08999 * 109.47685 * 300.00183 * 9 7 5 39 39 H 1.08997 * 109.47517 * 60.00530 * 9 7 5 40 40 H 1.07997 * 125.89844 * 0.02562 * 11 10 9 41 41 H 1.08997 * 109.46961 * 89.97274 * 14 13 12 42 42 H 1.08990 * 109.47484 * 209.97926 * 14 13 12 43 43 H 1.09008 * 109.46717 * 329.98117 * 14 13 12 44 44 H 1.08001 * 126.12907 * 180.23863 * 15 13 12 45 45 H 1.09003 * 109.47460 * 53.95617 * 16 2 1 46 46 H 1.09009 * 109.46901 * 173.95194 * 16 2 1 47 47 H 0.96994 * 120.00006 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99806 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1559 3.4253 1.3179 6 6 1.3354 4.5244 0.8029 7 6 3.3911 3.6735 1.7967 8 8 4.0704 2.7637 2.2231 9 6 3.9282 5.0815 1.8021 10 6 5.3187 5.0865 2.3832 11 6 6.5102 4.9288 1.6676 12 7 7.5062 4.9903 2.5137 13 7 6.9793 5.1898 3.7962 14 6 7.7511 5.3162 5.0351 15 6 5.6356 5.2510 3.6884 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9729 18 8 1.0054 -2.5833 -0.0029 19 7 2.0189 -3.1181 -1.9028 20 6 1.6923 -4.4412 -1.7531 21 1 1.1293 -4.7642 -0.8900 22 6 2.0856 -5.3666 -2.7121 23 7 1.7730 -6.6349 -2.5684 24 14 3.0587 -4.8079 -4.2056 25 1 4.5111 -4.8752 -3.9034 26 1 2.7510 -5.6939 -5.3568 27 1 2.6877 -3.4103 -4.5435 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.5610 1.9274 -0.8309 32 1 3.0796 1.3444 -0.1084 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0845 1.4265 35 1 1.5249 4.6506 -0.2630 36 1 0.2814 4.2953 0.9599 37 1 1.5895 5.4448 1.3287 38 1 3.9601 5.4623 0.7813 39 1 3.2794 5.7156 2.4063 40 1 6.5935 4.7825 0.6008 41 1 7.9957 6.3647 5.2054 42 1 7.1611 4.9403 5.8708 43 1 8.6712 4.7377 4.9505 44 1 4.9379 5.4013 4.4990 45 1 1.5611 -0.3873 -2.0629 46 1 3.0797 -0.6611 -1.1756 47 1 2.5248 -2.8281 -2.6779 48 1 2.0472 -7.2809 -3.2381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698984147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:16 Heat of formation + Delta-G solvation = 4.377472 kcal Electronic energy + Delta-G solvation = -28501.391326 eV Core-core repulsion = 24400.108686 eV Total energy + Delta-G solvation = -4101.282640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.15251 -40.79155 -40.38946 -38.14758 -36.36952 -35.84952 -34.54118 -33.76135 -32.85863 -31.15559 -29.45026 -28.95193 -27.47444 -27.13879 -26.48270 -25.00483 -22.47077 -22.02482 -21.37901 -21.26639 -20.22464 -19.87819 -18.01300 -17.89224 -17.76641 -17.13106 -16.86626 -16.55456 -16.39422 -16.25072 -15.82656 -15.52917 -15.30832 -15.23747 -14.85716 -14.39705 -14.36459 -14.22295 -14.04647 -13.89273 -13.74802 -13.66838 -13.39754 -13.28771 -13.10970 -12.99589 -12.92053 -12.66449 -12.54919 -12.51850 -12.41204 -11.98210 -11.79494 -11.49851 -11.48288 -10.79820 -10.41394 -10.33794 -10.23947 -9.62007 -9.28496 -9.19405 -8.41699 -6.02198 0.99160 1.28805 1.34874 1.43134 1.68062 1.76012 1.79138 1.94536 2.19874 2.22407 2.74115 3.13892 3.29254 3.67015 3.81075 4.00587 4.03267 4.09084 4.13820 4.28316 4.31613 4.35872 4.40071 4.43465 4.45833 4.48365 4.52242 4.62903 4.66777 4.67853 4.78909 4.83906 4.88729 4.92318 5.02479 5.09133 5.20931 5.23392 5.52138 5.59603 5.72079 5.88297 6.00245 6.17716 6.20118 6.53746 6.59457 6.76272 6.87962 7.35189 7.39158 7.96443 8.75936 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002046 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.540602 B =13681.252472 C =14767.072828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C 0.125 3.875 5 N -0.616 5.616 6 C 0.069 3.931 7 C 0.504 3.496 8 O -0.584 6.584 9 C -0.045 4.045 10 C -0.239 4.239 11 C 0.047 3.953 12 N -0.344 5.344 13 N -0.385 5.385 14 C 0.093 3.907 15 C 0.065 3.935 16 C 0.057 3.943 17 C 0.452 3.548 18 O -0.604 6.604 19 N -0.593 5.593 20 C -0.326 4.326 21 H 0.056 0.944 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.260 1.260 26 H -0.273 1.273 27 H -0.231 1.231 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.191 0.809 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.202 0.798 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 36.648 6.589 37.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.074 4.074 4 C 0.001 3.999 5 N -0.349 5.349 6 C -0.073 4.073 7 C 0.293 3.707 8 O -0.463 6.463 9 C -0.085 4.085 10 C -0.251 4.251 11 C -0.139 4.139 12 N -0.166 5.166 13 N -0.167 5.167 14 C -0.047 4.047 15 C -0.082 4.082 16 C -0.074 4.074 17 C 0.239 3.761 18 O -0.487 6.487 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.184 1.184 26 H -0.198 1.198 27 H -0.155 1.155 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.208 0.792 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.218 0.782 45 H 0.100 0.900 46 H 0.126 0.874 47 H 0.224 0.776 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.642 35.481 8.134 36.836 hybrid contribution -0.554 -0.657 -1.499 1.728 sum 5.088 34.824 6.635 35.814 Atomic orbital electron populations 1.22483 0.86221 1.02366 1.01174 1.61353 1.09379 1.13460 1.42836 1.22369 0.99752 0.87032 0.98222 1.21249 0.99541 0.82262 0.96872 1.47996 1.16113 1.08404 1.62428 1.22170 0.95752 0.89084 1.00259 1.21548 0.80588 0.92430 0.76103 1.90740 1.58606 1.48732 1.48243 1.19985 0.91679 0.91930 1.04917 1.19782 0.95629 1.16481 0.93184 1.24084 0.90454 0.98807 1.00535 1.77261 1.24319 1.25747 0.89237 1.48756 1.05472 1.55379 1.07057 1.22148 0.97182 1.04345 0.81002 1.22828 0.85789 1.00363 0.99212 1.21787 1.02231 0.89535 0.93882 1.20847 0.82972 0.88769 0.83480 1.90511 1.44173 1.81408 1.32651 1.42042 1.51818 1.06855 1.22759 1.18998 1.34771 0.83031 1.08755 0.92602 1.26110 0.98668 0.94697 1.01985 1.69806 1.47231 1.02940 1.37499 0.85373 0.78898 0.80187 0.77134 1.18448 1.19767 1.15457 0.94173 0.92963 0.89917 0.92478 0.92182 0.92622 0.88578 0.91248 0.89934 0.88118 0.85675 0.85084 0.79211 0.88989 0.87250 0.89860 0.78158 0.90018 0.87384 0.77599 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 8.96 127.69 1.14 1.90 16 2 N -0.55 -17.56 4.50 -927.05 -4.17 -21.73 16 3 C 0.05 1.32 5.28 86.30 0.46 1.78 16 4 C 0.12 2.70 5.38 86.38 0.46 3.17 16 5 N -0.62 -9.66 2.87 -846.76 -2.43 -12.10 16 6 C 0.07 0.36 10.29 127.77 1.31 1.68 16 7 C 0.50 9.99 7.67 87.66 0.67 10.67 16 8 O -0.58 -18.76 15.61 -3.04 -0.05 -18.81 16 9 C -0.04 -0.48 4.74 29.10 0.14 -0.34 16 10 C -0.24 -4.17 4.59 -20.14 -0.09 -4.26 16 11 C 0.05 0.99 11.96 85.24 1.02 2.01 16 12 N -0.34 -8.44 12.58 -57.02 -0.72 -9.15 16 13 N -0.38 -7.20 4.01 -369.55 -1.48 -8.68 16 14 C 0.09 0.91 11.47 127.77 1.47 2.38 16 15 C 0.07 1.04 11.40 83.54 0.95 1.99 16 16 C 0.06 1.91 5.45 85.56 0.47 2.38 16 17 C 0.45 21.41 7.47 87.66 0.66 22.06 16 18 O -0.60 -34.47 13.91 -3.07 -0.04 -34.51 16 19 N -0.59 -29.11 5.09 -306.98 -1.56 -30.67 16 20 C -0.33 -19.64 10.16 84.04 0.85 -18.79 16 21 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 22 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 23 N -0.93 -57.41 13.96 21.66 0.30 -57.11 16 24 Si 0.96 39.96 27.74 68.60 1.90 41.87 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 2.06 5.83 -2.39 -0.01 2.04 16 30 H 0.08 2.05 6.47 -2.38 -0.02 2.04 16 31 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 32 H 0.06 1.65 7.93 -2.39 -0.02 1.63 16 33 H 0.06 1.65 7.42 -2.39 -0.02 1.64 16 34 H 0.10 1.68 6.30 -2.39 -0.02 1.66 16 35 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.08 0.32 7.89 -2.39 -0.02 0.30 16 37 H 0.10 0.00 6.44 -2.39 -0.02 -0.02 16 38 H 0.13 0.72 8.11 -2.39 -0.02 0.70 16 39 H 0.13 0.49 7.40 -2.39 -0.02 0.48 16 40 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 41 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 46 H 0.11 3.25 7.93 -2.38 -0.02 3.23 16 47 H 0.39 15.91 5.76 -92.71 -0.53 15.38 16 48 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -95.22 397.56 2.11 -93.11 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.38 Total: 31.62 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 9.98 Total: 26.16 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -10.06 Total: -139.44 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -0.09 Total: -53.31 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.90 Total: 41.87 kcal Total: -95.22 2.11 -93.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698984147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.490 kcal (2) G-P(sol) polarization free energy of solvation -95.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds