Wall clock time and date at job start Tue Mar 31 2020 20:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48562 * 111.00344 * 2 1 4 4 C 1.54379 * 104.69842 * 159.09785 * 3 2 1 5 5 C 1.54257 * 105.06256 * 336.08765 * 4 3 2 6 6 C 1.48856 * 111.13147 * 115.32120 * 2 1 3 7 7 H 1.09004 * 110.49212 * 319.84370 * 6 2 1 8 8 C 1.50694 * 110.39370 * 82.21364 * 6 2 1 9 9 C 1.35366 * 126.38357 * 229.91930 * 8 6 2 10 10 C 1.41509 * 105.50117 * 179.89787 * 9 8 6 11 11 C 1.47711 * 126.51491 * 180.09713 * 10 9 8 12 12 O 1.21574 * 120.00383 * 0.29835 * 11 10 9 13 13 N 1.34777 * 119.99809 * 180.29288 * 11 10 9 14 14 C 1.46493 * 120.00163 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47380 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.47060 * 304.99874 * 15 14 13 17 17 O 1.42898 * 109.47195 * 64.99830 * 15 14 13 18 18 C 1.53004 * 109.47210 * 185.00074 * 15 14 13 19 19 N 1.46497 * 109.46903 * 179.97438 * 18 15 14 20 20 C 1.36940 * 119.99945 * 179.97438 * 19 18 15 21 21 H 1.08002 * 119.99994 * 359.97438 * 20 19 18 22 22 C 1.38817 * 120.00145 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99651 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00099 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46871 * 89.99954 * 24 22 20 26 26 H 1.48498 * 109.47165 * 210.00032 * 24 22 20 27 27 H 1.48499 * 109.46894 * 330.00477 * 24 22 20 28 28 N 1.31807 * 106.96478 * 0.36990 * 10 9 8 29 29 N 1.28471 * 110.07227 * 359.76884 * 28 10 9 30 30 H 0.97001 * 124.88462 * 179.97438 * 29 28 10 31 31 H 1.09007 * 109.47069 * 59.87301 * 1 2 3 32 32 H 1.08995 * 109.47381 * 179.87413 * 1 2 3 33 33 H 1.09000 * 109.47076 * 299.87817 * 1 2 3 34 34 H 1.09002 * 110.41176 * 40.25880 * 3 2 1 35 35 H 1.09002 * 110.41204 * 277.93787 * 3 2 1 36 36 H 1.08998 * 110.32365 * 94.98307 * 4 3 2 37 37 H 1.09002 * 110.32581 * 217.19029 * 4 3 2 38 38 H 1.08997 * 110.32124 * 118.89793 * 5 4 3 39 39 H 1.09004 * 110.32547 * 241.10341 * 5 4 3 40 40 H 1.07997 * 127.25033 * 0.02562 * 9 8 6 41 41 H 0.97009 * 119.99787 * 0.02562 * 13 11 10 42 42 H 1.09000 * 109.47003 * 299.99839 * 14 13 11 43 43 H 1.09005 * 109.47382 * 60.00095 * 14 13 11 44 44 H 0.96699 * 114.00131 * 60.00490 * 17 15 14 45 45 H 1.08993 * 109.46782 * 299.99428 * 18 15 14 46 46 H 1.08997 * 109.47280 * 59.99906 * 18 15 14 47 47 H 0.97002 * 120.00193 * 359.97438 * 19 18 15 48 48 H 0.97003 * 119.99833 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4441 1.2526 0.5328 5 6 3.4469 -0.0504 1.3584 6 6 2.0056 -0.5938 1.2551 7 1 1.4152 -0.2712 2.1127 8 6 2.0164 -2.0978 1.1616 9 6 1.5196 -2.9628 2.0767 10 6 1.7595 -4.2529 1.5470 11 6 1.3988 -5.5412 2.1732 12 8 0.8330 -5.5568 3.2491 13 7 1.6968 -6.6993 1.5517 14 6 1.3386 -7.9770 2.1723 15 6 1.7864 -9.1268 1.2677 16 1 1.3619 -8.9929 0.2727 17 8 3.2127 -9.1360 1.1798 18 6 1.3030 -10.4549 1.8538 19 7 1.7313 -11.5558 0.9873 20 6 1.4120 -12.8471 1.3124 21 1 0.8447 -13.0540 2.2078 22 6 1.8174 -13.8902 0.4911 23 7 2.5091 -13.6380 -0.5999 24 14 1.3823 -15.6518 0.9349 25 1 0.0763 -16.0079 0.3244 26 1 2.4343 -16.5657 0.4219 27 1 1.2904 -15.7819 2.4113 28 7 2.3714 -4.0865 0.3915 29 7 2.5288 -2.8341 0.1523 30 1 2.9547 -2.4698 -0.6394 31 1 -0.3633 0.5158 -0.8889 32 1 -0.3634 -1.0276 -0.0023 33 1 -0.3633 0.5119 0.8911 34 1 1.4099 2.0212 0.6602 35 1 2.0060 1.7924 -1.0118 36 1 4.1482 1.1772 -0.2959 37 1 3.6943 2.1031 1.1669 38 1 4.1523 -0.7653 0.9350 39 1 3.6984 0.1605 2.3979 40 1 1.0392 -2.7195 3.0129 41 1 2.1486 -6.6868 0.6933 42 1 1.8335 -8.0624 3.1397 43 1 0.2584 -8.0232 2.3114 44 1 3.6585 -9.2518 2.0300 45 1 1.7276 -10.5889 2.8487 46 1 0.2151 -10.4480 1.9209 47 1 2.2412 -11.3700 0.1832 48 1 2.7927 -14.3670 -1.1737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699047252.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:55 Heat of formation + Delta-G solvation = 3.666705 kcal Electronic energy + Delta-G solvation = -28213.678163 eV Core-core repulsion = 24112.364702 eV Total energy + Delta-G solvation = -4101.313461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.97808 -39.60384 -39.25726 -37.49941 -34.34519 -33.92957 -32.84350 -32.27738 -32.06817 -31.21697 -29.13190 -28.21499 -26.18306 -25.74196 -23.86281 -22.61258 -22.02129 -21.60953 -21.35519 -21.24181 -19.80739 -18.11112 -17.30404 -17.04745 -16.61929 -16.31822 -16.10586 -15.69478 -15.44858 -15.17152 -14.96736 -14.45907 -14.40336 -14.34593 -13.92938 -13.82093 -13.61710 -13.48340 -12.99553 -12.93631 -12.59882 -12.38400 -12.27334 -12.09913 -12.02293 -11.79488 -11.73313 -11.30063 -11.05357 -10.92629 -10.79651 -10.56586 -10.24580 -10.13686 -9.77213 -9.61963 -9.45463 -9.34347 -9.21280 -9.00908 -8.86748 -6.90166 -5.72840 -3.02350 1.42015 1.78543 2.59416 3.14281 3.32494 3.39192 3.46106 3.50990 3.52937 3.94900 4.00874 4.27255 4.31724 4.44967 4.58317 4.60697 4.77791 4.78641 4.86720 4.91456 4.91753 5.03381 5.11414 5.19630 5.28419 5.32273 5.34571 5.40189 5.45234 5.50875 5.52361 5.59146 5.67486 5.85326 6.01302 6.07239 6.14502 6.24469 6.29970 6.44888 6.55707 6.72235 6.73423 7.44573 7.71631 7.73049 8.02024 8.21658 8.45386 9.56975 10.14231 10.50213 11.49490 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032819 B = 0.001622 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.964860 B =17262.356801 C =17483.691854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.516 5.516 3 C 0.031 3.969 4 C -0.125 4.125 5 C -0.120 4.120 6 C 0.128 3.872 7 H 0.083 0.917 8 C 0.031 3.969 9 C -0.174 4.174 10 C -0.011 4.011 11 C 0.601 3.399 12 O -0.538 6.538 13 N -0.707 5.707 14 C 0.090 3.910 15 C 0.089 3.911 16 H 0.105 0.895 17 O -0.551 6.551 18 C 0.127 3.873 19 N -0.725 5.725 20 C -0.243 4.243 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 N -0.251 5.251 29 N -0.362 5.362 30 H 0.447 0.553 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.160 0.840 41 H 0.411 0.589 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.373 0.627 45 H 0.023 0.977 46 H 0.029 0.971 47 H 0.389 0.611 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 36.050 2.290 36.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.240 5.240 3 C -0.097 4.097 4 C -0.163 4.163 5 C -0.159 4.159 6 C 0.018 3.982 7 H 0.101 0.899 8 C -0.096 4.096 9 C -0.203 4.203 10 C -0.171 4.171 11 C 0.385 3.615 12 O -0.413 6.413 13 N -0.358 5.358 14 C -0.035 4.035 15 C 0.029 3.971 16 H 0.122 0.878 17 O -0.356 6.356 18 C -0.002 4.002 19 N -0.370 5.370 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 N -0.087 5.087 29 N -0.076 5.076 30 H 0.292 0.708 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.178 0.822 41 H 0.247 0.753 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.220 0.780 45 H 0.041 0.959 46 H 0.047 0.953 47 H 0.224 0.776 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.459 35.018 1.184 35.041 hybrid contribution -0.296 0.044 1.040 1.082 sum 0.163 35.062 2.224 35.133 Atomic orbital electron populations 1.22531 0.86999 1.02867 1.01186 1.65340 1.09128 1.15711 1.33815 1.23144 0.95216 0.89534 1.01780 1.22327 0.96629 0.97492 0.99902 1.22391 0.94921 0.97222 1.01322 1.21219 0.96998 0.86977 0.93001 0.89932 1.20913 1.03480 0.94030 0.91150 1.21476 1.06743 0.90155 1.01912 1.21887 1.05974 0.95177 0.94071 1.16885 0.78644 0.81863 0.84106 1.90794 1.42521 1.87021 1.21006 1.45787 1.60184 1.05059 1.24803 1.22162 1.01636 0.82430 0.97230 1.22388 0.81901 0.92955 0.99843 0.87768 1.86587 1.17557 1.95640 1.35798 1.21196 0.97505 0.87221 0.94284 1.42231 1.66101 1.01189 1.27524 1.19231 1.28718 0.83360 1.06139 0.91202 1.24761 1.00797 0.97988 0.97352 1.69684 1.42302 1.30999 1.14809 0.86178 0.77460 0.84855 0.77605 1.21717 1.21759 1.20766 1.73629 1.17912 0.99643 1.17559 1.43190 1.43005 1.02700 1.18710 0.70750 0.90894 0.90908 0.94778 0.93302 0.89610 0.90635 0.90804 0.90842 0.90208 0.82191 0.75286 0.90832 0.90216 0.77976 0.95890 0.95337 0.77629 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.43 60.06 0.57 0.63 16 2 N -0.52 -2.80 5.34 -231.47 -1.24 -4.03 16 3 C 0.03 0.12 6.48 -2.18 -0.01 0.10 16 4 C -0.13 -0.41 7.00 -25.35 -0.18 -0.59 16 5 C -0.12 -0.53 6.54 -25.35 -0.17 -0.69 16 6 C 0.13 0.72 2.76 -67.06 -0.19 0.54 16 7 H 0.08 0.44 7.91 -51.93 -0.41 0.03 16 8 C 0.03 0.25 5.80 -82.21 -0.48 -0.22 16 9 C -0.17 -1.83 10.72 -39.36 -0.42 -2.25 16 10 C -0.01 -0.13 7.13 -82.76 -0.59 -0.73 16 11 C 0.60 8.82 7.83 -12.39 -0.10 8.72 16 12 O -0.54 -9.31 16.93 5.30 0.09 -9.22 16 13 N -0.71 -9.62 5.50 -61.29 -0.34 -9.96 16 14 C 0.09 1.26 5.31 -4.04 -0.02 1.23 16 15 C 0.09 1.43 3.09 -26.73 -0.08 1.35 16 16 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 17 O -0.55 -9.22 13.03 -35.23 -0.46 -9.68 16 18 C 0.13 2.51 5.92 -4.04 -0.02 2.48 16 19 N -0.73 -18.67 5.49 -59.91 -0.33 -19.00 16 20 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 24 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 N -0.25 -2.87 11.92 33.42 0.40 -2.47 16 29 N -0.36 -3.09 6.83 33.50 0.23 -2.86 16 30 H 0.45 2.75 8.96 -190.44 -1.71 1.04 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 33 H 0.03 0.16 7.98 -51.93 -0.41 -0.26 16 34 H 0.05 0.17 7.97 -51.93 -0.41 -0.24 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.36 7.85 -51.93 -0.41 -0.05 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.41 5.37 8.20 -40.82 -0.33 5.04 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.37 5.24 9.05 45.56 0.41 5.65 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.39 10.74 7.54 -40.82 -0.31 10.44 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 401.63 15.07 6.05 6.05 Total: -1.00 -34.97 401.63 -10.03 -45.00 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -8.20 Total: 13.43 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.94 Total: 3.03 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.55 Total: -66.30 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.37 Total: -18.90 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.97 -10.03 -45.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699047252.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.668 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds