Wall clock time and date at job start Tue Mar 31 2020 20:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48562 * 111.00344 * 2 1 4 4 C 1.54379 * 104.69842 * 159.09785 * 3 2 1 5 5 C 1.54257 * 105.06256 * 336.08765 * 4 3 2 6 6 C 1.48856 * 111.13147 * 115.32120 * 2 1 3 7 7 H 1.09004 * 110.49212 * 319.84370 * 6 2 1 8 8 C 1.50694 * 110.39370 * 82.21364 * 6 2 1 9 9 C 1.35366 * 126.38357 * 229.91930 * 8 6 2 10 10 C 1.41509 * 105.50117 * 179.89787 * 9 8 6 11 11 C 1.47711 * 126.51491 * 180.09713 * 10 9 8 12 12 O 1.21574 * 120.00383 * 0.29835 * 11 10 9 13 13 N 1.34777 * 119.99809 * 180.29288 * 11 10 9 14 14 C 1.46493 * 120.00163 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47380 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.47060 * 304.99874 * 15 14 13 17 17 O 1.42898 * 109.47195 * 64.99830 * 15 14 13 18 18 C 1.53004 * 109.47210 * 185.00074 * 15 14 13 19 19 N 1.46497 * 109.46903 * 179.97438 * 18 15 14 20 20 C 1.36940 * 119.99945 * 179.97438 * 19 18 15 21 21 H 1.08002 * 119.99994 * 359.97438 * 20 19 18 22 22 C 1.38817 * 120.00145 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99651 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00099 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46871 * 89.99954 * 24 22 20 26 26 H 1.48498 * 109.47165 * 210.00032 * 24 22 20 27 27 H 1.48499 * 109.46894 * 330.00477 * 24 22 20 28 28 N 1.31807 * 106.96478 * 0.36990 * 10 9 8 29 29 N 1.28471 * 110.07227 * 359.76884 * 28 10 9 30 30 H 0.97001 * 124.88462 * 179.97438 * 29 28 10 31 31 H 1.09007 * 109.47069 * 59.87301 * 1 2 3 32 32 H 1.08995 * 109.47381 * 179.87413 * 1 2 3 33 33 H 1.09000 * 109.47076 * 299.87817 * 1 2 3 34 34 H 1.09002 * 110.41176 * 40.25880 * 3 2 1 35 35 H 1.09002 * 110.41204 * 277.93787 * 3 2 1 36 36 H 1.08998 * 110.32365 * 94.98307 * 4 3 2 37 37 H 1.09002 * 110.32581 * 217.19029 * 4 3 2 38 38 H 1.08997 * 110.32124 * 118.89793 * 5 4 3 39 39 H 1.09004 * 110.32547 * 241.10341 * 5 4 3 40 40 H 1.07997 * 127.25033 * 0.02562 * 9 8 6 41 41 H 0.97009 * 119.99787 * 0.02562 * 13 11 10 42 42 H 1.09000 * 109.47003 * 299.99839 * 14 13 11 43 43 H 1.09005 * 109.47382 * 60.00095 * 14 13 11 44 44 H 0.96699 * 114.00131 * 60.00490 * 17 15 14 45 45 H 1.08993 * 109.46782 * 299.99428 * 18 15 14 46 46 H 1.08997 * 109.47280 * 59.99906 * 18 15 14 47 47 H 0.97002 * 120.00193 * 359.97438 * 19 18 15 48 48 H 0.97003 * 119.99833 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4441 1.2526 0.5328 5 6 3.4469 -0.0504 1.3584 6 6 2.0056 -0.5938 1.2551 7 1 1.4152 -0.2712 2.1127 8 6 2.0164 -2.0978 1.1616 9 6 1.5196 -2.9628 2.0767 10 6 1.7595 -4.2529 1.5470 11 6 1.3988 -5.5412 2.1732 12 8 0.8330 -5.5568 3.2491 13 7 1.6968 -6.6993 1.5517 14 6 1.3386 -7.9770 2.1723 15 6 1.7864 -9.1268 1.2677 16 1 1.3619 -8.9929 0.2727 17 8 3.2127 -9.1360 1.1798 18 6 1.3030 -10.4549 1.8538 19 7 1.7313 -11.5558 0.9873 20 6 1.4120 -12.8471 1.3124 21 1 0.8447 -13.0540 2.2078 22 6 1.8174 -13.8902 0.4911 23 7 2.5091 -13.6380 -0.5999 24 14 1.3823 -15.6518 0.9349 25 1 0.0763 -16.0079 0.3244 26 1 2.4343 -16.5657 0.4219 27 1 1.2904 -15.7819 2.4113 28 7 2.3714 -4.0865 0.3915 29 7 2.5288 -2.8341 0.1523 30 1 2.9547 -2.4698 -0.6394 31 1 -0.3633 0.5158 -0.8889 32 1 -0.3634 -1.0276 -0.0023 33 1 -0.3633 0.5119 0.8911 34 1 1.4099 2.0212 0.6602 35 1 2.0060 1.7924 -1.0118 36 1 4.1482 1.1772 -0.2959 37 1 3.6943 2.1031 1.1669 38 1 4.1523 -0.7653 0.9350 39 1 3.6984 0.1605 2.3979 40 1 1.0392 -2.7195 3.0129 41 1 2.1486 -6.6868 0.6933 42 1 1.8335 -8.0624 3.1397 43 1 0.2584 -8.0232 2.3114 44 1 3.6585 -9.2518 2.0300 45 1 1.7276 -10.5889 2.8487 46 1 0.2151 -10.4480 1.9209 47 1 2.2412 -11.3700 0.1832 48 1 2.7927 -14.3670 -1.1737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699047252.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:53 Heat of formation + Delta-G solvation = -26.776742 kcal Electronic energy + Delta-G solvation = -28214.998290 eV Core-core repulsion = 24112.364702 eV Total energy + Delta-G solvation = -4102.633588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.77246 -40.63952 -39.79937 -38.88582 -36.06906 -35.34538 -33.31646 -33.17906 -32.89786 -32.80576 -30.60144 -28.80062 -27.32600 -26.55941 -25.28734 -23.91563 -22.89589 -22.73409 -22.08289 -21.77428 -20.87841 -19.22174 -18.75859 -18.26202 -17.62647 -17.25583 -16.93089 -16.68730 -16.47514 -16.32772 -16.07895 -15.61719 -15.43490 -15.35633 -14.95546 -14.75480 -14.68250 -14.53763 -14.16664 -14.11453 -13.83439 -13.32522 -13.24555 -12.94778 -12.76023 -12.74446 -12.55938 -12.39577 -12.15613 -12.08264 -11.99633 -11.95503 -11.79944 -11.45595 -11.45357 -10.99021 -10.89533 -10.52429 -10.11755 -10.05205 -9.63298 -9.00138 -7.93842 -5.23475 0.48139 1.02043 1.48197 1.50293 1.58776 1.80840 2.15906 2.31423 2.57039 2.89739 3.32241 3.38012 3.49039 3.53700 3.60374 3.64773 3.92042 4.03377 4.06914 4.12299 4.20571 4.29397 4.40398 4.44606 4.49514 4.51658 4.59630 4.62521 4.68575 4.74432 4.80360 4.93542 4.94664 4.99383 5.06607 5.13880 5.20725 5.24122 5.25830 5.31866 5.49163 5.74806 5.90106 6.05751 6.26999 6.39768 6.80127 6.85732 7.10065 7.34184 8.09748 8.33107 9.29419 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032819 B = 0.001622 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.964860 B =17262.356801 C =17483.691854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.525 5.525 3 C 0.031 3.969 4 C -0.120 4.120 5 C -0.119 4.119 6 C 0.128 3.872 7 H 0.090 0.910 8 C 0.052 3.948 9 C -0.190 4.190 10 C -0.035 4.035 11 C 0.601 3.399 12 O -0.570 6.570 13 N -0.701 5.701 14 C 0.101 3.899 15 C 0.108 3.892 16 H 0.099 0.901 17 O -0.563 6.563 18 C 0.123 3.877 19 N -0.740 5.740 20 C -0.249 4.249 21 H 0.078 0.922 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.976 3.024 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.269 1.269 28 N -0.263 5.263 29 N -0.349 5.349 30 H 0.458 0.542 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.165 0.835 41 H 0.415 0.585 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.385 0.615 45 H 0.033 0.967 46 H 0.035 0.965 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 37.817 2.815 37.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.249 5.249 3 C -0.096 4.096 4 C -0.158 4.158 5 C -0.157 4.157 6 C 0.018 3.982 7 H 0.108 0.892 8 C -0.076 4.076 9 C -0.219 4.219 10 C -0.194 4.194 11 C 0.386 3.614 12 O -0.448 6.448 13 N -0.352 5.352 14 C -0.023 4.023 15 C 0.048 3.952 16 H 0.117 0.883 17 O -0.370 6.370 18 C -0.004 4.004 19 N -0.383 5.383 20 C -0.381 4.381 21 H 0.095 0.905 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.805 3.195 25 H -0.214 1.214 26 H -0.222 1.222 27 H -0.193 1.193 28 N -0.101 5.101 29 N -0.065 5.065 30 H 0.306 0.694 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.182 0.818 41 H 0.251 0.749 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.234 0.766 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.466 36.814 1.728 36.857 hybrid contribution -0.295 -0.371 0.871 0.991 sum 0.171 36.443 2.599 36.536 Atomic orbital electron populations 1.22506 0.87096 1.01944 1.01935 1.65318 1.09139 1.16936 1.33510 1.23198 0.95502 0.88563 1.02357 1.22321 0.96304 0.97244 0.99972 1.22400 0.93626 0.97619 1.02089 1.21310 0.98224 0.85106 0.93546 0.89231 1.21213 1.01386 0.95129 0.89877 1.21631 1.07668 0.89786 1.02804 1.21716 1.07698 0.94945 0.95036 1.17133 0.77976 0.82555 0.83712 1.90765 1.44093 1.87549 1.22372 1.45712 1.59908 1.04775 1.24800 1.21963 1.01714 0.81841 0.96784 1.22100 0.81639 0.91841 0.99660 0.88339 1.86565 1.17804 1.95587 1.37027 1.21393 0.97811 0.87344 0.93902 1.42410 1.66064 1.01895 1.27908 1.19672 1.27727 0.84716 1.05972 0.90456 1.25614 1.01462 1.02183 0.97585 1.69847 1.44067 1.31878 1.16082 0.85104 0.76840 0.79672 0.77901 1.21363 1.22201 1.19335 1.73566 1.18242 1.01010 1.17271 1.43246 1.42131 1.02032 1.19056 0.69410 0.90151 0.92632 0.94072 0.92632 0.89105 0.90389 0.89549 0.91386 0.89403 0.81778 0.74885 0.90247 0.90002 0.76613 0.94870 0.94665 0.79123 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.43 127.69 1.20 1.33 16 2 N -0.52 -4.75 5.34 -886.25 -4.73 -9.48 16 3 C 0.03 0.17 6.48 86.45 0.56 0.73 16 4 C -0.12 -0.49 7.00 31.49 0.22 -0.27 16 5 C -0.12 -0.80 6.54 31.49 0.21 -0.59 16 6 C 0.13 1.23 2.76 44.26 0.12 1.35 16 7 H 0.09 0.77 7.91 -2.39 -0.02 0.76 16 8 C 0.05 0.79 5.80 41.40 0.24 1.03 16 9 C -0.19 -3.93 10.72 22.41 0.24 -3.69 16 10 C -0.03 -0.88 7.13 42.46 0.30 -0.58 16 11 C 0.60 17.66 7.83 86.75 0.68 18.33 16 12 O -0.57 -19.84 16.93 -3.95 -0.07 -19.91 16 13 N -0.70 -18.86 5.50 -466.10 -2.56 -21.43 16 14 C 0.10 2.76 5.31 86.38 0.46 3.22 16 15 C 0.11 3.40 3.09 30.60 0.09 3.49 16 16 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 17 O -0.56 -18.53 13.03 -148.98 -1.94 -20.47 16 18 C 0.12 4.77 5.92 86.38 0.51 5.28 16 19 N -0.74 -38.09 5.49 -343.46 -1.89 -39.97 16 20 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 23 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 24 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 28 N -0.26 -5.90 11.92 -48.17 -0.57 -6.47 16 29 N -0.35 -5.60 6.83 -47.93 -0.33 -5.93 16 30 H 0.46 5.03 8.96 -219.99 -1.97 3.05 16 31 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.05 0.71 8.06 -2.39 -0.02 0.69 16 33 H 0.04 0.32 7.98 -2.39 -0.02 0.30 16 34 H 0.06 0.24 7.97 -2.39 -0.02 0.22 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.07 0.54 7.85 -2.39 -0.02 0.52 16 39 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 41 H 0.41 10.70 8.20 -92.70 -0.76 9.94 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.38 10.48 9.05 -74.06 -0.67 9.81 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.38 21.06 7.54 -92.71 -0.70 20.36 16 48 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -74.44 401.63 -6.72 -81.16 By element: Atomic # 1 Polarization: 44.71 SS G_CDS: -3.09 Total: 41.62 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.15 Total: 12.38 kcal Atomic # 7 Polarization: -133.75 SS G_CDS: -9.80 Total: -143.55 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -2.01 Total: -40.38 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.44 -6.72 -81.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699047252.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.381 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds