Wall clock time and date at job start Tue Mar 31 2020 20:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48527 * 111.00316 * 2 1 4 4 C 1.54930 * 103.22795 * 159.72299 * 3 2 1 5 5 C 1.54591 * 102.92424 * 322.58520 * 4 3 2 6 6 C 1.47903 * 111.00105 * 117.39788 * 2 1 3 7 7 H 1.09001 * 110.08000 * 333.60021 * 6 2 1 8 8 C 1.50703 * 109.91459 * 94.80065 * 6 2 1 9 9 C 1.35368 * 126.38357 * 232.58648 * 8 6 2 10 10 C 1.41501 * 105.50220 * 179.97438 * 9 8 6 11 11 C 1.47714 * 126.51738 * 180.02562 * 10 9 8 12 12 O 1.21568 * 119.99790 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99937 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00041 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47107 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.47266 * 60.00208 * 15 14 13 17 17 O 1.42900 * 109.47208 * 299.99986 * 15 14 13 18 18 C 1.52999 * 109.47088 * 180.02562 * 15 14 13 19 19 N 1.46495 * 109.47350 * 185.00051 * 18 15 14 20 20 C 1.36940 * 120.00250 * 179.97438 * 19 18 15 21 21 H 1.07995 * 119.99827 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99765 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00615 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99852 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47005 * 60.00355 * 24 22 20 26 26 H 1.48499 * 109.47253 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47302 * 300.00221 * 24 22 20 28 28 N 1.31808 * 106.96597 * 359.78273 * 10 9 8 29 29 N 1.28472 * 110.07247 * 0.37065 * 28 10 9 30 30 H 0.97001 * 124.88896 * 179.88964 * 29 28 10 31 31 H 1.09007 * 109.46897 * 302.60402 * 1 2 3 32 32 H 1.08995 * 109.47401 * 62.60031 * 1 2 3 33 33 H 1.08997 * 109.47207 * 182.60344 * 1 2 3 34 34 H 1.09001 * 110.67038 * 41.28655 * 3 2 1 35 35 H 1.09006 * 110.80947 * 278.22800 * 3 2 1 36 36 H 1.09004 * 110.72679 * 204.22425 * 4 3 2 37 37 H 1.09001 * 110.88143 * 81.01972 * 4 3 2 38 38 H 1.08999 * 110.30983 * 263.04158 * 5 4 3 39 39 H 1.09001 * 110.31112 * 140.87169 * 5 4 3 40 40 H 1.08001 * 127.24745 * 359.97438 * 9 8 6 41 41 H 0.97003 * 119.99924 * 359.97438 * 13 11 10 42 42 H 1.08993 * 109.47235 * 299.99633 * 14 13 11 43 43 H 1.08994 * 109.47268 * 60.00173 * 14 13 11 44 44 H 0.96704 * 113.99856 * 300.00044 * 17 15 14 45 45 H 1.09003 * 109.47023 * 304.99871 * 18 15 14 46 46 H 1.09001 * 109.47054 * 65.00011 * 18 15 14 47 47 H 0.97001 * 120.00054 * 359.97438 * 19 18 15 48 48 H 0.96999 * 119.99846 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2105 0.5227 5 6 3.2983 0.1052 1.5930 6 6 1.9990 -0.6354 1.2259 7 1 1.2771 -0.5433 2.0373 8 6 2.2937 -2.0899 0.9639 9 6 1.8509 -3.1425 1.6909 10 6 2.3865 -4.2901 1.0596 11 6 2.1912 -5.6939 1.4757 12 8 1.5115 -5.9500 2.4505 13 7 2.7665 -6.6908 0.7745 14 6 2.5733 -8.0831 1.1874 15 6 3.3263 -9.0084 0.2295 16 1 4.3890 -8.7671 0.2515 17 8 2.8250 -8.8309 -1.0969 18 6 3.1240 -10.4624 0.6603 19 7 3.9398 -11.3397 -0.1829 20 6 3.9216 -12.6940 0.0189 21 1 3.3056 -13.1154 0.7995 22 6 4.6942 -13.5252 -0.7804 23 7 5.4447 -13.0117 -1.7321 24 14 4.6700 -15.3726 -0.5047 25 1 3.2874 -15.8824 -0.6881 26 1 5.5744 -16.0308 -1.4815 27 1 5.1296 -15.6733 0.8750 28 7 3.0885 -3.8686 0.0267 29 7 3.0482 -2.5863 -0.0400 30 1 3.4924 -2.0517 -0.7167 31 1 -0.3633 0.5538 0.8658 32 1 -0.3634 0.4729 -0.9123 33 1 -0.3633 -1.0266 0.0467 34 1 1.4238 2.0205 0.6729 35 1 2.0040 1.8004 -1.0085 36 1 3.8124 2.1350 0.9715 37 1 4.1140 0.8847 -0.2772 38 1 3.2137 0.5484 2.5852 39 1 4.1470 -0.5776 1.5539 40 1 1.2214 -3.1127 2.5679 41 1 3.3085 -6.4865 -0.0036 42 1 2.9553 -8.2183 2.1992 43 1 1.5107 -8.3246 1.1650 44 1 1.8830 -9.0284 -1.1909 45 1 3.4241 -10.5778 1.7019 46 1 2.0728 -10.7302 0.5532 47 1 4.4928 -10.9612 -0.8842 48 1 5.9842 -13.5927 -2.2909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699047254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:08 Heat of formation + Delta-G solvation = 4.048518 kcal Electronic energy + Delta-G solvation = -28239.311405 eV Core-core repulsion = 24138.014501 eV Total energy + Delta-G solvation = -4101.296905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.95497 -39.62766 -39.26525 -37.49578 -34.32807 -33.93345 -32.86018 -32.21104 -32.05454 -31.22111 -29.11898 -28.24684 -26.17009 -25.72985 -23.83418 -22.53341 -21.98166 -21.80070 -21.35233 -21.20437 -19.79687 -18.09722 -17.29278 -17.04653 -16.66422 -16.31092 -16.07051 -15.68121 -15.45865 -15.13969 -14.96908 -14.45658 -14.34463 -14.27853 -13.95891 -13.84582 -13.63030 -13.47679 -13.06378 -12.93346 -12.60921 -12.31315 -12.26844 -12.06786 -12.03125 -11.79062 -11.70181 -11.38658 -11.04845 -10.93179 -10.77452 -10.56054 -10.23050 -10.17178 -9.76775 -9.59341 -9.45703 -9.30008 -9.17263 -8.99457 -8.86071 -6.90119 -5.72526 -3.02124 1.44690 1.81851 2.61780 3.15824 3.33959 3.40642 3.46960 3.50982 3.52332 3.95003 3.98521 4.26110 4.30483 4.42735 4.59147 4.64616 4.78450 4.79634 4.84901 4.90185 4.92968 5.07193 5.10621 5.20155 5.26751 5.31958 5.34888 5.39198 5.45173 5.50735 5.54894 5.59431 5.69268 5.86331 6.01776 6.10252 6.18333 6.24479 6.32225 6.46182 6.56320 6.73042 6.75185 7.46820 7.71408 7.75570 8.01150 8.23472 8.45618 9.57068 10.14166 10.49900 11.49769 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.001634 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.012714 B =17132.072952 C =17423.862537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.033 3.967 4 C -0.126 4.126 5 C -0.129 4.129 6 C 0.132 3.868 7 H 0.083 0.917 8 C 0.034 3.966 9 C -0.176 4.176 10 C -0.011 4.011 11 C 0.601 3.399 12 O -0.538 6.538 13 N -0.707 5.707 14 C 0.089 3.911 15 C 0.089 3.911 16 H 0.105 0.895 17 O -0.552 6.552 18 C 0.127 3.873 19 N -0.726 5.726 20 C -0.244 4.244 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 N -0.252 5.252 29 N -0.362 5.362 30 H 0.446 0.554 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.160 0.840 41 H 0.412 0.588 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.373 0.627 45 H 0.029 0.971 46 H 0.024 0.976 47 H 0.388 0.612 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 35.076 5.078 36.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.164 4.164 5 C -0.167 4.167 6 C 0.022 3.978 7 H 0.101 0.899 8 C -0.093 4.093 9 C -0.205 4.205 10 C -0.171 4.171 11 C 0.385 3.615 12 O -0.414 6.414 13 N -0.358 5.358 14 C -0.035 4.035 15 C 0.029 3.971 16 H 0.123 0.877 17 O -0.356 6.356 18 C -0.001 4.001 19 N -0.370 5.370 20 C -0.375 4.375 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 N -0.089 5.089 29 N -0.076 5.076 30 H 0.291 0.709 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.178 0.822 41 H 0.248 0.752 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.220 0.780 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.223 0.777 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.690 34.151 4.403 35.077 hybrid contribution -0.741 -0.037 0.670 1.000 sum -7.430 34.114 5.073 35.280 Atomic orbital electron populations 1.22536 0.86777 1.02729 1.01246 1.64553 1.09116 1.15146 1.35829 1.23281 0.95005 0.89380 1.01737 1.22535 0.96600 0.98804 0.98466 1.22529 0.96730 0.97690 0.99783 1.20882 0.97261 0.87376 0.92300 0.89884 1.21008 0.99754 0.95613 0.92942 1.21465 1.06015 0.89414 1.03596 1.21874 1.03556 0.95222 0.96451 1.16889 0.79475 0.82548 0.82579 1.90791 1.39921 1.83625 1.27050 1.45769 1.52188 1.05928 1.31947 1.22146 1.01531 0.80155 0.99663 1.22402 0.98575 0.94260 0.81858 0.87688 1.86591 1.29626 1.91008 1.28417 1.21204 0.95507 0.88259 0.95173 1.42231 1.52414 1.03005 1.39393 1.19184 1.21766 0.82951 1.13600 0.91242 1.24759 0.99701 0.98052 0.98362 1.69671 1.31608 1.34158 1.22420 0.86251 0.77252 0.85389 0.77163 1.21265 1.21678 1.21261 1.73623 1.20812 0.94142 1.20274 1.43159 1.37217 1.03947 1.23257 0.70899 0.94881 0.90875 0.90870 0.93181 0.89504 0.90443 0.90580 0.90261 0.90496 0.82249 0.75220 0.90211 0.90867 0.78032 0.95323 0.95877 0.77715 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.40 60.06 0.56 0.64 16 2 N -0.52 -2.83 5.17 -232.17 -1.20 -4.03 16 3 C 0.03 0.12 6.56 -1.91 -0.01 0.11 16 4 C -0.13 -0.41 7.06 -24.88 -0.18 -0.58 16 5 C -0.13 -0.55 6.56 -25.38 -0.17 -0.72 16 6 C 0.13 0.75 2.95 -67.79 -0.20 0.55 16 7 H 0.08 0.44 7.73 -51.93 -0.40 0.04 16 8 C 0.03 0.28 5.86 -82.20 -0.48 -0.20 16 9 C -0.18 -1.88 10.72 -39.36 -0.42 -2.30 16 10 C -0.01 -0.14 7.13 -82.76 -0.59 -0.73 16 11 C 0.60 8.89 7.82 -12.39 -0.10 8.80 16 12 O -0.54 -9.38 16.93 5.31 0.09 -9.29 16 13 N -0.71 -9.70 5.44 -61.30 -0.33 -10.03 16 14 C 0.09 1.26 5.34 -4.04 -0.02 1.24 16 15 C 0.09 1.44 3.09 -26.73 -0.08 1.35 16 16 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 17 O -0.55 -9.18 13.03 -35.23 -0.46 -9.64 16 18 C 0.13 2.53 5.90 -4.04 -0.02 2.50 16 19 N -0.73 -18.72 5.55 -59.91 -0.33 -19.05 16 20 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 24 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 N -0.25 -2.92 11.92 33.42 0.40 -2.52 16 29 N -0.36 -3.13 6.83 33.50 0.23 -2.90 16 30 H 0.45 2.76 8.96 -190.44 -1.71 1.05 16 31 H 0.03 0.14 8.01 -51.93 -0.42 -0.28 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.17 7.96 -51.93 -0.41 -0.25 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.39 7.68 -51.93 -0.40 -0.01 16 40 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.41 5.44 8.07 -40.82 -0.33 5.11 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.37 5.17 9.05 45.56 0.41 5.58 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.39 10.73 7.67 -40.82 -0.31 10.42 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -35.13 401.56 -10.00 -45.12 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -8.19 Total: 13.49 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.96 Total: 3.09 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -0.51 Total: -66.54 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.37 Total: -18.93 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.13 -10.00 -45.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699047254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.173 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds