Wall clock time and date at job start Tue Mar 31 2020 20:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48527 * 111.00316 * 2 1 4 4 C 1.54930 * 103.22795 * 159.72299 * 3 2 1 5 5 C 1.54591 * 102.92424 * 322.58520 * 4 3 2 6 6 C 1.47903 * 111.00105 * 117.39788 * 2 1 3 7 7 H 1.09001 * 110.08000 * 333.60021 * 6 2 1 8 8 C 1.50703 * 109.91459 * 94.80065 * 6 2 1 9 9 C 1.35368 * 126.38357 * 232.58648 * 8 6 2 10 10 C 1.41501 * 105.50220 * 179.97438 * 9 8 6 11 11 C 1.47714 * 126.51738 * 180.02562 * 10 9 8 12 12 O 1.21568 * 119.99790 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99937 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00041 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47107 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.47266 * 60.00208 * 15 14 13 17 17 O 1.42900 * 109.47208 * 299.99986 * 15 14 13 18 18 C 1.52999 * 109.47088 * 180.02562 * 15 14 13 19 19 N 1.46495 * 109.47350 * 185.00051 * 18 15 14 20 20 C 1.36940 * 120.00250 * 179.97438 * 19 18 15 21 21 H 1.07995 * 119.99827 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99765 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00615 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99852 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47005 * 60.00355 * 24 22 20 26 26 H 1.48499 * 109.47253 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47302 * 300.00221 * 24 22 20 28 28 N 1.31808 * 106.96597 * 359.78273 * 10 9 8 29 29 N 1.28472 * 110.07247 * 0.37065 * 28 10 9 30 30 H 0.97001 * 124.88896 * 179.88964 * 29 28 10 31 31 H 1.09007 * 109.46897 * 302.60402 * 1 2 3 32 32 H 1.08995 * 109.47401 * 62.60031 * 1 2 3 33 33 H 1.08997 * 109.47207 * 182.60344 * 1 2 3 34 34 H 1.09001 * 110.67038 * 41.28655 * 3 2 1 35 35 H 1.09006 * 110.80947 * 278.22800 * 3 2 1 36 36 H 1.09004 * 110.72679 * 204.22425 * 4 3 2 37 37 H 1.09001 * 110.88143 * 81.01972 * 4 3 2 38 38 H 1.08999 * 110.30983 * 263.04158 * 5 4 3 39 39 H 1.09001 * 110.31112 * 140.87169 * 5 4 3 40 40 H 1.08001 * 127.24745 * 359.97438 * 9 8 6 41 41 H 0.97003 * 119.99924 * 359.97438 * 13 11 10 42 42 H 1.08993 * 109.47235 * 299.99633 * 14 13 11 43 43 H 1.08994 * 109.47268 * 60.00173 * 14 13 11 44 44 H 0.96704 * 113.99856 * 300.00044 * 17 15 14 45 45 H 1.09003 * 109.47023 * 304.99871 * 18 15 14 46 46 H 1.09001 * 109.47054 * 65.00011 * 18 15 14 47 47 H 0.97001 * 120.00054 * 359.97438 * 19 18 15 48 48 H 0.96999 * 119.99846 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2105 0.5227 5 6 3.2983 0.1052 1.5930 6 6 1.9990 -0.6354 1.2259 7 1 1.2771 -0.5433 2.0373 8 6 2.2937 -2.0899 0.9639 9 6 1.8509 -3.1425 1.6909 10 6 2.3865 -4.2901 1.0596 11 6 2.1912 -5.6939 1.4757 12 8 1.5115 -5.9500 2.4505 13 7 2.7665 -6.6908 0.7745 14 6 2.5733 -8.0831 1.1874 15 6 3.3263 -9.0084 0.2295 16 1 4.3890 -8.7671 0.2515 17 8 2.8250 -8.8309 -1.0969 18 6 3.1240 -10.4624 0.6603 19 7 3.9398 -11.3397 -0.1829 20 6 3.9216 -12.6940 0.0189 21 1 3.3056 -13.1154 0.7995 22 6 4.6942 -13.5252 -0.7804 23 7 5.4447 -13.0117 -1.7321 24 14 4.6700 -15.3726 -0.5047 25 1 3.2874 -15.8824 -0.6881 26 1 5.5744 -16.0308 -1.4815 27 1 5.1296 -15.6733 0.8750 28 7 3.0885 -3.8686 0.0267 29 7 3.0482 -2.5863 -0.0400 30 1 3.4924 -2.0517 -0.7167 31 1 -0.3633 0.5538 0.8658 32 1 -0.3634 0.4729 -0.9123 33 1 -0.3633 -1.0266 0.0467 34 1 1.4238 2.0205 0.6729 35 1 2.0040 1.8004 -1.0085 36 1 3.8124 2.1350 0.9715 37 1 4.1140 0.8847 -0.2772 38 1 3.2137 0.5484 2.5852 39 1 4.1470 -0.5776 1.5539 40 1 1.2214 -3.1127 2.5679 41 1 3.3085 -6.4865 -0.0036 42 1 2.9553 -8.2183 2.1992 43 1 1.5107 -8.3246 1.1650 44 1 1.8830 -9.0284 -1.1909 45 1 3.4241 -10.5778 1.7019 46 1 2.0728 -10.7302 0.5532 47 1 4.4928 -10.9612 -0.8842 48 1 5.9842 -13.5927 -2.2909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699047254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:07 Heat of formation + Delta-G solvation = -26.423541 kcal Electronic energy + Delta-G solvation = -28240.632773 eV Core-core repulsion = 24138.014501 eV Total energy + Delta-G solvation = -4102.618272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.75656 -40.64202 -39.83300 -38.88377 -36.08270 -35.32663 -33.33804 -33.18228 -32.85765 -32.76492 -30.59390 -28.83106 -27.32739 -26.53016 -25.27484 -23.88757 -22.84706 -22.70826 -22.14265 -21.84931 -20.87051 -19.22034 -18.74049 -18.25779 -17.63155 -17.25715 -16.95860 -16.66032 -16.47376 -16.32280 -16.08303 -15.61225 -15.43064 -15.30772 -14.95534 -14.70299 -14.61908 -14.56772 -14.18611 -14.15093 -13.82721 -13.39594 -13.24670 -12.95440 -12.70781 -12.69271 -12.50717 -12.39196 -12.19638 -12.05103 -11.99119 -11.93991 -11.79927 -11.55567 -11.44572 -10.98018 -10.90114 -10.51050 -10.11020 -10.02905 -9.57455 -9.00347 -7.93709 -5.23517 0.49423 1.04904 1.48169 1.51699 1.57810 1.82054 2.17017 2.32438 2.57285 2.91403 3.33250 3.38209 3.50847 3.55699 3.59489 3.62675 3.88431 4.01628 4.06597 4.14995 4.21331 4.30533 4.41507 4.45354 4.50776 4.54302 4.59348 4.62625 4.70861 4.77952 4.80665 4.92517 4.94969 5.01241 5.05547 5.14406 5.21525 5.24204 5.25828 5.32030 5.48929 5.79588 5.93388 6.07854 6.26972 6.40819 6.79785 6.87318 7.10902 7.34014 8.09349 8.32586 9.29357 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.001634 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.012714 B =17132.072952 C =17423.862537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.034 3.966 4 C -0.122 4.122 5 C -0.126 4.126 6 C 0.132 3.868 7 H 0.090 0.910 8 C 0.054 3.946 9 C -0.193 4.193 10 C -0.035 4.035 11 C 0.601 3.399 12 O -0.570 6.570 13 N -0.701 5.701 14 C 0.101 3.899 15 C 0.108 3.892 16 H 0.098 0.902 17 O -0.563 6.563 18 C 0.124 3.876 19 N -0.740 5.740 20 C -0.250 4.250 21 H 0.078 0.922 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.977 3.023 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.277 1.277 28 N -0.265 5.265 29 N -0.349 5.349 30 H 0.458 0.542 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.164 0.836 41 H 0.415 0.585 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.385 0.615 45 H 0.036 0.964 46 H 0.033 0.967 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 36.735 5.586 38.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.093 4.093 4 C -0.160 4.160 5 C -0.165 4.165 6 C 0.022 3.978 7 H 0.108 0.892 8 C -0.074 4.074 9 C -0.222 4.222 10 C -0.194 4.194 11 C 0.386 3.614 12 O -0.448 6.448 13 N -0.352 5.352 14 C -0.023 4.023 15 C 0.048 3.952 16 H 0.116 0.884 17 O -0.370 6.370 18 C -0.004 4.004 19 N -0.383 5.383 20 C -0.382 4.382 21 H 0.095 0.905 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.805 3.195 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.203 1.203 28 N -0.102 5.102 29 N -0.064 5.064 30 H 0.305 0.695 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.181 0.819 41 H 0.252 0.748 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.234 0.766 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.214 35.835 4.922 36.884 hybrid contribution -0.628 -0.421 0.506 0.909 sum -7.842 35.414 5.428 36.676 Atomic orbital electron populations 1.22521 0.86711 1.01982 1.02018 1.64512 1.09302 1.16385 1.35573 1.23330 0.95228 0.88402 1.02308 1.22539 0.96325 0.98977 0.98124 1.22523 0.95428 0.97724 1.00806 1.20969 0.98349 0.85744 0.92724 0.89247 1.21341 0.97904 0.96578 0.91541 1.21625 1.06788 0.89435 1.04355 1.21707 1.05275 0.94684 0.97744 1.17138 0.78804 0.83391 0.82046 1.90762 1.41402 1.84260 1.28405 1.45693 1.51964 1.05634 1.31875 1.21950 1.01451 0.79999 0.98942 1.22099 0.98561 0.92456 0.82101 0.88392 1.86569 1.30863 1.90936 1.28627 1.21401 0.94910 0.89526 0.94539 1.42417 1.53073 1.02977 1.39836 1.19635 1.21001 0.84407 1.13165 0.90453 1.25619 0.99968 1.02674 0.98576 1.69838 1.32871 1.35502 1.23685 0.85171 0.77343 0.79862 0.77105 1.20317 1.22167 1.20295 1.73559 1.21066 0.95463 1.20147 1.43216 1.36588 1.03271 1.23350 0.69519 0.93915 0.90302 0.92388 0.92422 0.89027 0.89078 0.90581 0.89129 0.91266 0.81875 0.74842 0.90014 0.90274 0.76608 0.94607 0.94893 0.79207 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.40 127.69 1.20 1.34 16 2 N -0.53 -4.80 5.17 -888.46 -4.59 -9.39 16 3 C 0.03 0.17 6.56 86.65 0.57 0.74 16 4 C -0.12 -0.49 7.06 31.80 0.22 -0.26 16 5 C -0.13 -0.81 6.56 31.47 0.21 -0.60 16 6 C 0.13 1.27 2.95 44.31 0.13 1.40 16 7 H 0.09 0.78 7.73 -2.39 -0.02 0.76 16 8 C 0.05 0.84 5.86 41.40 0.24 1.08 16 9 C -0.19 -4.07 10.72 22.41 0.24 -3.83 16 10 C -0.03 -0.89 7.13 42.46 0.30 -0.59 16 11 C 0.60 17.84 7.82 86.75 0.68 18.52 16 12 O -0.57 -20.03 16.93 -3.93 -0.07 -20.10 16 13 N -0.70 -19.03 5.44 -466.11 -2.54 -21.57 16 14 C 0.10 2.77 5.34 86.38 0.46 3.24 16 15 C 0.11 3.42 3.09 30.60 0.09 3.51 16 16 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 17 O -0.56 -18.42 13.03 -148.98 -1.94 -20.36 16 18 C 0.12 4.82 5.90 86.38 0.51 5.33 16 19 N -0.74 -38.22 5.55 -343.46 -1.91 -40.12 16 20 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 23 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 24 Si 0.98 46.75 29.55 68.60 2.03 48.77 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 28 N -0.26 -6.01 11.92 -48.17 -0.57 -6.59 16 29 N -0.35 -5.67 6.83 -47.92 -0.33 -6.00 16 30 H 0.46 5.03 8.96 -219.99 -1.97 3.05 16 31 H 0.04 0.28 8.01 -2.38 -0.02 0.27 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 35 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.07 0.57 7.68 -2.39 -0.02 0.55 16 40 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.41 10.86 8.07 -92.71 -0.75 10.11 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.39 10.33 9.05 -74.05 -0.67 9.66 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.38 21.06 7.67 -92.71 -0.71 20.35 16 48 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -74.85 401.56 -6.55 -81.40 By element: Atomic # 1 Polarization: 44.84 SS G_CDS: -3.09 Total: 41.75 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 6.17 Total: 12.52 kcal Atomic # 7 Polarization: -134.34 SS G_CDS: -9.65 Total: -143.99 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -2.01 Total: -40.46 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -74.85 -6.55 -81.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699047254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.981 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds