Wall clock time and date at job start Tue Mar 31 2020 20:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47421 * 2 1 4 4 C 1.46502 * 119.99851 * 270.00132 * 3 2 1 5 5 C 1.53001 * 109.47022 * 269.99492 * 4 3 2 6 6 N 1.46899 * 109.47210 * 179.97438 * 5 4 3 7 7 C 1.46897 * 111.00215 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47230 * 179.97438 * 7 6 5 9 9 O 1.21295 * 119.99764 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99758 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99490 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00408 * 0.02562 * 11 10 8 13 13 C 1.38954 * 119.99545 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00209 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99664 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47000 * 60.00033 * 15 13 11 17 17 H 1.48507 * 109.46985 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47218 * 299.99997 * 15 13 11 19 19 C 1.34775 * 120.00021 * 89.99693 * 3 2 1 20 20 O 1.21281 * 119.99976 * 180.02562 * 19 3 2 21 21 C 1.50702 * 120.00362 * 0.02562 * 19 3 2 22 22 N 1.46502 * 109.47370 * 180.02562 * 21 19 3 23 23 C 1.34938 * 126.03706 * 125.31276 * 22 21 19 24 24 C 1.35319 * 107.74424 * 180.14574 * 23 22 21 25 25 C 1.50703 * 126.04136 * 179.87287 * 24 23 22 26 26 C 1.39874 * 107.92067 * 359.60416 * 24 23 22 27 27 N 1.30837 * 108.19824 * 0.24495 * 26 24 23 28 28 H 1.08998 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46950 * 300.00195 * 1 2 3 30 30 H 1.08999 * 109.46750 * 60.00284 * 1 2 3 31 31 H 1.09002 * 109.46950 * 239.99805 * 2 1 3 32 32 H 1.09006 * 109.46856 * 120.00068 * 2 1 3 33 33 H 1.09001 * 109.47027 * 29.99822 * 4 3 2 34 34 H 1.09007 * 109.46707 * 149.99690 * 4 3 2 35 35 H 1.09002 * 109.47024 * 300.00301 * 5 4 3 36 36 H 1.08997 * 109.46683 * 60.00424 * 5 4 3 37 37 H 1.00901 * 110.99640 * 56.04422 * 6 5 4 38 38 H 1.08997 * 109.46938 * 300.00251 * 7 6 5 39 39 H 1.09001 * 109.46937 * 60.00152 * 7 6 5 40 40 H 0.97002 * 120.00116 * 0.02562 * 10 8 7 41 41 H 0.96999 * 120.00212 * 179.97438 * 14 13 11 42 42 H 1.09000 * 109.46660 * 59.99666 * 21 19 3 43 43 H 1.09004 * 109.47018 * 299.99933 * 21 19 3 44 44 H 1.08003 * 126.13278 * 359.97438 * 23 22 21 45 45 H 1.09002 * 109.47152 * 269.71139 * 25 24 23 46 46 H 1.09001 * 109.46980 * 149.71239 * 25 24 23 47 47 H 1.09004 * 109.47113 * 29.71220 * 25 24 23 48 48 H 1.07991 * 125.90010 * 180.21698 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7104 6 7 3.9523 2.5232 -2.9829 7 6 5.3328 2.3138 -3.4391 8 6 5.5457 3.0363 -4.7444 9 8 4.6368 3.6643 -5.2451 10 7 6.7462 2.9853 -5.3548 11 6 6.9399 3.6431 -6.5420 12 1 6.1307 4.2023 -6.9879 13 6 8.1775 3.5901 -7.1716 14 7 9.1620 2.9093 -6.6294 15 14 8.4413 4.4857 -8.7896 16 1 8.1986 5.9380 -8.5967 17 1 9.8371 4.2745 -9.2504 18 1 7.4980 3.9571 -9.8074 19 6 2.2430 2.0165 1.1672 20 8 2.6469 3.1601 1.1672 21 6 1.9923 1.3060 2.4723 22 7 2.3090 2.2038 3.5859 23 6 1.4814 2.5344 4.5991 24 6 2.1469 3.3851 5.4143 25 6 1.6056 4.0129 6.6729 26 6 3.4281 3.5738 4.8859 27 7 3.5264 2.8662 3.7898 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 4.3884 2.2154 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 3.7419 3.5070 -2.9058 38 1 6.0252 2.7013 -2.6918 39 1 5.5108 1.2478 -3.5811 40 1 7.4731 2.4834 -4.9542 41 1 10.0258 2.8720 -7.0691 42 1 2.6228 0.4187 2.5299 43 1 0.9444 1.0115 2.5303 44 1 0.4683 2.1852 4.7337 45 1 1.1314 4.9638 6.4297 46 1 2.4224 4.1831 7.3743 47 1 0.8715 3.3459 7.1250 48 1 4.2023 4.1964 5.3092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699171552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:10 Heat of formation + Delta-G solvation = 15.842570 kcal Electronic energy + Delta-G solvation = -28192.120878 eV Core-core repulsion = 24091.335402 eV Total energy + Delta-G solvation = -4100.785476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54526 -40.15282 -38.25822 -36.68950 -35.36160 -34.04326 -33.77758 -31.88601 -31.46361 -31.14421 -29.74151 -28.37273 -26.32371 -25.52895 -24.02344 -23.78830 -22.39857 -21.36661 -20.64239 -19.44690 -19.04418 -17.90586 -17.74158 -17.38925 -16.33024 -16.13366 -15.81425 -15.51477 -15.12119 -14.64661 -14.49544 -14.38510 -14.13430 -14.01252 -13.87157 -13.69894 -13.45697 -13.30053 -13.22556 -13.07489 -12.96242 -12.57207 -12.35770 -12.18662 -12.17777 -12.01769 -11.61057 -11.50313 -11.47497 -11.11001 -10.95354 -10.73030 -10.42207 -10.31592 -10.19009 -9.56708 -9.47635 -9.07602 -8.57686 -8.43864 -8.06473 -7.93616 -6.39080 -3.79958 1.59040 2.05737 2.22067 2.60892 2.64424 3.22284 3.27574 3.32271 3.86015 3.93718 4.12923 4.15236 4.33825 4.45077 4.47573 4.57479 4.67941 4.75846 4.89055 4.94759 5.00056 5.14429 5.16461 5.19812 5.26697 5.28384 5.31145 5.43221 5.48507 5.53316 5.68132 5.72425 5.75855 5.86525 5.87758 5.88407 6.00996 6.16683 6.30096 6.42320 6.66760 6.99044 7.18984 7.49162 7.57430 7.64392 7.81741 8.08568 8.63921 9.20160 9.56815 10.08392 10.78628 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.001805 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.408141 B =15506.195241 C =16622.656505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 N -0.610 5.610 4 C 0.120 3.880 5 C 0.046 3.954 6 N -0.666 5.666 7 C 0.053 3.947 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.932 3.068 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.499 3.501 20 O -0.503 6.503 21 C 0.119 3.881 22 N -0.365 5.365 23 C 0.049 3.951 24 C -0.239 4.239 25 C -0.071 4.071 26 C 0.044 3.956 27 N -0.263 5.263 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.351 0.649 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.171 0.829 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.458 -9.169 25.594 32.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 N -0.345 5.345 4 C -0.003 4.003 5 C -0.085 4.085 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.284 3.716 20 O -0.376 6.376 21 C -0.007 4.007 22 N -0.147 5.147 23 C -0.096 4.096 24 C -0.250 4.250 25 C -0.129 4.129 26 C -0.143 4.143 27 N -0.082 5.082 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.131 0.869 43 H 0.140 0.860 44 H 0.189 0.811 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.180 -9.092 23.696 30.648 hybrid contribution 0.636 0.684 0.605 1.113 sum -16.544 -8.408 24.301 30.577 Atomic orbital electron populations 1.22242 0.95468 1.02674 1.02793 1.21697 0.94711 0.82140 1.03936 1.47948 1.66161 1.14538 1.05831 1.21420 0.96721 0.98679 0.83475 1.22249 0.95880 0.99682 0.90675 1.60028 1.23791 1.18404 1.27716 1.21652 0.89056 1.01191 0.96126 1.19788 0.83986 0.86254 0.87302 1.90519 1.42357 1.46593 1.67284 1.41851 1.10635 1.46154 1.21359 1.19666 0.97884 1.27700 0.97727 0.87952 1.25266 0.95165 0.97636 0.99881 1.69604 1.03194 1.41382 1.40159 0.85906 0.77148 0.79719 0.81365 1.19921 1.20984 1.19886 1.20515 0.78679 0.87292 0.85132 1.90822 1.42989 1.17188 1.86555 1.21540 1.03761 0.91870 0.83526 1.47966 1.10604 1.37304 1.18862 1.22266 0.97240 1.00026 0.90061 1.20140 0.95748 1.06716 1.02399 1.20045 1.00378 0.99550 0.92950 1.23867 0.97493 0.99540 0.93434 1.77529 1.01939 1.11152 1.17605 0.91023 0.92727 0.91613 0.89213 0.90442 0.89157 0.89774 0.95047 0.91139 0.82984 0.93795 0.89639 0.77446 0.91831 0.86919 0.85956 0.81139 0.92112 0.91858 0.92269 0.80122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 10.24 37.16 0.38 -0.31 16 2 C 0.10 0.49 5.93 -4.04 -0.02 0.47 16 3 N -0.61 -5.50 2.47 -173.68 -0.43 -5.92 16 4 C 0.12 1.36 5.67 -4.04 -0.02 1.33 16 5 C 0.05 0.61 6.01 -3.82 -0.02 0.59 16 6 N -0.67 -11.36 6.12 -115.06 -0.70 -12.06 16 7 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 8 C 0.44 10.81 7.82 -10.98 -0.09 10.73 16 9 O -0.58 -16.30 15.78 5.54 0.09 -16.21 16 10 N -0.56 -14.73 5.29 -10.96 -0.06 -14.78 16 11 C -0.30 -8.58 9.68 -14.93 -0.14 -8.72 16 12 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 15 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.50 5.54 7.70 -10.99 -0.08 5.46 16 20 O -0.50 -8.23 15.28 5.56 0.08 -8.15 16 21 C 0.12 0.88 5.54 -5.19 -0.03 0.85 16 22 N -0.36 -3.83 3.40 -62.54 -0.21 -4.04 16 23 C 0.05 0.41 11.36 -17.23 -0.20 0.21 16 24 C -0.24 -2.15 6.10 -105.05 -0.64 -2.79 16 25 C -0.07 -0.43 10.37 36.01 0.37 -0.05 16 26 C 0.04 0.48 11.96 -17.36 -0.21 0.28 16 27 N -0.26 -3.55 11.64 30.62 0.36 -3.20 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.05 0.20 7.22 -51.93 -0.38 -0.18 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.08 0.22 6.44 -51.93 -0.33 -0.11 16 33 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.08 1.13 7.42 -51.93 -0.39 0.74 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.35 6.33 8.43 -39.29 -0.33 6.00 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.11 0.62 7.40 -51.93 -0.38 0.23 16 43 H 0.12 0.43 7.12 -51.93 -0.37 0.06 16 44 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 406.90 15.07 6.13 6.13 Total: -1.00 -38.01 406.90 -7.38 -45.38 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.50 Total: 11.22 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -0.83 Total: 9.49 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.32 Total: -64.28 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.17 Total: -24.36 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.01 -7.38 -45.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699171552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.226 kcal (2) G-P(sol) polarization free energy of solvation -38.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds