Wall clock time and date at job start Tue Mar 31 2020 20:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47421 * 2 1 4 4 C 1.46502 * 119.99851 * 270.00132 * 3 2 1 5 5 C 1.53001 * 109.47022 * 269.99492 * 4 3 2 6 6 N 1.46899 * 109.47210 * 179.97438 * 5 4 3 7 7 C 1.46897 * 111.00215 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.47230 * 179.97438 * 7 6 5 9 9 O 1.21295 * 119.99764 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99758 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99490 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00408 * 0.02562 * 11 10 8 13 13 C 1.38954 * 119.99545 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00209 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99664 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47000 * 60.00033 * 15 13 11 17 17 H 1.48507 * 109.46985 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47218 * 299.99997 * 15 13 11 19 19 C 1.34775 * 120.00021 * 89.99693 * 3 2 1 20 20 O 1.21281 * 119.99976 * 180.02562 * 19 3 2 21 21 C 1.50702 * 120.00362 * 0.02562 * 19 3 2 22 22 N 1.46502 * 109.47370 * 180.02562 * 21 19 3 23 23 C 1.34938 * 126.03706 * 125.31276 * 22 21 19 24 24 C 1.35319 * 107.74424 * 180.14574 * 23 22 21 25 25 C 1.50703 * 126.04136 * 179.87287 * 24 23 22 26 26 C 1.39874 * 107.92067 * 359.60416 * 24 23 22 27 27 N 1.30837 * 108.19824 * 0.24495 * 26 24 23 28 28 H 1.08998 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46950 * 300.00195 * 1 2 3 30 30 H 1.08999 * 109.46750 * 60.00284 * 1 2 3 31 31 H 1.09002 * 109.46950 * 239.99805 * 2 1 3 32 32 H 1.09006 * 109.46856 * 120.00068 * 2 1 3 33 33 H 1.09001 * 109.47027 * 29.99822 * 4 3 2 34 34 H 1.09007 * 109.46707 * 149.99690 * 4 3 2 35 35 H 1.09002 * 109.47024 * 300.00301 * 5 4 3 36 36 H 1.08997 * 109.46683 * 60.00424 * 5 4 3 37 37 H 1.00901 * 110.99640 * 56.04422 * 6 5 4 38 38 H 1.08997 * 109.46938 * 300.00251 * 7 6 5 39 39 H 1.09001 * 109.46937 * 60.00152 * 7 6 5 40 40 H 0.97002 * 120.00116 * 0.02562 * 10 8 7 41 41 H 0.96999 * 120.00212 * 179.97438 * 14 13 11 42 42 H 1.09000 * 109.46660 * 59.99666 * 21 19 3 43 43 H 1.09004 * 109.47018 * 299.99933 * 21 19 3 44 44 H 1.08003 * 126.13278 * 359.97438 * 23 22 21 45 45 H 1.09002 * 109.47152 * 269.71139 * 25 24 23 46 46 H 1.09001 * 109.46980 * 149.71239 * 25 24 23 47 47 H 1.09004 * 109.47113 * 29.71220 * 25 24 23 48 48 H 1.07991 * 125.90010 * 180.21698 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.7076 1.8313 -1.7104 6 7 3.9523 2.5232 -2.9829 7 6 5.3328 2.3138 -3.4391 8 6 5.5457 3.0363 -4.7444 9 8 4.6368 3.6643 -5.2451 10 7 6.7462 2.9853 -5.3548 11 6 6.9399 3.6431 -6.5420 12 1 6.1307 4.2023 -6.9879 13 6 8.1775 3.5901 -7.1716 14 7 9.1620 2.9093 -6.6294 15 14 8.4413 4.4857 -8.7896 16 1 8.1986 5.9380 -8.5967 17 1 9.8371 4.2745 -9.2504 18 1 7.4980 3.9571 -9.8074 19 6 2.2430 2.0165 1.1672 20 8 2.6469 3.1601 1.1672 21 6 1.9923 1.3060 2.4723 22 7 2.3090 2.2038 3.5859 23 6 1.4814 2.5344 4.5991 24 6 2.1469 3.3851 5.4143 25 6 1.6056 4.0129 6.6729 26 6 3.4281 3.5738 4.8859 27 7 3.5264 2.8662 3.7898 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 4.3884 2.2154 -0.9507 36 1 3.8745 0.7621 -1.8407 37 1 3.7419 3.5070 -2.9058 38 1 6.0252 2.7013 -2.6918 39 1 5.5108 1.2478 -3.5811 40 1 7.4731 2.4834 -4.9542 41 1 10.0258 2.8720 -7.0691 42 1 2.6228 0.4187 2.5299 43 1 0.9444 1.0115 2.5303 44 1 0.4683 2.1852 4.7337 45 1 1.1314 4.9638 6.4297 46 1 2.4224 4.1831 7.3743 47 1 0.8715 3.3459 7.1250 48 1 4.2023 4.1964 5.3092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699171552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:09 Heat of formation + Delta-G solvation = -13.236352 kcal Electronic energy + Delta-G solvation = -28193.381834 eV Core-core repulsion = 24091.335402 eV Total energy + Delta-G solvation = -4102.046433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.23081 -40.95952 -40.18614 -37.68926 -36.57924 -35.85153 -34.67734 -33.32225 -32.53796 -32.13348 -30.55254 -29.30879 -27.65438 -26.49790 -25.53078 -24.34611 -23.49397 -22.15080 -21.29805 -21.16558 -20.05844 -19.83559 -18.51767 -18.10341 -17.86198 -17.11388 -16.97021 -16.65732 -16.44574 -15.98668 -15.85898 -15.35960 -15.28906 -15.00485 -14.83089 -14.75616 -14.40447 -14.25391 -14.01114 -13.85357 -13.67387 -13.56407 -13.51477 -13.38201 -13.10908 -12.95569 -12.76927 -12.68284 -12.66129 -12.45957 -12.13551 -12.12780 -11.97304 -11.53333 -11.43386 -11.16015 -10.43814 -10.32360 -10.05625 -9.83334 -9.50088 -9.22343 -8.49182 -5.98711 0.92144 1.38340 1.40104 1.43006 1.46867 1.51730 1.90587 1.92101 2.00069 2.27788 2.90322 3.17254 3.27260 3.50558 3.64228 3.92651 3.95306 4.00086 4.05453 4.15514 4.16358 4.24922 4.36994 4.42889 4.43576 4.50181 4.52086 4.58516 4.61389 4.74414 4.84676 4.92750 4.94919 4.99610 5.01604 5.25907 5.33750 5.37751 5.40817 5.43793 5.73994 5.78449 6.01508 6.09512 6.20417 6.31080 6.55936 6.77620 7.04033 7.08573 7.51155 8.06178 8.67993 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017003 B = 0.001805 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.408141 B =15506.195241 C =16622.656505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 N -0.602 5.602 4 C 0.127 3.873 5 C 0.056 3.944 6 N -0.674 5.674 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.571 5.571 11 C -0.338 4.338 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.996 3.004 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.270 1.270 19 C 0.492 3.508 20 O -0.567 6.567 21 C 0.118 3.882 22 N -0.373 5.373 23 C 0.053 3.947 24 C -0.255 4.255 25 C -0.067 4.067 26 C 0.027 3.973 27 N -0.323 5.323 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.013 0.987 36 H 0.091 0.909 37 H 0.342 0.658 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.396 0.604 41 H 0.279 0.721 42 H 0.136 0.864 43 H 0.169 0.831 44 H 0.214 0.786 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.812 -11.366 26.673 34.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.030 4.030 3 N -0.335 5.335 4 C 0.003 3.997 5 C -0.074 4.074 6 N -0.306 5.306 7 C -0.066 4.066 8 C 0.224 3.776 9 O -0.509 6.509 10 N -0.208 5.208 11 C -0.467 4.467 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.819 3.181 16 H -0.198 1.198 17 H -0.193 1.193 18 H -0.195 1.195 19 C 0.279 3.721 20 O -0.445 6.445 21 C -0.006 4.006 22 N -0.156 5.156 23 C -0.091 4.091 24 C -0.266 4.266 25 C -0.125 4.125 26 C -0.159 4.159 27 N -0.143 5.143 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.109 0.891 37 H 0.159 0.841 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.230 0.770 41 H 0.088 0.912 42 H 0.154 0.846 43 H 0.186 0.814 44 H 0.231 0.769 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -18.538 -11.359 24.799 32.980 hybrid contribution 1.008 1.319 0.293 1.685 sum -17.530 -10.040 25.092 32.214 Atomic orbital electron populations 1.22216 0.94366 1.03856 1.02360 1.22055 0.95578 0.79701 1.05688 1.48040 1.65217 1.15883 1.04405 1.21189 0.95673 0.97701 0.85127 1.22260 0.96740 1.00060 0.88365 1.60069 1.22619 1.18077 1.29824 1.21524 0.90433 1.01631 0.93038 1.20772 0.82819 0.85390 0.88576 1.90486 1.43423 1.48175 1.68797 1.41916 1.11393 1.46349 1.21154 1.19668 0.98194 1.29452 0.99428 0.90212 1.26088 0.94349 0.97899 1.02931 1.69667 1.03529 1.41532 1.41304 0.84952 0.77694 0.78328 0.77122 1.19802 1.19337 1.19499 1.21267 0.77395 0.86710 0.86681 1.90798 1.46048 1.20120 1.87524 1.21889 1.06916 0.91247 0.80528 1.48207 1.10083 1.37456 1.19852 1.22992 0.98412 0.98881 0.88812 1.20566 0.95136 1.07241 1.03681 1.20072 1.00878 0.99683 0.91839 1.24248 0.98983 0.99443 0.93250 1.77426 1.04489 1.13258 1.19143 0.88960 0.91939 0.93349 0.88790 0.87447 0.87786 0.92503 0.96879 0.89090 0.84053 0.92525 0.87185 0.76969 0.91202 0.84628 0.81409 0.76937 0.92174 0.91447 0.90389 0.79247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.24 71.98 0.74 -0.06 16 2 C 0.09 0.62 5.93 86.38 0.51 1.13 16 3 N -0.60 -10.01 2.47 -821.79 -2.03 -12.04 16 4 C 0.13 2.86 5.67 86.38 0.49 3.35 16 5 C 0.06 1.47 6.01 86.30 0.52 1.99 16 6 N -0.67 -23.05 6.12 -517.94 -3.17 -26.22 16 7 C 0.07 2.46 6.17 85.56 0.53 2.99 16 8 C 0.44 21.83 7.82 87.66 0.69 22.52 16 9 O -0.62 -35.85 15.78 -3.08 -0.05 -35.89 16 10 N -0.57 -30.46 5.29 -306.97 -1.62 -32.08 16 11 C -0.34 -19.75 9.68 84.04 0.81 -18.94 16 12 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 13 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 14 N -0.92 -50.67 13.05 21.66 0.28 -50.38 16 15 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C 0.49 10.58 7.70 87.66 0.68 11.25 16 20 O -0.57 -19.36 15.28 -3.03 -0.05 -19.41 16 21 C 0.12 1.45 5.54 85.63 0.47 1.92 16 22 N -0.37 -7.36 3.40 -351.79 -1.20 -8.55 16 23 C 0.05 0.78 11.36 83.54 0.95 1.73 16 24 C -0.25 -4.36 6.10 -20.14 -0.12 -4.48 16 25 C -0.07 -0.70 10.37 71.24 0.74 0.04 16 26 C 0.03 0.61 11.96 85.24 1.02 1.63 16 27 N -0.32 -8.95 11.64 -57.03 -0.66 -9.61 16 28 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.06 0.21 7.22 -2.39 -0.02 0.19 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 0.62 8.07 -2.39 -0.02 0.60 16 32 H 0.11 0.14 6.44 -2.38 -0.02 0.12 16 33 H 0.10 2.05 8.07 -2.39 -0.02 2.03 16 34 H 0.06 1.61 7.42 -2.38 -0.02 1.59 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.34 12.79 8.43 -89.69 -0.76 12.03 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.40 20.08 7.90 -92.71 -0.73 19.35 16 41 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.14 1.03 7.40 -2.39 -0.02 1.01 16 43 H 0.17 0.41 7.12 -2.38 -0.02 0.39 16 44 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.19 3.42 8.06 -2.92 -0.02 3.40 16 Total: -1.00 -87.32 406.90 1.51 -85.81 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.50 Total: 37.74 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 8.49 Total: 24.84 kcal Atomic # 7 Polarization: -130.49 SS G_CDS: -8.40 Total: -138.89 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -0.09 Total: -55.30 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -87.32 1.51 -85.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699171552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.579 kcal (2) G-P(sol) polarization free energy of solvation -87.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds