Wall clock time and date at job start Tue Mar 31 2020 21:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00185 * 2 1 4 4 C 1.52998 * 109.47379 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47252 * 65.00102 * 4 3 2 6 6 C 1.36939 * 120.00161 * 269.99956 * 5 4 3 7 7 H 1.08000 * 120.00298 * 141.79433 * 6 5 4 8 8 C 1.38810 * 119.99964 * 321.80384 * 6 5 4 9 9 N 1.31616 * 119.99886 * 339.27196 * 8 6 5 10 10 Si 1.86799 * 120.00236 * 159.27390 * 8 6 5 11 11 H 1.48505 * 109.47126 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47443 * 119.99928 * 10 8 6 13 13 H 1.48507 * 109.47236 * 240.00130 * 10 8 6 14 14 C 1.46503 * 120.00051 * 89.99938 * 5 4 3 15 15 C 1.53042 * 109.46075 * 244.77285 * 14 5 4 16 16 C 1.53186 * 109.31289 * 178.63021 * 15 14 5 17 17 N 1.46928 * 108.77874 * 54.63449 * 16 15 14 18 18 C 1.34777 * 120.63164 * 126.37015 * 17 16 15 19 19 O 1.21280 * 119.99869 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99917 * 180.02562 * 18 17 16 21 21 C 1.50697 * 109.47211 * 179.97438 * 20 18 17 22 22 N 1.33246 * 125.52959 * 269.69826 * 21 20 18 23 23 C 1.30826 * 109.82822 * 179.85524 * 22 21 20 24 24 N 1.34426 * 108.08346 * 0.39756 * 23 22 21 25 25 H 0.96996 * 126.83054 * 179.79175 * 24 23 22 26 26 N 1.30718 * 125.52497 * 89.99756 * 21 20 18 27 27 C 1.46928 * 118.73550 * 306.64527 * 17 16 15 28 28 C 1.52756 * 109.00991 * 53.31052 * 27 17 16 29 29 H 1.09003 * 109.47420 * 59.99765 * 1 2 3 30 30 H 1.09000 * 109.46803 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47038 * 299.99955 * 1 2 3 32 32 H 1.08998 * 109.47103 * 60.00041 * 3 2 1 33 33 H 1.09005 * 109.47072 * 300.00707 * 3 2 1 34 34 H 1.09005 * 109.46944 * 305.00193 * 4 3 2 35 35 H 1.09000 * 109.47106 * 185.00412 * 4 3 2 36 36 H 0.97001 * 120.00170 * 180.02562 * 9 8 6 37 37 H 1.08989 * 109.45904 * 4.75002 * 14 5 4 38 38 H 1.08997 * 109.49760 * 58.67685 * 15 14 5 39 39 H 1.09007 * 109.52629 * 298.59523 * 15 14 5 40 40 H 1.09003 * 109.58764 * 294.84904 * 16 15 14 41 41 H 1.08996 * 109.70445 * 174.49322 * 16 15 14 42 42 H 1.09001 * 109.47625 * 299.99723 * 20 18 17 43 43 H 1.09005 * 109.46902 * 60.00073 * 20 18 17 44 44 H 1.08001 * 125.96155 * 180.19571 * 23 22 21 45 45 H 1.09002 * 109.58545 * 173.13972 * 27 17 16 46 46 H 1.09000 * 109.59119 * 293.56506 * 27 17 16 47 47 H 1.09003 * 109.56794 * 185.55027 * 28 27 17 48 48 H 1.09004 * 109.39281 * 65.50992 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8119 -1.3094 -2.2439 8 6 4.5856 -1.5184 -0.2564 9 7 5.3006 -0.9143 0.6689 10 14 4.2288 -3.3466 -0.1157 11 1 3.4099 -3.7819 -1.2756 12 1 5.5078 -4.1010 -0.1012 13 1 3.4843 -3.6103 1.1419 14 6 4.2864 1.4007 -2.4148 15 6 3.2911 1.1023 -3.5384 16 6 3.5977 2.0027 -4.7392 17 7 5.0061 1.8235 -5.1173 18 6 5.3422 1.5048 -6.3830 19 8 4.4783 1.3638 -7.2225 20 6 6.7912 1.3238 -6.7551 21 6 6.8945 0.9735 -8.2171 22 7 6.8852 -0.2602 -8.7203 23 6 6.9888 -0.2088 -10.0235 24 7 7.0766 1.0831 -10.3844 25 1 7.1655 1.4303 -11.2857 26 7 7.0133 1.8306 -9.1969 27 6 6.0409 1.9921 -4.0879 28 6 5.7073 1.0973 -2.8957 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5681 0.8410 35 1 3.9785 2.1765 0.0890 36 1 5.6425 -1.4185 1.4237 37 1 4.2143 2.4517 -2.1354 38 1 2.2775 1.2964 -3.1876 39 1 3.3794 0.0572 -3.8354 40 1 3.4215 3.0441 -4.4695 41 1 2.9567 1.7288 -5.5771 42 1 7.3339 2.2495 -6.5637 43 1 7.2219 0.5200 -6.1579 44 1 7.0046 -1.0565 -10.6924 45 1 7.0113 1.7087 -4.4954 46 1 6.0680 3.0326 -3.7640 47 1 6.4134 1.2877 -2.0874 48 1 5.7735 0.0521 -3.1980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699690009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:45 Heat of formation + Delta-G solvation = 36.725963 kcal Electronic energy + Delta-G solvation = -30208.797222 eV Core-core repulsion = 26108.917318 eV Total energy + Delta-G solvation = -4099.879904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.22284 -39.85598 -37.62750 -36.79641 -34.88619 -33.48186 -32.12870 -31.73125 -30.79052 -30.55493 -28.94482 -27.94246 -25.63728 -24.77477 -23.30146 -22.93654 -22.65922 -21.29457 -20.45326 -19.76645 -18.73393 -18.35547 -17.22526 -16.22460 -15.81729 -15.72250 -15.49378 -15.19004 -15.01373 -14.83042 -14.73815 -14.00337 -13.81792 -13.66284 -13.59563 -13.37880 -13.18544 -12.86455 -12.40952 -12.26017 -12.00887 -11.80232 -11.73718 -11.50232 -11.34618 -10.87663 -10.74690 -10.66849 -10.62485 -10.41069 -10.29587 -10.15793 -9.97676 -9.94477 -9.84622 -9.77238 -9.52075 -9.35781 -8.79078 -8.34647 -8.31142 -6.45804 -5.65958 -3.22138 1.47043 2.48907 2.69376 2.81515 3.32852 3.47887 3.55959 3.60421 3.96889 4.48839 4.59874 4.70070 4.71780 4.79385 5.21151 5.25329 5.29172 5.43998 5.47910 5.57329 5.60692 5.76563 5.77064 5.82229 5.84626 6.02321 6.05596 6.06905 6.11169 6.17268 6.19657 6.24181 6.33854 6.44501 6.51442 6.65913 6.73415 6.74873 6.85997 6.90807 7.16089 7.24062 7.63811 7.68852 7.95030 7.97262 8.10814 8.35983 8.66314 9.30523 9.94229 10.49464 11.35568 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002935 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.575355 B = 9538.088817 C =10257.837879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.047 3.953 4 C 0.144 3.856 5 N -0.572 5.572 6 C -0.232 4.232 7 H 0.055 0.945 8 C 0.020 3.980 9 N -0.893 5.893 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.290 1.290 14 C 0.177 3.823 15 C -0.140 4.140 16 C 0.116 3.884 17 N -0.602 5.602 18 C 0.525 3.475 19 O -0.543 6.543 20 C -0.050 4.050 21 C 0.255 3.745 22 N -0.532 5.532 23 C 0.261 3.739 24 N -0.487 5.487 25 H 0.440 0.560 26 N -0.308 5.308 27 C 0.104 3.896 28 C -0.134 4.134 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.026 0.974 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.251 0.749 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.222 0.778 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.515 7.377 -14.123 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.033 4.033 4 C 0.017 3.983 5 N -0.291 5.291 6 C -0.361 4.361 7 H 0.073 0.927 8 C -0.180 4.180 9 N -0.537 5.537 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.217 1.217 14 C 0.070 3.930 15 C -0.180 4.180 16 C -0.007 4.007 17 N -0.336 5.336 18 C 0.311 3.689 19 O -0.421 6.421 20 C -0.093 4.093 21 C -0.029 4.029 22 N -0.259 5.259 23 C -0.038 4.038 24 N -0.205 5.205 25 H 0.285 0.715 26 N -0.137 5.137 27 C -0.019 4.019 28 C -0.174 4.174 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.238 0.762 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.259 7.521 -14.044 16.091 hybrid contribution -0.505 -0.769 -0.567 1.081 sum 1.754 6.752 -14.611 16.191 Atomic orbital electron populations 1.22628 0.84354 1.01434 0.98339 1.88220 1.16437 1.27683 1.94796 1.23461 0.99041 0.84088 0.96680 1.21032 0.87359 0.96541 0.93338 1.43729 1.75265 1.02721 1.07342 1.18753 1.35374 0.81539 1.00465 0.92721 1.25003 0.96512 0.97351 0.99096 1.69959 1.34836 1.35448 1.13431 0.86383 0.77326 0.86153 0.77740 1.20304 1.22233 1.21676 1.20326 0.91186 0.93410 0.88101 1.22403 1.00440 1.00142 0.95058 1.21654 0.81138 0.99314 0.98567 1.48087 1.08297 1.68830 1.08343 1.20051 0.90107 0.76577 0.82165 1.90686 1.51207 1.51162 1.49054 1.19970 0.96400 1.05262 0.87639 1.23367 0.97063 0.86475 0.95968 1.70390 1.23591 1.24562 1.07391 1.26071 0.96076 0.88556 0.93111 1.48071 1.57072 1.05825 1.09494 0.71482 1.77961 1.26261 1.18731 0.90734 1.21886 0.90146 1.00454 0.89382 1.22194 0.99566 1.00137 0.95459 0.95338 0.90791 0.95608 0.95955 0.95538 0.87974 0.94304 0.93952 0.93594 0.91742 0.91341 0.92176 0.89911 0.86588 0.85735 0.76160 0.90451 0.91633 0.90591 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.70 10.18 -35.23 -0.36 -8.06 16 3 C 0.05 0.92 6.28 37.16 0.23 1.15 16 4 C 0.14 3.19 5.70 -4.05 -0.02 3.16 16 5 N -0.57 -13.06 2.34 -165.62 -0.39 -13.44 16 6 C -0.23 -6.02 7.60 -15.06 -0.11 -6.14 16 7 H 0.06 1.49 7.09 -52.49 -0.37 1.12 16 8 C 0.02 0.53 4.97 -17.43 -0.09 0.44 16 9 N -0.89 -24.88 11.47 55.49 0.64 -24.24 16 10 Si 0.89 22.17 29.60 -169.99 -5.03 17.14 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 C 0.18 3.33 2.60 -67.88 -0.18 3.16 16 15 C -0.14 -2.51 5.38 -26.61 -0.14 -2.65 16 16 C 0.12 1.81 6.43 -3.71 -0.02 1.78 16 17 N -0.60 -9.06 2.98 -173.04 -0.52 -9.57 16 18 C 0.52 8.41 7.69 -10.99 -0.08 8.33 16 19 O -0.54 -10.72 15.45 5.56 0.09 -10.64 16 20 C -0.05 -0.65 4.67 -29.04 -0.14 -0.78 16 21 C 0.25 3.66 6.63 -156.85 -1.04 2.62 16 22 N -0.53 -7.46 11.19 -11.98 -0.13 -7.60 16 23 C 0.26 2.45 13.13 -90.66 -1.19 1.26 16 24 N -0.49 -4.50 7.45 29.53 0.22 -4.28 16 25 H 0.44 2.18 8.96 -182.33 -1.63 0.55 16 26 N -0.31 -4.18 12.80 32.42 0.41 -3.77 16 27 C 0.10 1.38 6.31 -3.93 -0.02 1.36 16 28 C -0.13 -2.33 5.21 -26.83 -0.14 -2.47 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 2.65 5.54 -51.93 -0.29 2.36 16 35 H 0.04 0.78 7.88 -51.93 -0.41 0.37 16 36 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.05 0.81 7.77 -51.94 -0.40 0.40 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.41 7.24 -51.93 -0.38 1.04 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 42 H 0.12 1.16 7.95 -51.93 -0.41 0.75 16 43 H 0.12 1.44 7.68 -51.93 -0.40 1.05 16 44 H 0.22 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.08 0.83 5.94 -51.93 -0.31 0.53 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.07 1.49 7.61 -51.93 -0.40 1.09 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -35.92 388.71 -9.77 -45.69 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.72 Total: 0.08 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -1.84 Total: 12.83 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.23 Total: -62.90 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.27 Total: -18.70 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.92 -9.77 -45.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699690009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.418 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds