Wall clock time and date at job start Tue Mar 31 2020 21:35:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42898 * 114.00185 * 2 1
4 4 C 1.52998 * 109.47379 * 180.02562 * 3 2 1
5 5 N 1.46493 * 109.47252 * 65.00102 * 4 3 2
6 6 C 1.36939 * 120.00161 * 269.99956 * 5 4 3
7 7 H 1.08000 * 120.00298 * 141.79433 * 6 5 4
8 8 C 1.38810 * 119.99964 * 321.80384 * 6 5 4
9 9 N 1.31616 * 119.99886 * 339.27196 * 8 6 5
10 10 Si 1.86799 * 120.00236 * 159.27390 * 8 6 5
11 11 H 1.48505 * 109.47126 * 359.97438 * 10 8 6
12 12 H 1.48497 * 109.47443 * 119.99928 * 10 8 6
13 13 H 1.48507 * 109.47236 * 240.00130 * 10 8 6
14 14 C 1.46503 * 120.00051 * 89.99938 * 5 4 3
15 15 C 1.53042 * 109.46075 * 244.77285 * 14 5 4
16 16 C 1.53186 * 109.31289 * 178.63021 * 15 14 5
17 17 N 1.46928 * 108.77874 * 54.63449 * 16 15 14
18 18 C 1.34777 * 120.63164 * 126.37015 * 17 16 15
19 19 O 1.21280 * 119.99869 * 0.02562 * 18 17 16
20 20 C 1.50696 * 119.99917 * 180.02562 * 18 17 16
21 21 C 1.50697 * 109.47211 * 179.97438 * 20 18 17
22 22 N 1.33246 * 125.52959 * 269.69826 * 21 20 18
23 23 C 1.30826 * 109.82822 * 179.85524 * 22 21 20
24 24 N 1.34426 * 108.08346 * 0.39756 * 23 22 21
25 25 H 0.96996 * 126.83054 * 179.79175 * 24 23 22
26 26 N 1.30718 * 125.52497 * 89.99756 * 21 20 18
27 27 C 1.46928 * 118.73550 * 306.64527 * 17 16 15
28 28 C 1.52756 * 109.00991 * 53.31052 * 27 17 16
29 29 H 1.09003 * 109.47420 * 59.99765 * 1 2 3
30 30 H 1.09000 * 109.46803 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47038 * 299.99955 * 1 2 3
32 32 H 1.08998 * 109.47103 * 60.00041 * 3 2 1
33 33 H 1.09005 * 109.47072 * 300.00707 * 3 2 1
34 34 H 1.09005 * 109.46944 * 305.00193 * 4 3 2
35 35 H 1.09000 * 109.47106 * 185.00412 * 4 3 2
36 36 H 0.97001 * 120.00170 * 180.02562 * 9 8 6
37 37 H 1.08989 * 109.45904 * 4.75002 * 14 5 4
38 38 H 1.08997 * 109.49760 * 58.67685 * 15 14 5
39 39 H 1.09007 * 109.52629 * 298.59523 * 15 14 5
40 40 H 1.09003 * 109.58764 * 294.84904 * 16 15 14
41 41 H 1.08996 * 109.70445 * 174.49322 * 16 15 14
42 42 H 1.09001 * 109.47625 * 299.99723 * 20 18 17
43 43 H 1.09005 * 109.46902 * 60.00073 * 20 18 17
44 44 H 1.08001 * 125.96155 * 180.19571 * 23 22 21
45 45 H 1.09002 * 109.58545 * 173.13972 * 27 17 16
46 46 H 1.09000 * 109.59119 * 293.56506 * 27 17 16
47 47 H 1.09003 * 109.56794 * 185.55027 * 28 27 17
48 48 H 1.09004 * 109.39281 * 65.50992 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5354 1.1846 -0.0006
5 7 3.9757 0.5645 -1.2527
6 6 4.0968 -0.7970 -1.3369
7 1 3.8119 -1.3094 -2.2439
8 6 4.5856 -1.5184 -0.2564
9 7 5.3006 -0.9143 0.6689
10 14 4.2288 -3.3466 -0.1157
11 1 3.4099 -3.7819 -1.2756
12 1 5.5078 -4.1010 -0.1012
13 1 3.4843 -3.6103 1.1419
14 6 4.2864 1.4007 -2.4148
15 6 3.2911 1.1023 -3.5384
16 6 3.5977 2.0027 -4.7392
17 7 5.0061 1.8235 -5.1173
18 6 5.3422 1.5048 -6.3830
19 8 4.4783 1.3638 -7.2225
20 6 6.7912 1.3238 -6.7551
21 6 6.8945 0.9735 -8.2171
22 7 6.8852 -0.2602 -8.7203
23 6 6.9888 -0.2088 -10.0235
24 7 7.0766 1.0831 -10.3844
25 1 7.1655 1.4303 -11.2857
26 7 7.0133 1.8306 -9.1969
27 6 6.0409 1.9921 -4.0879
28 6 5.7073 1.0973 -2.8957
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.6886 1.8463 0.8900
33 1 1.6885 1.8464 -0.8900
34 1 3.8514 0.5681 0.8410
35 1 3.9785 2.1765 0.0890
36 1 5.6425 -1.4185 1.4237
37 1 4.2143 2.4517 -2.1354
38 1 2.2775 1.2964 -3.1876
39 1 3.3794 0.0572 -3.8354
40 1 3.4215 3.0441 -4.4695
41 1 2.9567 1.7288 -5.5771
42 1 7.3339 2.2495 -6.5637
43 1 7.2219 0.5200 -6.1579
44 1 7.0046 -1.0565 -10.6924
45 1 7.0113 1.7087 -4.4954
46 1 6.0680 3.0326 -3.7640
47 1 6.4134 1.2877 -2.0874
48 1 5.7735 0.0521 -3.1980
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699690009.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:35:45
Heat of formation + Delta-G solvation = 36.725963 kcal
Electronic energy + Delta-G solvation = -30208.797222 eV
Core-core repulsion = 26108.917318 eV
Total energy + Delta-G solvation = -4099.879904 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 337.190 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-42.22284 -39.85598 -37.62750 -36.79641 -34.88619 -33.48186 -32.12870 -31.73125
-30.79052 -30.55493 -28.94482 -27.94246 -25.63728 -24.77477 -23.30146 -22.93654
-22.65922 -21.29457 -20.45326 -19.76645 -18.73393 -18.35547 -17.22526 -16.22460
-15.81729 -15.72250 -15.49378 -15.19004 -15.01373 -14.83042 -14.73815 -14.00337
-13.81792 -13.66284 -13.59563 -13.37880 -13.18544 -12.86455 -12.40952 -12.26017
-12.00887 -11.80232 -11.73718 -11.50232 -11.34618 -10.87663 -10.74690 -10.66849
-10.62485 -10.41069 -10.29587 -10.15793 -9.97676 -9.94477 -9.84622 -9.77238
-9.52075 -9.35781 -8.79078 -8.34647 -8.31142 -6.45804 -5.65958 -3.22138
1.47043 2.48907 2.69376 2.81515 3.32852 3.47887 3.55959 3.60421
3.96889 4.48839 4.59874 4.70070 4.71780 4.79385 5.21151 5.25329
5.29172 5.43998 5.47910 5.57329 5.60692 5.76563 5.77064 5.82229
5.84626 6.02321 6.05596 6.06905 6.11169 6.17268 6.19657 6.24181
6.33854 6.44501 6.51442 6.65913 6.73415 6.74873 6.85997 6.90807
7.16089 7.24062 7.63811 7.68852 7.95030 7.97262 8.10814 8.35983
8.66314 9.30523 9.94229 10.49464 11.35568
Molecular weight = 337.19amu
Principal moments of inertia in cm(-1)
A = 0.014893 B = 0.002935 C = 0.002729
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1879.575355 B = 9538.088817 C =10257.837879
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.354 6.354
3 C 0.047 3.953
4 C 0.144 3.856
5 N -0.572 5.572
6 C -0.232 4.232
7 H 0.055 0.945
8 C 0.020 3.980
9 N -0.893 5.893
10 Si 0.893 3.107
11 H -0.278 1.278
12 H -0.295 1.295
13 H -0.290 1.290
14 C 0.177 3.823
15 C -0.140 4.140
16 C 0.116 3.884
17 N -0.602 5.602
18 C 0.525 3.475
19 O -0.543 6.543
20 C -0.050 4.050
21 C 0.255 3.745
22 N -0.532 5.532
23 C 0.261 3.739
24 N -0.487 5.487
25 H 0.440 0.560
26 N -0.308 5.308
27 C 0.104 3.896
28 C -0.134 4.134
29 H 0.028 0.972
30 H 0.073 0.927
31 H 0.025 0.975
32 H 0.022 0.978
33 H 0.026 0.974
34 H 0.103 0.897
35 H 0.039 0.961
36 H 0.251 0.749
37 H 0.046 0.954
38 H 0.064 0.936
39 H 0.068 0.932
40 H 0.060 0.940
41 H 0.082 0.918
42 H 0.116 0.884
43 H 0.125 0.875
44 H 0.222 0.778
45 H 0.077 0.923
46 H 0.065 0.935
47 H 0.076 0.924
48 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.515 7.377 -14.123 16.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.271 6.271
3 C -0.033 4.033
4 C 0.017 3.983
5 N -0.291 5.291
6 C -0.361 4.361
7 H 0.073 0.927
8 C -0.180 4.180
9 N -0.537 5.537
10 Si 0.724 3.276
11 H -0.203 1.203
12 H -0.222 1.222
13 H -0.217 1.217
14 C 0.070 3.930
15 C -0.180 4.180
16 C -0.007 4.007
17 N -0.336 5.336
18 C 0.311 3.689
19 O -0.421 6.421
20 C -0.093 4.093
21 C -0.029 4.029
22 N -0.259 5.259
23 C -0.038 4.038
24 N -0.205 5.205
25 H 0.285 0.715
26 N -0.137 5.137
27 C -0.019 4.019
28 C -0.174 4.174
29 H 0.047 0.953
30 H 0.092 0.908
31 H 0.044 0.956
32 H 0.040 0.960
33 H 0.045 0.955
34 H 0.120 0.880
35 H 0.057 0.943
36 H 0.060 0.940
37 H 0.064 0.936
38 H 0.083 0.917
39 H 0.087 0.913
40 H 0.078 0.922
41 H 0.101 0.899
42 H 0.134 0.866
43 H 0.143 0.857
44 H 0.238 0.762
45 H 0.095 0.905
46 H 0.084 0.916
47 H 0.094 0.906
48 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 2.259 7.521 -14.044 16.091
hybrid contribution -0.505 -0.769 -0.567 1.081
sum 1.754 6.752 -14.611 16.191
Atomic orbital electron populations
1.22628 0.84354 1.01434 0.98339 1.88220 1.16437 1.27683 1.94796
1.23461 0.99041 0.84088 0.96680 1.21032 0.87359 0.96541 0.93338
1.43729 1.75265 1.02721 1.07342 1.18753 1.35374 0.81539 1.00465
0.92721 1.25003 0.96512 0.97351 0.99096 1.69959 1.34836 1.35448
1.13431 0.86383 0.77326 0.86153 0.77740 1.20304 1.22233 1.21676
1.20326 0.91186 0.93410 0.88101 1.22403 1.00440 1.00142 0.95058
1.21654 0.81138 0.99314 0.98567 1.48087 1.08297 1.68830 1.08343
1.20051 0.90107 0.76577 0.82165 1.90686 1.51207 1.51162 1.49054
1.19970 0.96400 1.05262 0.87639 1.23367 0.97063 0.86475 0.95968
1.70390 1.23591 1.24562 1.07391 1.26071 0.96076 0.88556 0.93111
1.48071 1.57072 1.05825 1.09494 0.71482 1.77961 1.26261 1.18731
0.90734 1.21886 0.90146 1.00454 0.89382 1.22194 0.99566 1.00137
0.95459 0.95338 0.90791 0.95608 0.95955 0.95538 0.87974 0.94304
0.93952 0.93594 0.91742 0.91341 0.92176 0.89911 0.86588 0.85735
0.76160 0.90451 0.91633 0.90591 0.90772
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.50 11.01 101.05 1.11 1.61 16
2 O -0.35 -7.70 10.18 -35.23 -0.36 -8.06 16
3 C 0.05 0.92 6.28 37.16 0.23 1.15 16
4 C 0.14 3.19 5.70 -4.05 -0.02 3.16 16
5 N -0.57 -13.06 2.34 -165.62 -0.39 -13.44 16
6 C -0.23 -6.02 7.60 -15.06 -0.11 -6.14 16
7 H 0.06 1.49 7.09 -52.49 -0.37 1.12 16
8 C 0.02 0.53 4.97 -17.43 -0.09 0.44 16
9 N -0.89 -24.88 11.47 55.49 0.64 -24.24 16
10 Si 0.89 22.17 29.60 -169.99 -5.03 17.14 16
11 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16
12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
14 C 0.18 3.33 2.60 -67.88 -0.18 3.16 16
15 C -0.14 -2.51 5.38 -26.61 -0.14 -2.65 16
16 C 0.12 1.81 6.43 -3.71 -0.02 1.78 16
17 N -0.60 -9.06 2.98 -173.04 -0.52 -9.57 16
18 C 0.52 8.41 7.69 -10.99 -0.08 8.33 16
19 O -0.54 -10.72 15.45 5.56 0.09 -10.64 16
20 C -0.05 -0.65 4.67 -29.04 -0.14 -0.78 16
21 C 0.25 3.66 6.63 -156.85 -1.04 2.62 16
22 N -0.53 -7.46 11.19 -11.98 -0.13 -7.60 16
23 C 0.26 2.45 13.13 -90.66 -1.19 1.26 16
24 N -0.49 -4.50 7.45 29.53 0.22 -4.28 16
25 H 0.44 2.18 8.96 -182.33 -1.63 0.55 16
26 N -0.31 -4.18 12.80 32.42 0.41 -3.77 16
27 C 0.10 1.38 6.31 -3.93 -0.02 1.36 16
28 C -0.13 -2.33 5.21 -26.83 -0.14 -2.47 16
29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16
32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16
33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
34 H 0.10 2.65 5.54 -51.93 -0.29 2.36 16
35 H 0.04 0.78 7.88 -51.93 -0.41 0.37 16
36 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16
37 H 0.05 0.81 7.77 -51.94 -0.40 0.40 16
38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
39 H 0.07 1.41 7.24 -51.93 -0.38 1.04 16
40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
41 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16
42 H 0.12 1.16 7.95 -51.93 -0.41 0.75 16
43 H 0.12 1.44 7.68 -51.93 -0.40 1.05 16
44 H 0.22 0.86 8.06 -52.49 -0.42 0.43 16
45 H 0.08 0.83 5.94 -51.93 -0.31 0.53 16
46 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
48 H 0.07 1.49 7.61 -51.93 -0.40 1.09 16
LS Contribution 388.71 15.07 5.86 5.86
Total: -1.00 -35.92 388.71 -9.77 -45.69
By element:
Atomic # 1 Polarization: 8.80 SS G_CDS: -8.72 Total: 0.08 kcal
Atomic # 6 Polarization: 14.67 SS G_CDS: -1.84 Total: 12.83 kcal
Atomic # 7 Polarization: -63.14 SS G_CDS: 0.23 Total: -62.90 kcal
Atomic # 8 Polarization: -18.43 SS G_CDS: -0.27 Total: -18.70 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -35.92 -9.77 -45.69 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699690009.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.418 kcal
(2) G-P(sol) polarization free energy of solvation -35.919 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.692 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.726 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds