Wall clock time and date at job start Tue Mar 31 2020 21:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00185 * 2 1 4 4 C 1.52998 * 109.47379 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47252 * 65.00102 * 4 3 2 6 6 C 1.36939 * 120.00161 * 269.99956 * 5 4 3 7 7 H 1.08000 * 120.00298 * 141.79433 * 6 5 4 8 8 C 1.38810 * 119.99964 * 321.80384 * 6 5 4 9 9 N 1.31616 * 119.99886 * 339.27196 * 8 6 5 10 10 Si 1.86799 * 120.00236 * 159.27390 * 8 6 5 11 11 H 1.48505 * 109.47126 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47443 * 119.99928 * 10 8 6 13 13 H 1.48507 * 109.47236 * 240.00130 * 10 8 6 14 14 C 1.46503 * 120.00051 * 89.99938 * 5 4 3 15 15 C 1.53042 * 109.46075 * 244.77285 * 14 5 4 16 16 C 1.53186 * 109.31289 * 178.63021 * 15 14 5 17 17 N 1.46928 * 108.77874 * 54.63449 * 16 15 14 18 18 C 1.34777 * 120.63164 * 126.37015 * 17 16 15 19 19 O 1.21280 * 119.99869 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99917 * 180.02562 * 18 17 16 21 21 C 1.50697 * 109.47211 * 179.97438 * 20 18 17 22 22 N 1.33246 * 125.52959 * 269.69826 * 21 20 18 23 23 C 1.30826 * 109.82822 * 179.85524 * 22 21 20 24 24 N 1.34426 * 108.08346 * 0.39756 * 23 22 21 25 25 H 0.96996 * 126.83054 * 179.79175 * 24 23 22 26 26 N 1.30718 * 125.52497 * 89.99756 * 21 20 18 27 27 C 1.46928 * 118.73550 * 306.64527 * 17 16 15 28 28 C 1.52756 * 109.00991 * 53.31052 * 27 17 16 29 29 H 1.09003 * 109.47420 * 59.99765 * 1 2 3 30 30 H 1.09000 * 109.46803 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47038 * 299.99955 * 1 2 3 32 32 H 1.08998 * 109.47103 * 60.00041 * 3 2 1 33 33 H 1.09005 * 109.47072 * 300.00707 * 3 2 1 34 34 H 1.09005 * 109.46944 * 305.00193 * 4 3 2 35 35 H 1.09000 * 109.47106 * 185.00412 * 4 3 2 36 36 H 0.97001 * 120.00170 * 180.02562 * 9 8 6 37 37 H 1.08989 * 109.45904 * 4.75002 * 14 5 4 38 38 H 1.08997 * 109.49760 * 58.67685 * 15 14 5 39 39 H 1.09007 * 109.52629 * 298.59523 * 15 14 5 40 40 H 1.09003 * 109.58764 * 294.84904 * 16 15 14 41 41 H 1.08996 * 109.70445 * 174.49322 * 16 15 14 42 42 H 1.09001 * 109.47625 * 299.99723 * 20 18 17 43 43 H 1.09005 * 109.46902 * 60.00073 * 20 18 17 44 44 H 1.08001 * 125.96155 * 180.19571 * 23 22 21 45 45 H 1.09002 * 109.58545 * 173.13972 * 27 17 16 46 46 H 1.09000 * 109.59119 * 293.56506 * 27 17 16 47 47 H 1.09003 * 109.56794 * 185.55027 * 28 27 17 48 48 H 1.09004 * 109.39281 * 65.50992 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8119 -1.3094 -2.2439 8 6 4.5856 -1.5184 -0.2564 9 7 5.3006 -0.9143 0.6689 10 14 4.2288 -3.3466 -0.1157 11 1 3.4099 -3.7819 -1.2756 12 1 5.5078 -4.1010 -0.1012 13 1 3.4843 -3.6103 1.1419 14 6 4.2864 1.4007 -2.4148 15 6 3.2911 1.1023 -3.5384 16 6 3.5977 2.0027 -4.7392 17 7 5.0061 1.8235 -5.1173 18 6 5.3422 1.5048 -6.3830 19 8 4.4783 1.3638 -7.2225 20 6 6.7912 1.3238 -6.7551 21 6 6.8945 0.9735 -8.2171 22 7 6.8852 -0.2602 -8.7203 23 6 6.9888 -0.2088 -10.0235 24 7 7.0766 1.0831 -10.3844 25 1 7.1655 1.4303 -11.2857 26 7 7.0133 1.8306 -9.1969 27 6 6.0409 1.9921 -4.0879 28 6 5.7073 1.0973 -2.8957 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5681 0.8410 35 1 3.9785 2.1765 0.0890 36 1 5.6425 -1.4185 1.4237 37 1 4.2143 2.4517 -2.1354 38 1 2.2775 1.2964 -3.1876 39 1 3.3794 0.0572 -3.8354 40 1 3.4215 3.0441 -4.4695 41 1 2.9567 1.7288 -5.5771 42 1 7.3339 2.2495 -6.5637 43 1 7.2219 0.5200 -6.1579 44 1 7.0046 -1.0565 -10.6924 45 1 7.0113 1.7087 -4.4954 46 1 6.0680 3.0326 -3.7640 47 1 6.4134 1.2877 -2.0874 48 1 5.7735 0.0521 -3.1980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699690009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:43 Heat of formation + Delta-G solvation = 12.129900 kcal Electronic energy + Delta-G solvation = -30209.863787 eV Core-core repulsion = 26108.917318 eV Total energy + Delta-G solvation = -4100.946470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.06995 -41.11542 -39.15865 -38.26783 -36.49108 -34.44225 -33.70971 -32.79161 -32.25002 -31.97127 -30.10616 -29.46261 -27.13969 -26.37176 -24.79826 -24.07971 -23.69297 -22.60209 -21.90973 -21.15519 -19.92385 -19.20714 -18.53637 -17.92923 -17.26380 -16.95236 -16.66063 -16.57175 -16.50122 -16.11012 -15.84661 -15.65400 -15.45060 -15.18457 -14.89306 -14.63044 -14.45769 -14.11311 -13.77842 -13.39590 -13.25574 -13.14450 -13.11385 -12.97700 -12.87035 -12.71560 -12.54460 -12.30874 -12.20117 -12.01202 -11.75587 -11.48699 -11.45225 -11.23470 -11.08481 -11.05538 -10.91261 -10.54951 -10.36456 -10.27667 -9.59468 -8.37871 -7.67237 -5.25235 0.64727 1.45478 1.50586 1.57942 1.59264 1.71383 1.86544 2.24256 2.60878 3.17256 3.24806 3.43168 3.57544 3.68793 3.68951 4.05061 4.14675 4.22411 4.31817 4.39909 4.43788 4.44995 4.51245 4.55168 4.56212 4.65475 4.69651 4.77647 4.83849 4.87826 4.88953 4.95684 4.96123 5.06580 5.19922 5.22493 5.26902 5.34787 5.52501 5.69005 5.75217 5.81071 5.91870 6.28309 6.43934 6.56128 6.72919 7.11743 7.14732 7.35079 8.04472 8.53109 9.28480 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002935 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.575355 B = 9538.088817 C =10257.837879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.054 3.946 4 C 0.141 3.859 5 N -0.584 5.584 6 C -0.216 4.216 7 H 0.034 0.966 8 C -0.022 4.022 9 N -0.914 5.914 10 Si 0.933 3.067 11 H -0.282 1.282 12 H -0.294 1.294 13 H -0.296 1.296 14 C 0.173 3.827 15 C -0.125 4.125 16 C 0.123 3.877 17 N -0.602 5.602 18 C 0.522 3.478 19 O -0.586 6.586 20 C -0.047 4.047 21 C 0.235 3.765 22 N -0.580 5.580 23 C 0.274 3.726 24 N -0.474 5.474 25 H 0.458 0.542 26 N -0.336 5.336 27 C 0.112 3.888 28 C -0.125 4.125 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.245 0.755 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.030 0.970 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.146 0.854 43 H 0.134 0.866 44 H 0.272 0.728 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.795 9.005 -15.520 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.025 4.025 4 C 0.014 3.986 5 N -0.303 5.303 6 C -0.347 4.347 7 H 0.052 0.948 8 C -0.218 4.218 9 N -0.559 5.559 10 Si 0.764 3.236 11 H -0.207 1.207 12 H -0.222 1.222 13 H -0.223 1.223 14 C 0.066 3.934 15 C -0.165 4.165 16 C 0.000 4.000 17 N -0.334 5.334 18 C 0.310 3.690 19 O -0.467 6.467 20 C -0.089 4.089 21 C -0.049 4.049 22 N -0.309 5.309 23 C -0.024 4.024 24 N -0.194 5.194 25 H 0.307 0.693 26 N -0.166 5.166 27 C -0.010 4.010 28 C -0.164 4.164 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.164 0.836 43 H 0.152 0.848 44 H 0.287 0.713 45 H 0.125 0.875 46 H 0.115 0.885 47 H 0.083 0.917 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.544 9.177 -15.471 18.167 hybrid contribution -0.669 -1.278 -0.231 1.461 sum 1.875 7.898 -15.702 17.676 Atomic orbital electron populations 1.22795 0.81846 1.02405 0.99964 1.88142 1.19351 1.29012 1.95165 1.23306 0.97128 0.83793 0.98268 1.20984 0.89370 0.96492 0.91711 1.43876 1.75684 1.02094 1.08656 1.18632 1.33432 0.83346 0.99260 0.94835 1.25375 0.97481 0.99376 0.99583 1.70040 1.36240 1.35864 1.13795 0.85761 0.76875 0.84028 0.76967 1.20684 1.22172 1.22339 1.20533 0.92094 0.93895 0.86868 1.22196 1.00136 0.98446 0.95764 1.21538 0.81615 1.00102 0.96737 1.48173 1.08365 1.68307 1.08596 1.20607 0.91162 0.75428 0.81820 1.90658 1.52711 1.53015 1.50312 1.20035 0.94222 1.07061 0.87543 1.23597 0.97768 0.86884 0.96628 1.70363 1.25724 1.25084 1.09771 1.26989 0.93310 0.89595 0.92507 1.48001 1.56145 1.05738 1.09513 0.69298 1.77835 1.27029 1.19921 0.91838 1.21957 0.90757 1.01067 0.87203 1.22020 0.98405 0.99099 0.96920 0.94022 0.90306 0.93491 0.93719 0.94274 0.91708 0.92402 0.94535 0.91226 0.91982 0.95080 0.89279 0.91312 0.83578 0.84810 0.71256 0.87503 0.88540 0.91692 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.12 10.18 -148.98 -1.52 -18.64 16 3 C 0.05 2.04 6.28 71.98 0.45 2.49 16 4 C 0.14 6.17 5.70 86.38 0.49 6.66 16 5 N -0.58 -26.72 2.34 -677.89 -1.59 -28.30 16 6 C -0.22 -11.49 7.60 84.03 0.64 -10.86 16 7 H 0.03 1.92 7.09 -2.91 -0.02 1.90 16 8 C -0.02 -1.19 4.97 84.86 0.42 -0.77 16 9 N -0.91 -52.05 11.47 21.65 0.25 -51.80 16 10 Si 0.93 46.67 29.60 68.60 2.03 48.70 16 11 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 12 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 13 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 14 C 0.17 6.32 2.60 45.02 0.12 6.44 16 15 C -0.13 -4.44 5.38 30.67 0.16 -4.27 16 16 C 0.12 3.66 6.43 86.36 0.56 4.22 16 17 N -0.60 -17.09 2.98 -819.75 -2.44 -19.54 16 18 C 0.52 16.20 7.69 87.66 0.67 16.87 16 19 O -0.59 -23.13 15.45 -3.03 -0.05 -23.17 16 20 C -0.05 -1.13 4.67 29.10 0.14 -0.99 16 21 C 0.23 6.51 6.63 138.63 0.92 7.43 16 22 N -0.58 -15.68 11.19 -191.80 -2.15 -17.83 16 23 C 0.27 4.53 13.13 180.36 2.37 6.90 16 24 N -0.47 -7.84 7.45 -60.49 -0.45 -8.29 16 25 H 0.46 3.50 8.96 -213.10 -1.91 1.59 16 26 N -0.34 -8.70 12.80 -51.33 -0.66 -9.35 16 27 C 0.11 2.66 6.31 86.22 0.54 3.21 16 28 C -0.12 -4.25 5.21 30.53 0.16 -4.09 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.07 3.40 5.54 -2.38 -0.01 3.39 16 35 H 0.06 2.25 7.88 -2.39 -0.02 2.23 16 36 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.07 2.25 7.77 -2.39 -0.02 2.23 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.03 1.31 7.24 -2.38 -0.02 1.30 16 40 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.28 7.00 -2.39 -0.02 2.26 16 42 H 0.15 2.51 7.95 -2.39 -0.02 2.50 16 43 H 0.13 2.91 7.68 -2.38 -0.02 2.90 16 44 H 0.27 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.11 1.96 5.94 -2.39 -0.01 1.94 16 46 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.04 1.60 7.61 -2.38 -0.02 1.58 16 Total: -1.00 -81.78 388.71 1.39 -80.39 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -0.93 Total: 12.50 kcal Atomic # 6 Polarization: 26.44 SS G_CDS: 8.89 Total: 35.33 kcal Atomic # 7 Polarization: -128.08 SS G_CDS: -7.03 Total: -135.11 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.56 Total: -41.81 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -81.78 1.39 -80.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699690009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.520 kcal (2) G-P(sol) polarization free energy of solvation -81.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds