Wall clock time and date at job start Tue Mar 31 2020 21:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40447 * 126.82323 * 2 1 4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3 7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3 8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2 9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3 10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4 11 11 C 1.50702 * 109.46950 * 89.97979 * 10 9 8 12 12 O 1.21275 * 120.00091 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00261 * 359.97438 * 13 11 10 15 15 C 1.52992 * 109.47182 * 90.00123 * 14 13 11 16 16 O 1.42898 * 109.47260 * 64.99819 * 15 14 13 17 17 C 1.46505 * 119.99672 * 179.97438 * 13 11 10 18 18 C 1.53000 * 109.47261 * 89.99864 * 17 13 11 19 19 N 1.46496 * 109.46872 * 179.97438 * 18 17 13 20 20 C 1.36939 * 119.99817 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99858 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00350 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99704 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00308 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47040 * 60.00143 * 24 22 20 26 26 H 1.48499 * 109.47051 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46717 * 300.00025 * 24 22 20 28 28 H 1.09002 * 109.47241 * 90.02243 * 1 2 3 29 29 H 1.08996 * 109.47088 * 210.02752 * 1 2 3 30 30 H 1.09003 * 109.47136 * 330.02773 * 1 2 3 31 31 H 1.09001 * 115.54690 * 154.39168 * 5 4 3 32 32 H 1.08999 * 117.49922 * 359.97438 * 6 5 4 33 33 H 1.09000 * 117.49232 * 145.01679 * 6 5 4 34 34 H 1.08995 * 117.49902 * 214.98202 * 7 5 4 35 35 H 1.09002 * 117.49700 * 359.97241 * 7 5 4 36 36 H 1.09003 * 109.47186 * 209.97910 * 10 9 8 37 37 H 1.08998 * 109.47075 * 329.97660 * 10 9 8 38 38 H 1.09005 * 109.46527 * 210.00240 * 14 13 11 39 39 H 1.08996 * 109.46733 * 329.99905 * 14 13 11 40 40 H 1.09001 * 109.46892 * 184.99750 * 15 14 13 41 41 H 1.09001 * 109.47219 * 304.99997 * 15 14 13 42 42 H 0.96708 * 113.99522 * 179.97438 * 16 15 14 43 43 H 1.09005 * 109.47003 * 209.99875 * 17 13 11 44 44 H 1.08998 * 109.46809 * 329.99811 * 17 13 11 45 45 H 1.09000 * 109.46691 * 299.99784 * 18 17 13 46 46 H 1.09004 * 109.46970 * 59.99877 * 18 17 13 47 47 H 0.96991 * 120.00413 * 359.97438 * 19 18 17 48 48 H 0.97000 * 120.00124 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5349 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0346 0.2074 7 6 4.9764 2.4893 -1.1729 8 7 3.5096 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0002 10 6 1.8246 -2.5156 -0.0006 11 6 1.6765 -2.9964 1.4200 12 8 1.9107 -2.2444 2.3422 13 7 1.2849 -4.2624 1.6655 14 6 1.0027 -5.1710 0.5514 15 6 2.2823 -5.9138 0.1624 16 8 2.6917 -6.7554 1.2423 17 6 1.1415 -4.7299 3.0465 18 6 -0.2864 -4.4662 3.5286 19 7 -0.4299 -4.9343 4.9093 20 6 -1.6297 -4.8018 5.5560 21 1 -2.4702 -4.3526 5.0479 22 6 -1.7659 -5.2458 6.8641 23 7 -0.7417 -5.7937 7.4830 24 14 -3.4028 -5.0657 7.7459 25 1 -4.4500 -5.8117 7.0031 26 1 -3.2866 -5.6125 9.1217 27 1 -3.7727 -3.6291 7.8143 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 5.6667 1.0633 0.4268 32 1 3.5866 3.4088 0.3420 33 1 5.3748 3.5597 0.7680 34 1 5.9961 2.6559 -1.5198 35 1 4.2084 2.5044 -1.9462 36 1 0.8667 -2.5989 -0.5141 37 1 2.5669 -3.1257 -0.5152 38 1 0.2421 -5.8910 0.8537 39 1 0.6414 -4.5977 -0.3023 40 1 2.0943 -6.5228 -0.7218 41 1 3.0698 -5.1920 -0.0543 42 1 3.4984 -7.2583 1.0649 43 1 1.3485 -5.7992 3.0914 44 1 1.8451 -4.1965 3.6856 45 1 -0.4933 -3.3969 3.4837 46 1 -0.9900 -4.9996 2.8894 47 1 0.3248 -5.3381 5.3654 48 1 -0.8369 -6.1043 8.3970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700043301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:15 Heat of formation + Delta-G solvation = 52.511435 kcal Electronic energy + Delta-G solvation = -29319.902573 eV Core-core repulsion = 25220.707179 eV Total energy + Delta-G solvation = -4099.195395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32323 -39.97704 -37.48475 -37.23238 -35.63294 -34.37744 -34.03575 -32.85193 -31.45225 -29.61867 -29.25582 -27.66566 -26.91615 -23.94444 -23.70406 -23.26564 -22.63283 -21.74874 -20.79300 -20.08226 -19.00257 -17.95976 -17.25365 -17.13095 -17.04902 -16.36071 -15.91012 -15.66415 -15.37845 -14.83686 -14.70254 -14.58939 -14.09211 -13.84912 -13.71179 -13.53467 -13.41559 -13.25677 -13.13361 -12.73610 -12.60991 -12.48863 -12.32556 -11.89975 -11.72316 -11.62629 -11.21629 -11.10629 -10.91485 -10.87859 -10.76105 -10.60869 -10.23919 -10.12669 -10.07719 -9.97847 -9.75040 -9.65704 -9.29365 -8.83812 -8.56484 -6.89703 -5.72555 -3.01851 1.40007 2.12077 2.55959 2.56632 3.01772 3.46266 3.50221 3.51744 3.60017 3.74126 4.01433 4.15599 4.23336 4.35690 4.60000 4.63618 4.64236 4.73271 4.82605 4.85862 4.87710 4.95295 5.06093 5.07757 5.19994 5.22161 5.36376 5.37634 5.54362 5.56644 5.57497 5.76945 5.84331 5.91258 5.92622 6.07854 6.17634 6.23869 6.31631 6.53243 6.61701 6.76380 6.93036 7.38311 7.50829 7.71448 8.01028 8.15757 8.45839 9.56436 10.13632 10.48564 11.50260 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.002635 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.456077 B =10624.054548 C =12059.011304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.371 5.371 3 N -0.314 5.314 4 C 0.254 3.746 5 C -0.069 4.069 6 C -0.161 4.161 7 C -0.160 4.160 8 N -0.527 5.527 9 C 0.303 3.697 10 C -0.066 4.066 11 C 0.513 3.487 12 O -0.517 6.517 13 N -0.595 5.595 14 C 0.103 3.897 15 C 0.056 3.944 16 O -0.561 6.561 17 C 0.113 3.887 18 C 0.144 3.856 19 N -0.729 5.729 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.286 1.286 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.378 0.622 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.018 0.982 46 H 0.016 0.984 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 7.636 -25.343 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.161 5.161 3 N -0.142 5.142 4 C -0.027 4.027 5 C -0.090 4.090 6 C -0.199 4.199 7 C -0.198 4.198 8 N -0.254 5.254 9 C 0.026 3.974 10 C -0.109 4.109 11 C 0.298 3.702 12 O -0.392 6.392 13 N -0.328 5.328 14 C -0.021 4.021 15 C -0.023 4.023 16 O -0.367 6.367 17 C -0.009 4.009 18 C 0.016 3.984 19 N -0.374 5.374 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.740 3.260 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.213 1.213 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.225 0.775 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.218 0.782 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.430 8.877 -24.504 27.392 hybrid contribution -0.510 -0.624 0.380 0.891 sum 7.920 8.253 -24.124 26.698 Atomic orbital electron populations 1.21991 0.73671 1.05607 1.03521 1.50053 1.07846 1.03685 1.54474 1.77916 1.01301 1.07496 1.27532 1.23016 0.92411 0.89172 0.98100 1.20043 0.93495 0.89914 1.05542 1.23046 1.03844 0.93781 0.99181 1.23028 1.03063 1.01981 0.91761 1.70190 1.19371 1.10901 1.24970 1.23256 0.86162 0.91347 0.96645 1.20290 1.04536 0.88402 0.97656 1.20042 0.77891 0.82298 0.89995 1.90815 1.48605 1.54034 1.45711 1.47760 1.66820 1.10405 1.07843 1.21770 0.97005 0.93367 0.89933 1.22701 0.96786 0.93231 0.89606 1.86593 1.47823 1.61085 1.41162 1.21748 0.98739 1.00656 0.79790 1.20895 0.92942 0.96866 0.87743 1.42189 1.12738 1.73234 1.09221 1.19140 0.89424 1.33298 0.95111 0.91343 1.24754 0.97624 1.01554 0.97065 1.69655 1.29573 1.46246 1.12616 0.86244 0.83292 0.77634 0.78866 1.21277 1.21633 1.21297 0.90072 0.88941 0.88617 0.85152 0.87846 0.87843 0.87821 0.88667 0.86667 0.85387 0.88558 0.89103 0.92604 0.93497 0.77472 0.89220 0.90038 0.96393 0.96599 0.78186 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 11.16 59.85 0.67 1.49 16 2 N -0.37 -4.86 4.04 -65.09 -0.26 -5.12 16 3 N -0.31 -4.61 12.24 32.42 0.40 -4.21 16 4 C 0.25 3.70 7.69 -156.85 -1.21 2.49 16 5 C -0.07 -0.77 6.33 -91.77 -0.58 -1.35 16 6 C -0.16 -1.45 10.14 -26.69 -0.27 -1.72 16 7 C -0.16 -1.33 10.24 -26.70 -0.27 -1.60 16 8 N -0.53 -8.09 11.19 -8.16 -0.09 -8.18 16 9 C 0.30 4.08 6.48 -155.70 -1.01 3.07 16 10 C -0.07 -0.65 4.38 -29.03 -0.13 -0.78 16 11 C 0.51 7.39 7.67 -10.98 -0.08 7.30 16 12 O -0.52 -10.29 15.61 5.56 0.09 -10.20 16 13 N -0.60 -8.01 2.44 -173.68 -0.42 -8.43 16 14 C 0.10 0.91 5.62 -4.04 -0.02 0.88 16 15 C 0.06 0.42 7.38 37.15 0.27 0.70 16 16 O -0.56 -5.71 12.48 -35.23 -0.44 -6.15 16 17 C 0.11 2.01 5.34 -4.04 -0.02 1.99 16 18 C 0.14 3.07 6.58 -4.04 -0.03 3.05 16 19 N -0.73 -19.44 5.60 -59.91 -0.34 -19.78 16 20 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -29.01 13.06 55.49 0.72 -28.28 16 24 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.75 7.72 -51.93 -0.40 0.35 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.13 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.10 1.05 7.88 -51.93 -0.41 0.64 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.12 0.67 7.02 -51.93 -0.36 0.30 16 37 H 0.13 0.96 7.26 -51.93 -0.38 0.58 16 38 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.09 0.45 6.44 -51.93 -0.33 0.12 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.05 0.33 7.30 -51.93 -0.38 -0.05 16 42 H 0.38 2.23 9.12 45.56 0.42 2.64 16 43 H 0.09 1.59 7.12 -51.93 -0.37 1.22 16 44 H 0.08 1.67 7.42 -51.93 -0.39 1.28 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.38 10.75 7.67 -40.82 -0.31 10.44 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 404.44 15.07 6.09 6.09 Total: -1.00 -40.90 404.44 -8.89 -49.78 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.69 Total: 8.64 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -2.93 Total: 7.93 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: 0.01 Total: -74.01 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.35 Total: -16.36 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -40.90 -8.89 -49.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700043301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.292 kcal (2) G-P(sol) polarization free energy of solvation -40.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds