Wall clock time and date at job start Tue Mar 31 2020 21:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40447 * 126.82323 * 2 1 4 4 C 1.30714 * 106.78837 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52215 * 180.02562 * 4 3 2 6 6 C 1.53001 * 117.49676 * 8.72722 * 5 4 3 7 7 C 1.52993 * 117.50123 * 300.06745 * 5 4 3 8 8 N 1.33239 * 108.94945 * 0.02562 * 4 3 2 9 9 C 1.30829 * 109.82920 * 359.97438 * 8 4 3 10 10 C 1.50702 * 125.96102 * 179.97438 * 9 8 4 11 11 C 1.50702 * 109.46950 * 89.97979 * 10 9 8 12 12 O 1.21275 * 120.00091 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00261 * 359.97438 * 13 11 10 15 15 C 1.52992 * 109.47182 * 90.00123 * 14 13 11 16 16 O 1.42898 * 109.47260 * 64.99819 * 15 14 13 17 17 C 1.46505 * 119.99672 * 179.97438 * 13 11 10 18 18 C 1.53000 * 109.47261 * 89.99864 * 17 13 11 19 19 N 1.46496 * 109.46872 * 179.97438 * 18 17 13 20 20 C 1.36939 * 119.99817 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99858 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00350 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99704 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00308 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47040 * 60.00143 * 24 22 20 26 26 H 1.48499 * 109.47051 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46717 * 300.00025 * 24 22 20 28 28 H 1.09002 * 109.47241 * 90.02243 * 1 2 3 29 29 H 1.08996 * 109.47088 * 210.02752 * 1 2 3 30 30 H 1.09003 * 109.47136 * 330.02773 * 1 2 3 31 31 H 1.09001 * 115.54690 * 154.39168 * 5 4 3 32 32 H 1.08999 * 117.49922 * 359.97438 * 6 5 4 33 33 H 1.09000 * 117.49232 * 145.01679 * 6 5 4 34 34 H 1.08995 * 117.49902 * 214.98202 * 7 5 4 35 35 H 1.09002 * 117.49700 * 359.97241 * 7 5 4 36 36 H 1.09003 * 109.47186 * 209.97910 * 10 9 8 37 37 H 1.08998 * 109.47075 * 329.97660 * 10 9 8 38 38 H 1.09005 * 109.46527 * 210.00240 * 14 13 11 39 39 H 1.08996 * 109.46733 * 329.99905 * 14 13 11 40 40 H 1.09001 * 109.46892 * 184.99750 * 15 14 13 41 41 H 1.09001 * 109.47219 * 304.99997 * 15 14 13 42 42 H 0.96708 * 113.99522 * 179.97438 * 16 15 14 43 43 H 1.09005 * 109.47003 * 209.99875 * 17 13 11 44 44 H 1.08998 * 109.46809 * 329.99811 * 17 13 11 45 45 H 1.09000 * 109.46691 * 299.99784 * 18 17 13 46 46 H 1.09004 * 109.46970 * 59.99877 * 18 17 13 47 47 H 0.96991 * 120.00413 * 359.97438 * 19 18 17 48 48 H 0.97000 * 120.00124 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5349 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0346 0.2074 7 6 4.9764 2.4893 -1.1729 8 7 3.5096 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0002 10 6 1.8246 -2.5156 -0.0006 11 6 1.6765 -2.9964 1.4200 12 8 1.9107 -2.2444 2.3422 13 7 1.2849 -4.2624 1.6655 14 6 1.0027 -5.1710 0.5514 15 6 2.2823 -5.9138 0.1624 16 8 2.6917 -6.7554 1.2423 17 6 1.1415 -4.7299 3.0465 18 6 -0.2864 -4.4662 3.5286 19 7 -0.4299 -4.9343 4.9093 20 6 -1.6297 -4.8018 5.5560 21 1 -2.4702 -4.3526 5.0479 22 6 -1.7659 -5.2458 6.8641 23 7 -0.7417 -5.7937 7.4830 24 14 -3.4028 -5.0657 7.7459 25 1 -4.4500 -5.8117 7.0031 26 1 -3.2866 -5.6125 9.1217 27 1 -3.7727 -3.6291 7.8143 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 5.6667 1.0633 0.4268 32 1 3.5866 3.4088 0.3420 33 1 5.3748 3.5597 0.7680 34 1 5.9961 2.6559 -1.5198 35 1 4.2084 2.5044 -1.9462 36 1 0.8667 -2.5989 -0.5141 37 1 2.5669 -3.1257 -0.5152 38 1 0.2421 -5.8910 0.8537 39 1 0.6414 -4.5977 -0.3023 40 1 2.0943 -6.5228 -0.7218 41 1 3.0698 -5.1920 -0.0543 42 1 3.4984 -7.2583 1.0649 43 1 1.3485 -5.7992 3.0914 44 1 1.8451 -4.1965 3.6856 45 1 -0.4933 -3.3969 3.4837 46 1 -0.9900 -4.9996 2.8894 47 1 0.3248 -5.3381 5.3654 48 1 -0.8369 -6.1043 8.3970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700043301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:14 Heat of formation + Delta-G solvation = 20.544061 kcal Electronic energy + Delta-G solvation = -29321.288783 eV Core-core repulsion = 25220.707179 eV Total energy + Delta-G solvation = -4100.581604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.28181 -41.10517 -38.26947 -38.06411 -37.08700 -35.90869 -34.92709 -34.00252 -33.22586 -30.94444 -30.12404 -28.78991 -28.10023 -25.64983 -24.76811 -24.01556 -23.45670 -23.28160 -21.88041 -21.01532 -20.08417 -19.22607 -18.71673 -18.08827 -17.90861 -17.54477 -16.87366 -16.71173 -16.45471 -16.33457 -15.72419 -15.47431 -15.33557 -15.26955 -15.13476 -14.77098 -14.55618 -14.31978 -14.18597 -13.90135 -13.47739 -13.33118 -13.13340 -13.05419 -12.90352 -12.76500 -12.66423 -12.47045 -12.41024 -12.18150 -12.13277 -11.89308 -11.88384 -11.48845 -11.17318 -11.08222 -10.98115 -10.80800 -10.73005 -10.19765 -9.74781 -9.07766 -7.98197 -5.29515 0.42903 1.28711 1.44219 1.48472 1.49181 1.54999 1.57938 1.99051 2.54693 2.76056 2.96408 3.30256 3.34656 3.38805 3.48651 3.52061 3.86055 3.98074 4.04635 4.07715 4.14498 4.17240 4.21367 4.24215 4.30495 4.34252 4.44536 4.52789 4.55746 4.58067 4.62106 4.72386 4.73238 4.88663 4.93962 5.06425 5.09183 5.09883 5.21751 5.26126 5.35641 5.40596 5.51262 5.75518 6.22548 6.34543 7.01342 7.02365 7.06452 7.28152 8.00891 8.25356 9.25229 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.002635 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.456077 B =10624.054548 C =12059.011304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.376 5.376 3 N -0.340 5.340 4 C 0.239 3.761 5 C -0.097 4.097 6 C -0.156 4.156 7 C -0.137 4.137 8 N -0.560 5.560 9 C 0.292 3.708 10 C -0.054 4.054 11 C 0.511 3.489 12 O -0.583 6.583 13 N -0.589 5.589 14 C 0.091 3.909 15 C 0.053 3.947 16 O -0.597 6.597 17 C 0.133 3.867 18 C 0.152 3.848 19 N -0.745 5.745 20 C -0.250 4.250 21 H 0.076 0.924 22 C -0.076 4.076 23 N -0.970 5.970 24 Si 0.980 3.020 25 H -0.271 1.271 26 H -0.293 1.293 27 H -0.280 1.280 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.394 0.606 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.001 0.999 46 H 0.034 0.966 47 H 0.373 0.627 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.060 7.426 -28.291 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.166 5.166 3 N -0.169 5.169 4 C -0.042 4.042 5 C -0.118 4.118 6 C -0.194 4.194 7 C -0.175 4.175 8 N -0.288 5.288 9 C 0.015 3.985 10 C -0.095 4.095 11 C 0.299 3.701 12 O -0.463 6.463 13 N -0.321 5.321 14 C -0.030 4.030 15 C -0.025 4.025 16 O -0.405 6.405 17 C 0.009 3.991 18 C 0.024 3.976 19 N -0.388 5.388 20 C -0.382 4.382 21 H 0.094 0.906 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.808 3.192 25 H -0.197 1.197 26 H -0.219 1.219 27 H -0.206 1.206 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.151 0.849 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.183 0.817 37 H 0.177 0.823 38 H 0.107 0.893 39 H 0.158 0.842 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.243 0.757 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.019 0.981 46 H 0.052 0.948 47 H 0.205 0.795 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.418 8.645 -27.545 29.807 hybrid contribution -0.199 -0.563 1.244 1.380 sum 7.218 8.083 -26.301 28.446 Atomic orbital electron populations 1.22327 0.71596 1.05749 1.05897 1.50340 1.09082 1.03292 1.53855 1.77829 1.01729 1.08794 1.28560 1.23632 0.93352 0.89487 0.97731 1.20250 0.92648 0.90597 1.08295 1.23093 1.03713 0.92378 1.00239 1.23096 1.04304 0.99278 0.90835 1.70171 1.20855 1.11521 1.26225 1.23845 0.85958 0.92713 0.95939 1.20466 1.08031 0.86485 0.94563 1.20817 0.76299 0.81670 0.91341 1.90796 1.51517 1.55826 1.48151 1.47785 1.66136 1.11064 1.07101 1.22286 0.97906 0.93250 0.89577 1.22851 0.96109 0.93564 0.89988 1.86541 1.49055 1.61880 1.43021 1.21207 0.95519 1.00101 0.82255 1.20953 0.95521 0.95524 0.85616 1.42418 1.11815 1.73324 1.11205 1.19571 0.90345 1.32633 0.95640 0.90612 1.25680 1.01452 1.01753 0.97986 1.69829 1.31829 1.47591 1.12720 0.85126 0.79057 0.77778 0.77265 1.19661 1.21902 1.20647 0.86483 0.88245 0.89098 0.84914 0.89395 0.85765 0.85130 0.89267 0.81670 0.82335 0.89272 0.84200 0.89002 0.92815 0.75689 0.89080 0.93561 0.98125 0.94799 0.79518 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 11.16 127.77 1.43 2.77 16 2 N -0.38 -9.57 4.04 -359.86 -1.45 -11.02 16 3 N -0.34 -10.10 12.24 -51.33 -0.63 -10.73 16 4 C 0.24 7.07 7.69 138.63 1.07 8.14 16 5 C -0.10 -2.16 6.33 -11.54 -0.07 -2.23 16 6 C -0.16 -2.76 10.14 30.62 0.31 -2.45 16 7 C -0.14 -2.12 10.24 30.62 0.31 -1.80 16 8 N -0.56 -17.18 11.19 -179.72 -2.01 -19.19 16 9 C 0.29 7.55 6.48 138.23 0.90 8.44 16 10 C -0.05 -0.90 4.38 29.10 0.13 -0.77 16 11 C 0.51 14.22 7.67 87.66 0.67 14.89 16 12 O -0.58 -23.99 15.61 -3.01 -0.05 -24.03 16 13 N -0.59 -15.09 2.44 -821.81 -2.00 -17.10 16 14 C 0.09 1.29 5.62 86.38 0.49 1.77 16 15 C 0.05 0.62 7.38 71.98 0.53 1.15 16 16 O -0.60 -11.22 12.48 -148.98 -1.86 -13.08 16 17 C 0.13 4.85 5.34 86.38 0.46 5.31 16 18 C 0.15 6.54 6.58 86.38 0.57 7.11 16 19 N -0.74 -40.65 5.60 -343.45 -1.92 -42.58 16 20 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 21 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 23 N -0.97 -61.55 13.06 21.65 0.28 -61.27 16 24 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 1.43 7.72 -2.39 -0.02 1.41 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.13 2.75 8.14 -2.39 -0.02 2.74 16 32 H 0.09 1.83 7.88 -2.39 -0.02 1.81 16 33 H 0.12 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.17 1.03 7.02 -2.39 -0.02 1.01 16 37 H 0.16 1.70 7.26 -2.39 -0.02 1.68 16 38 H 0.09 1.46 8.07 -2.38 -0.02 1.44 16 39 H 0.14 0.58 6.44 -2.39 -0.02 0.57 16 40 H 0.09 0.46 8.14 -2.39 -0.02 0.45 16 41 H 0.05 0.56 7.30 -2.39 -0.02 0.55 16 42 H 0.39 4.12 9.12 -74.05 -0.68 3.44 16 43 H 0.09 3.29 7.12 -2.38 -0.02 3.27 16 44 H 0.05 2.01 7.42 -2.39 -0.02 1.99 16 45 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.37 21.71 7.67 -92.72 -0.71 21.00 16 48 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -94.39 404.44 0.08 -94.31 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.39 Total: 30.94 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 8.09 Total: 24.42 kcal Atomic # 7 Polarization: -154.15 SS G_CDS: -7.74 Total: -161.89 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.91 Total: -37.11 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -94.39 0.08 -94.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700043301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.854 kcal (2) G-P(sol) polarization free energy of solvation -94.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds