Wall clock time and date at job start Tue Mar 31 2020 20:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46902 * 110.99637 * 2 1 4 4 C 1.52994 * 109.47016 * 66.05172 * 3 2 1 5 5 C 1.53001 * 109.46878 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47057 * 179.97438 * 5 4 3 7 7 C 1.46502 * 120.00038 * 270.00335 * 6 5 4 8 8 C 1.34774 * 120.00052 * 90.00146 * 6 5 4 9 9 O 1.21626 * 119.99808 * 359.73124 * 8 6 5 10 10 C 1.47166 * 119.99891 * 179.73615 * 8 6 5 11 11 C 1.38401 * 126.88330 * 343.86261 * 10 8 6 12 12 C 1.39677 * 105.35795 * 179.97438 * 11 10 8 13 13 N 1.30864 * 107.86060 * 0.02562 * 12 11 10 14 14 N 1.28446 * 110.92795 * 359.97438 * 13 12 11 15 15 C 1.46501 * 125.18685 * 179.73271 * 14 13 12 16 16 C 1.46908 * 110.99719 * 236.04867 * 2 1 3 17 17 C 1.50694 * 109.46946 * 293.95231 * 16 2 1 18 18 O 1.21294 * 120.00414 * 0.02562 * 17 16 2 19 19 N 1.34777 * 119.99667 * 180.02562 * 17 16 2 20 20 C 1.37098 * 119.99650 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00223 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99716 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00124 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00159 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99643 * 24 22 20 26 26 H 1.48493 * 109.47269 * 210.00060 * 24 22 20 27 27 H 1.48504 * 109.46936 * 329.99952 * 24 22 20 28 28 H 1.09004 * 109.47103 * 59.99994 * 1 2 3 29 29 H 1.09001 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46749 * 299.99700 * 1 2 3 31 31 H 1.08995 * 109.47570 * 306.04412 * 3 2 1 32 32 H 1.09006 * 109.46264 * 186.05029 * 3 2 1 33 33 H 1.09001 * 109.47309 * 59.99579 * 4 3 2 34 34 H 1.08996 * 109.47003 * 299.99192 * 4 3 2 35 35 H 1.09001 * 109.47139 * 59.99910 * 5 4 3 36 36 H 1.08999 * 109.47476 * 299.99774 * 5 4 3 37 37 H 1.09000 * 109.47013 * 263.26082 * 7 6 5 38 38 H 1.09003 * 109.47413 * 23.25477 * 7 6 5 39 39 H 1.08995 * 109.47455 * 143.25492 * 7 6 5 40 40 H 1.07997 * 127.31977 * 359.97438 * 11 10 8 41 41 H 1.08003 * 126.06946 * 179.97438 * 12 11 10 42 42 H 1.08999 * 109.46692 * 85.65410 * 15 14 13 43 43 H 1.09008 * 109.46789 * 205.64599 * 15 14 13 44 44 H 1.08993 * 109.47673 * 325.64921 * 15 14 13 45 45 H 1.08997 * 109.47037 * 53.95284 * 16 2 1 46 46 H 1.08997 * 109.46706 * 173.94858 * 16 2 1 47 47 H 0.96993 * 120.00297 * 359.97438 * 19 17 16 48 48 H 0.96996 * 120.00232 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1803 3.4856 1.3185 6 7 1.8313 4.1426 2.5806 7 6 0.5748 4.8869 2.6960 8 6 2.6663 4.0623 3.6355 9 8 3.7071 3.4402 3.5412 10 6 2.3184 4.7272 4.9015 11 6 1.3601 5.7081 5.0887 12 6 1.4053 6.0143 6.4507 13 7 2.3241 5.2623 7.0009 14 7 2.8765 4.4997 6.1273 15 6 3.9465 3.5376 6.4025 16 6 1.9955 -0.7660 -1.1377 17 6 1.6370 -2.2204 -0.9730 18 8 1.0047 -2.5832 -0.0035 19 7 2.0189 -3.1180 -1.9029 20 6 1.6923 -4.4411 -1.7533 21 1 1.1293 -4.7641 -0.8901 22 6 2.0856 -5.3665 -2.7124 23 7 1.7730 -6.6348 -2.5688 24 14 3.0599 -4.8080 -4.2051 25 1 4.5121 -4.8763 -3.9022 26 1 2.7522 -5.6935 -5.3567 27 1 2.6899 -3.4100 -4.5429 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.5612 1.9274 -0.8309 32 1 3.0798 1.3444 -0.1083 33 1 2.0659 1.5014 2.1491 34 1 0.5473 2.0844 1.4265 35 1 1.7463 4.0417 0.4876 36 1 3.2646 3.4583 1.2104 37 1 0.7638 5.9472 2.5284 38 1 -0.1333 4.5222 1.9518 39 1 0.1587 4.7452 3.6934 40 1 0.7146 6.1440 4.3406 41 1 0.7916 6.7431 6.9593 42 1 3.5111 2.5954 6.7354 43 1 4.5261 3.3693 5.4947 44 1 4.5984 3.9321 7.1819 45 1 1.5611 -0.3872 -2.0628 46 1 3.0797 -0.6610 -1.1758 47 1 2.5242 -2.8279 -2.6784 48 1 2.0478 -7.2808 -3.2381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700183585.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:29 Heat of formation + Delta-G solvation = 44.411040 kcal Electronic energy + Delta-G solvation = -28637.367220 eV Core-core repulsion = 24537.820565 eV Total energy + Delta-G solvation = -4099.546654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.92470 -40.01562 -38.79706 -37.05539 -36.14496 -33.96901 -33.63778 -32.72439 -31.65974 -30.82519 -28.17564 -27.84753 -27.23798 -26.50174 -24.90430 -23.46425 -22.45559 -21.61703 -20.80525 -19.88423 -19.32391 -18.22221 -17.72663 -16.98546 -16.65886 -16.31427 -15.83560 -15.64971 -15.54311 -14.95367 -14.83701 -14.68541 -14.56690 -14.24201 -13.82246 -13.62500 -13.45116 -13.38982 -13.15670 -13.08607 -12.77478 -12.42047 -12.41535 -12.28668 -11.99644 -11.90152 -11.68764 -11.37168 -11.29207 -11.04709 -11.00673 -10.63597 -10.58839 -10.36479 -9.96489 -9.59437 -9.52510 -9.37947 -9.11887 -8.54999 -8.16508 -7.93326 -6.29747 -3.80955 0.89833 1.95053 2.25102 2.66410 2.79745 3.02994 3.07802 3.15659 3.75803 3.90222 3.98018 4.11425 4.19228 4.62304 4.67901 4.75167 4.79905 4.84017 4.86279 4.91880 5.02541 5.12737 5.13870 5.21837 5.25106 5.26365 5.27399 5.32667 5.39234 5.51578 5.60270 5.65022 5.84907 5.86556 5.95492 5.97608 6.00351 6.09754 6.24012 6.33427 6.52060 6.82979 7.18768 7.33822 7.60183 7.60944 7.73539 8.16366 8.62094 8.96975 9.44177 9.85704 10.83445 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.001823 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.966624 B =15356.071914 C =15699.971962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.131 4.131 5 C 0.119 3.881 6 N -0.598 5.598 7 C 0.061 3.939 8 C 0.589 3.411 9 O -0.534 6.534 10 C -0.036 4.036 11 C -0.203 4.203 12 C -0.006 4.006 13 N -0.279 5.279 14 N -0.256 5.256 15 C 0.076 3.924 16 C 0.043 3.957 17 C 0.453 3.547 18 O -0.559 6.559 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.014 0.986 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.173 0.827 41 H 0.187 0.813 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.094 0.906 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 29.666 9.728 31.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.169 4.169 5 C -0.004 4.004 6 N -0.330 5.330 7 C -0.082 4.082 8 C 0.377 3.623 9 O -0.411 6.411 10 C -0.164 4.164 11 C -0.232 4.232 12 C -0.182 4.182 13 N -0.112 5.112 14 N -0.043 5.043 15 C -0.064 4.064 16 C -0.088 4.088 17 C 0.239 3.761 18 O -0.441 6.441 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.032 0.968 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.191 0.809 41 H 0.204 0.796 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.112 0.888 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.853 28.262 11.726 30.610 hybrid contribution 0.013 0.869 -2.755 2.889 sum 0.866 29.131 8.971 30.493 Atomic orbital electron populations 1.22576 0.86743 1.04472 0.98911 1.61522 1.08747 1.11518 1.42484 1.22028 1.00341 0.88766 0.95852 1.21930 1.01470 0.94428 0.99109 1.21566 1.02235 0.92967 0.83610 1.47470 1.20731 1.52593 1.12195 1.22454 0.85427 0.95990 1.04282 1.16947 0.83528 0.79719 0.82147 1.90792 1.24511 1.42690 1.83116 1.21361 1.01968 1.04454 0.88661 1.22848 1.01613 1.00593 0.98102 1.23641 0.99482 1.01918 0.93129 1.73231 1.11314 1.06116 1.20498 1.45663 1.27205 1.28032 1.03449 1.22491 0.87813 0.90306 1.05762 1.21896 1.00815 0.93988 0.92119 1.19658 0.85039 0.86483 0.84940 1.90526 1.42592 1.79962 1.30972 1.42216 1.51099 1.08377 1.21480 1.19426 1.33760 0.80340 1.09711 0.86291 1.25039 0.97917 0.95141 0.98127 1.69618 1.45745 1.01136 1.35722 0.86669 0.80943 0.78661 0.83087 1.19601 1.20225 1.19561 0.96793 0.88650 0.92022 0.95102 0.90676 0.90368 0.91544 0.90084 0.89315 0.91777 0.90347 0.89511 0.80947 0.79609 0.89607 0.86436 0.88764 0.93404 0.89256 0.79741 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.96 60.07 0.54 0.86 16 2 N -0.52 -8.35 4.50 -244.36 -1.10 -9.45 16 3 C 0.06 0.69 4.96 -3.83 -0.02 0.67 16 4 C -0.13 -1.38 5.46 -26.73 -0.15 -1.53 16 5 C 0.12 0.99 5.37 -4.04 -0.02 0.97 16 6 N -0.60 -5.01 2.87 -182.94 -0.53 -5.54 16 7 C 0.06 0.29 8.74 59.85 0.52 0.82 16 8 C 0.59 6.43 7.62 -12.64 -0.10 6.33 16 9 O -0.53 -7.30 14.27 5.25 0.07 -7.23 16 10 C -0.04 -0.36 6.68 -82.06 -0.55 -0.91 16 11 C -0.20 -1.50 8.77 -38.98 -0.34 -1.84 16 12 C -0.01 -0.05 12.03 -17.43 -0.21 -0.26 16 13 N -0.28 -2.90 11.90 30.59 0.36 -2.54 16 14 N -0.26 -2.67 3.75 -63.88 -0.24 -2.91 16 15 C 0.08 0.63 11.11 59.85 0.66 1.30 16 16 C 0.04 0.73 5.45 -4.97 -0.03 0.71 16 17 C 0.45 10.38 7.47 -10.99 -0.08 10.30 16 18 O -0.56 -15.02 13.91 5.55 0.08 -14.94 16 19 N -0.59 -14.20 5.09 -10.96 -0.06 -14.26 16 20 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 21 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.89 13.96 55.50 0.77 -25.11 16 24 Si 0.88 19.44 27.74 -169.99 -4.71 14.73 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.10 1.85 5.82 -51.93 -0.30 1.55 16 30 H 0.06 0.84 6.47 -51.93 -0.34 0.51 16 31 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 32 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 35 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 36 H 0.09 0.84 7.43 -51.93 -0.39 0.46 16 37 H 0.06 0.20 7.36 -51.93 -0.38 -0.18 16 38 H 0.08 0.29 8.02 -51.93 -0.42 -0.12 16 39 H 0.09 0.41 5.36 -51.93 -0.28 0.13 16 40 H 0.17 0.71 4.93 -52.49 -0.26 0.46 16 41 H 0.19 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.12 1.08 5.91 -51.92 -0.31 0.78 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 46 H 0.09 1.33 7.93 -51.93 -0.41 0.92 16 47 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 48 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -36.69 387.11 -6.52 -43.21 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.00 Total: 8.53 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.01 Total: 9.67 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.78 Total: -59.80 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.15 Total: -22.17 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.69 -6.52 -43.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700183585.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.622 kcal (2) G-P(sol) polarization free energy of solvation -36.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds