Wall clock time and date at job start Tue Mar 31 2020 20:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46902 * 110.99637 * 2 1 4 4 C 1.52994 * 109.47016 * 66.05172 * 3 2 1 5 5 C 1.53001 * 109.46878 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47057 * 179.97438 * 5 4 3 7 7 C 1.46502 * 120.00038 * 270.00335 * 6 5 4 8 8 C 1.34774 * 120.00052 * 90.00146 * 6 5 4 9 9 O 1.21626 * 119.99808 * 359.73124 * 8 6 5 10 10 C 1.47166 * 119.99891 * 179.73615 * 8 6 5 11 11 C 1.38401 * 126.88330 * 343.86261 * 10 8 6 12 12 C 1.39677 * 105.35795 * 179.97438 * 11 10 8 13 13 N 1.30864 * 107.86060 * 0.02562 * 12 11 10 14 14 N 1.28446 * 110.92795 * 359.97438 * 13 12 11 15 15 C 1.46501 * 125.18685 * 179.73271 * 14 13 12 16 16 C 1.46908 * 110.99719 * 236.04867 * 2 1 3 17 17 C 1.50694 * 109.46946 * 293.95231 * 16 2 1 18 18 O 1.21294 * 120.00414 * 0.02562 * 17 16 2 19 19 N 1.34777 * 119.99667 * 180.02562 * 17 16 2 20 20 C 1.37098 * 119.99650 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00223 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99716 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00124 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00159 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99643 * 24 22 20 26 26 H 1.48493 * 109.47269 * 210.00060 * 24 22 20 27 27 H 1.48504 * 109.46936 * 329.99952 * 24 22 20 28 28 H 1.09004 * 109.47103 * 59.99994 * 1 2 3 29 29 H 1.09001 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46749 * 299.99700 * 1 2 3 31 31 H 1.08995 * 109.47570 * 306.04412 * 3 2 1 32 32 H 1.09006 * 109.46264 * 186.05029 * 3 2 1 33 33 H 1.09001 * 109.47309 * 59.99579 * 4 3 2 34 34 H 1.08996 * 109.47003 * 299.99192 * 4 3 2 35 35 H 1.09001 * 109.47139 * 59.99910 * 5 4 3 36 36 H 1.08999 * 109.47476 * 299.99774 * 5 4 3 37 37 H 1.09000 * 109.47013 * 263.26082 * 7 6 5 38 38 H 1.09003 * 109.47413 * 23.25477 * 7 6 5 39 39 H 1.08995 * 109.47455 * 143.25492 * 7 6 5 40 40 H 1.07997 * 127.31977 * 359.97438 * 11 10 8 41 41 H 1.08003 * 126.06946 * 179.97438 * 12 11 10 42 42 H 1.08999 * 109.46692 * 85.65410 * 15 14 13 43 43 H 1.09008 * 109.46789 * 205.64599 * 15 14 13 44 44 H 1.08993 * 109.47673 * 325.64921 * 15 14 13 45 45 H 1.08997 * 109.47037 * 53.95284 * 16 2 1 46 46 H 1.08997 * 109.46706 * 173.94858 * 16 2 1 47 47 H 0.96993 * 120.00297 * 359.97438 * 19 17 16 48 48 H 0.96996 * 120.00232 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1803 3.4856 1.3185 6 7 1.8313 4.1426 2.5806 7 6 0.5748 4.8869 2.6960 8 6 2.6663 4.0623 3.6355 9 8 3.7071 3.4402 3.5412 10 6 2.3184 4.7272 4.9015 11 6 1.3601 5.7081 5.0887 12 6 1.4053 6.0143 6.4507 13 7 2.3241 5.2623 7.0009 14 7 2.8765 4.4997 6.1273 15 6 3.9465 3.5376 6.4025 16 6 1.9955 -0.7660 -1.1377 17 6 1.6370 -2.2204 -0.9730 18 8 1.0047 -2.5832 -0.0035 19 7 2.0189 -3.1180 -1.9029 20 6 1.6923 -4.4411 -1.7533 21 1 1.1293 -4.7641 -0.8901 22 6 2.0856 -5.3665 -2.7124 23 7 1.7730 -6.6348 -2.5688 24 14 3.0599 -4.8080 -4.2051 25 1 4.5121 -4.8763 -3.9022 26 1 2.7522 -5.6935 -5.3567 27 1 2.6899 -3.4100 -4.5429 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.5612 1.9274 -0.8309 32 1 3.0798 1.3444 -0.1083 33 1 2.0659 1.5014 2.1491 34 1 0.5473 2.0844 1.4265 35 1 1.7463 4.0417 0.4876 36 1 3.2646 3.4583 1.2104 37 1 0.7638 5.9472 2.5284 38 1 -0.1333 4.5222 1.9518 39 1 0.1587 4.7452 3.6934 40 1 0.7146 6.1440 4.3406 41 1 0.7916 6.7431 6.9593 42 1 3.5111 2.5954 6.7354 43 1 4.5261 3.3693 5.4947 44 1 4.5984 3.9321 7.1819 45 1 1.5611 -0.3872 -2.0628 46 1 3.0797 -0.6610 -1.1758 47 1 2.5242 -2.8279 -2.6784 48 1 2.0478 -7.2808 -3.2381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700183585.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:27 Heat of formation + Delta-G solvation = 15.063652 kcal Electronic energy + Delta-G solvation = -28638.639818 eV Core-core repulsion = 24537.820565 eV Total energy + Delta-G solvation = -4100.819253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.56868 -40.77480 -40.45999 -38.28170 -36.99833 -35.93401 -34.32821 -33.76843 -33.53575 -31.59710 -29.52888 -28.47238 -27.96854 -27.36735 -26.53664 -24.65449 -23.15228 -22.39349 -21.74883 -21.25070 -20.54273 -20.14840 -18.37982 -17.90453 -17.59679 -17.32791 -16.88064 -16.83095 -16.56443 -16.42198 -15.96741 -15.67052 -15.48036 -15.19804 -14.99538 -14.81410 -14.67970 -14.33906 -14.28348 -14.01969 -13.78518 -13.71099 -13.40922 -13.17701 -13.00927 -12.90840 -12.72975 -12.68049 -12.47645 -12.41873 -12.32069 -11.97167 -11.65691 -11.50412 -11.46253 -11.16005 -10.37231 -10.30456 -10.23093 -9.98857 -9.74832 -9.15829 -8.40999 -6.01722 0.21033 1.29869 1.32224 1.36088 1.44608 1.65147 1.96753 2.01940 2.10936 2.23327 2.66440 3.14845 3.26778 3.33809 3.62127 3.95808 4.07296 4.09557 4.14171 4.22577 4.26843 4.32946 4.36254 4.40514 4.41967 4.50001 4.56947 4.60942 4.61638 4.65511 4.69018 4.71847 4.80850 4.84197 4.96402 5.12042 5.17362 5.29897 5.48350 5.53719 5.56612 5.70630 5.91338 6.04424 6.18268 6.26041 6.60752 6.89236 6.91047 7.07096 7.40667 7.98713 8.76769 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.001823 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.966624 B =15356.071914 C =15699.971962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.550 5.550 3 C 0.062 3.938 4 C -0.121 4.121 5 C 0.123 3.877 6 N -0.593 5.593 7 C 0.052 3.948 8 C 0.581 3.419 9 O -0.576 6.576 10 C -0.062 4.062 11 C -0.184 4.184 12 C -0.008 4.008 13 N -0.307 5.307 14 N -0.274 5.274 15 C 0.076 3.924 16 C 0.056 3.944 17 C 0.450 3.550 18 O -0.607 6.607 19 N -0.593 5.593 20 C -0.327 4.327 21 H 0.053 0.947 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.275 1.275 27 H -0.230 1.230 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.208 0.792 41 H 0.219 0.781 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.117 0.883 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 33.987 7.196 34.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.275 5.275 3 C -0.065 4.065 4 C -0.160 4.160 5 C 0.001 3.999 6 N -0.324 5.324 7 C -0.089 4.089 8 C 0.368 3.632 9 O -0.456 6.456 10 C -0.190 4.190 11 C -0.213 4.213 12 C -0.183 4.183 13 N -0.140 5.140 14 N -0.062 5.062 15 C -0.064 4.064 16 C -0.076 4.076 17 C 0.237 3.763 18 O -0.491 6.491 19 N -0.235 5.235 20 C -0.457 4.457 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.183 1.183 26 H -0.200 1.200 27 H -0.153 1.153 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.136 0.864 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.224 0.776 41 H 0.236 0.764 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.100 0.900 46 H 0.135 0.865 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.895 32.635 9.191 33.917 hybrid contribution -0.144 -0.463 -1.814 1.878 sum 0.751 32.172 7.377 33.016 Atomic orbital electron populations 1.22411 0.86882 1.01893 1.00825 1.61437 1.08988 1.14299 1.42740 1.22086 1.00705 0.86513 0.97218 1.21816 1.01520 0.95332 0.97289 1.21557 1.01637 0.92039 0.84708 1.47602 1.21326 1.52033 1.11443 1.22742 0.84030 0.97115 1.05033 1.17239 0.83432 0.79475 0.83004 1.90763 1.26373 1.44631 1.83858 1.21572 1.03317 1.05773 0.88361 1.23306 1.00455 0.98911 0.98606 1.24314 0.98804 1.01615 0.93609 1.73205 1.12490 1.06981 1.21340 1.45826 1.27884 1.28670 1.03796 1.22478 0.87885 0.90512 1.05513 1.21821 1.02676 0.89154 0.93904 1.20977 0.82883 0.89000 0.83399 1.90516 1.44233 1.81505 1.32895 1.42041 1.51876 1.06782 1.22768 1.18989 1.34798 0.83164 1.08701 0.92835 1.26139 0.98696 0.94666 1.02049 1.69805 1.47261 1.03015 1.37545 0.85346 0.78915 0.80202 0.76933 1.18267 1.19984 1.15308 0.94270 0.93406 0.90633 0.91932 0.90122 0.94316 0.90969 0.86354 0.90739 0.89203 0.88574 0.89460 0.77564 0.76407 0.89504 0.87802 0.87281 0.90036 0.86485 0.77502 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 8.96 127.69 1.14 1.97 16 2 N -0.55 -16.68 4.50 -927.03 -4.17 -20.86 16 3 C 0.06 1.26 4.96 86.30 0.43 1.68 16 4 C -0.12 -2.33 5.46 30.59 0.17 -2.16 16 5 C 0.12 1.73 5.37 86.38 0.46 2.19 16 6 N -0.59 -8.70 2.87 -850.96 -2.45 -11.15 16 7 C 0.05 0.30 8.74 127.77 1.12 1.42 16 8 C 0.58 12.52 7.62 86.59 0.66 13.18 16 9 O -0.58 -16.45 14.27 -4.11 -0.06 -16.50 16 10 C -0.06 -1.21 6.68 40.79 0.27 -0.93 16 11 C -0.18 -2.27 8.77 22.66 0.20 -2.07 16 12 C -0.01 -0.11 12.03 85.18 1.02 0.92 16 13 N -0.31 -6.22 11.90 -57.13 -0.68 -6.90 16 14 N -0.27 -5.78 3.75 -356.02 -1.33 -7.12 16 15 C 0.08 1.36 11.11 127.77 1.42 2.78 16 16 C 0.06 1.73 5.45 85.55 0.47 2.20 16 17 C 0.45 20.71 7.47 87.66 0.66 21.37 16 18 O -0.61 -34.33 13.91 -3.07 -0.04 -34.37 16 19 N -0.59 -28.35 5.09 -306.98 -1.56 -29.91 16 20 C -0.33 -19.44 10.16 84.04 0.85 -18.59 16 21 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 22 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 23 N -0.94 -57.02 13.96 21.66 0.30 -56.72 16 24 Si 0.97 39.04 27.74 68.60 1.90 40.94 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 27 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 1.90 5.82 -2.39 -0.01 1.89 16 30 H 0.08 1.98 6.47 -2.39 -0.02 1.96 16 31 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 32 H 0.08 1.56 7.93 -2.38 -0.02 1.54 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.29 6.55 -2.39 -0.02 1.28 16 35 H 0.12 0.82 8.07 -2.39 -0.02 0.81 16 36 H 0.07 1.30 7.43 -2.39 -0.02 1.28 16 37 H 0.09 0.12 7.36 -2.39 -0.02 0.10 16 38 H 0.10 0.28 8.02 -2.39 -0.02 0.26 16 39 H 0.09 0.53 5.36 -2.39 -0.01 0.52 16 40 H 0.21 0.86 4.93 -2.91 -0.01 0.84 16 41 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.10 2.14 5.91 -2.38 -0.01 2.13 16 44 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 2.05 8.12 -2.39 -0.02 2.03 16 46 H 0.12 3.04 7.93 -2.39 -0.02 3.02 16 47 H 0.39 15.33 5.76 -92.71 -0.53 14.80 16 48 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -89.44 387.11 1.65 -87.79 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.40 Total: 31.33 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 9.34 Total: 23.46 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -9.89 Total: -132.65 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -0.10 Total: -50.87 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.90 Total: 40.94 kcal Total: -89.44 1.65 -87.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700183585.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.858 kcal (2) G-P(sol) polarization free energy of solvation -89.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds