Wall clock time and date at job start Tue Mar 31 2020 21:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00034 * 2 1 4 4 H 1.08002 * 119.99675 * 183.47937 * 3 2 1 5 5 C 1.38813 * 119.99766 * 3.47530 * 3 2 1 6 6 N 1.31609 * 120.00406 * 352.64348 * 5 3 2 7 7 Si 1.86799 * 119.99557 * 172.63669 * 5 3 2 8 8 H 1.48498 * 109.47209 * 180.02562 * 7 5 3 9 9 H 1.48501 * 109.47288 * 300.00135 * 7 5 3 10 10 H 1.48504 * 109.47226 * 60.00563 * 7 5 3 11 11 C 1.46495 * 119.99648 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47305 * 267.54044 * 11 2 1 13 13 H 1.09005 * 109.87552 * 54.75639 * 12 11 2 14 14 C 1.54318 * 109.88525 * 293.73936 * 12 11 2 15 15 C 1.55155 * 102.94574 * 218.38954 * 14 12 11 16 16 C 1.54912 * 101.58034 * 35.49983 * 15 14 12 17 17 N 1.47025 * 109.88283 * 175.92943 * 12 11 2 18 18 C 1.34773 * 125.65092 * 298.33582 * 17 12 11 19 19 O 1.21283 * 119.99834 * 5.26597 * 18 17 12 20 20 C 1.50697 * 120.00354 * 185.26104 * 18 17 12 21 21 C 1.53001 * 109.47430 * 179.97438 * 20 18 17 22 22 N 1.46497 * 109.47039 * 179.97438 * 21 20 18 23 23 N 1.40164 * 126.35242 * 269.68655 * 22 21 20 24 24 C 1.29405 * 108.14143 * 179.88185 * 23 22 21 25 25 N 1.37355 * 108.82797 * 0.38594 * 24 23 22 26 26 C 1.46500 * 125.83440 * 179.77490 * 25 24 23 27 27 C 1.34820 * 108.33418 * 359.75349 * 25 24 23 28 28 O 1.21813 * 126.29877 * 180.02562 * 27 25 24 29 29 H 1.09000 * 109.47056 * 61.90579 * 1 2 3 30 30 H 1.08997 * 109.47251 * 181.90797 * 1 2 3 31 31 H 1.09005 * 109.46861 * 301.90818 * 1 2 3 32 32 H 0.97007 * 120.00446 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47824 * 27.54362 * 11 2 1 34 34 H 1.09004 * 109.47000 * 147.54342 * 11 2 1 35 35 H 1.09005 * 110.71812 * 336.75357 * 14 12 11 36 36 H 1.09005 * 110.72294 * 100.02261 * 14 12 11 37 37 H 1.08997 * 111.00459 * 153.57300 * 15 14 12 38 38 H 1.09000 * 111.00650 * 277.42567 * 15 14 12 39 39 H 1.08999 * 110.36385 * 81.83405 * 16 15 14 40 40 H 1.08999 * 110.36457 * 204.04517 * 16 15 14 41 41 H 1.09000 * 109.47315 * 300.00332 * 20 18 17 42 42 H 1.09007 * 109.46881 * 60.00131 * 20 18 17 43 43 H 1.09000 * 109.47173 * 300.00456 * 21 20 18 44 44 H 1.09001 * 109.46520 * 60.00121 * 21 20 18 45 45 H 1.07995 * 125.58620 * 180.14245 * 24 23 22 46 46 H 1.09003 * 109.47165 * 269.97797 * 26 25 24 47 47 H 1.09001 * 109.47124 * 29.96946 * 26 25 24 48 48 H 1.09000 * 109.47602 * 149.97549 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2282 1.1867 -0.0568 5 6 1.4575 2.3869 0.0729 6 7 0.1437 2.3950 -0.0040 7 14 2.3909 3.9916 0.2802 8 1 1.4283 5.1212 0.3310 9 1 3.1720 3.9505 1.5426 10 1 3.3145 4.1790 -0.8675 11 6 2.1974 -1.2687 0.0006 12 6 2.5061 -1.6789 1.4419 13 1 1.5849 -1.7090 2.0239 14 6 3.4932 -0.6748 2.0734 15 6 4.4171 -1.5847 2.9253 16 6 4.5006 -2.8557 2.0435 17 7 3.1549 -2.9981 1.4583 18 6 2.6098 -4.1472 1.0128 19 8 1.5292 -4.1323 0.4621 20 6 3.3427 -5.4508 1.1986 21 6 2.5116 -6.5919 0.6087 22 7 3.2245 -7.8590 0.7888 23 7 4.1333 -8.4359 -0.1089 24 6 4.5527 -9.5486 0.4016 25 7 3.9408 -9.7372 1.6168 26 6 4.1423 -10.8806 2.5102 27 6 3.1234 -8.6900 1.8471 28 8 2.4231 -8.5244 2.8299 29 1 -0.3633 0.4839 -0.9066 30 1 -0.3633 -1.0271 0.0342 31 1 -0.3633 0.5432 0.8724 32 1 -0.3400 3.2344 0.0466 33 1 1.5900 -2.0393 -0.4743 34 1 3.1301 -1.1501 -0.5510 35 1 4.0649 -0.1589 1.3019 36 1 2.9654 0.0391 2.7059 37 1 5.4007 -1.1326 3.0530 38 1 3.9632 -1.8081 3.8907 39 1 5.2441 -2.7239 1.2575 40 1 4.7446 -3.7253 2.6537 41 1 4.3058 -5.4018 0.6904 42 1 3.5018 -5.6298 2.2620 43 1 1.5488 -6.6407 1.1172 44 1 2.3522 -6.4131 -0.4547 45 1 5.2639 -10.2208 -0.0550 46 1 3.4229 -11.6627 2.2673 47 1 5.1541 -11.2661 2.3844 48 1 3.9999 -10.5640 3.5434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700357580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:58 Heat of formation + Delta-G solvation = 53.159344 kcal Electronic energy + Delta-G solvation = -29676.630586 eV Core-core repulsion = 25577.463287 eV Total energy + Delta-G solvation = -4099.167299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.69731 -39.97188 -37.55091 -37.45080 -35.86185 -35.26449 -33.05707 -31.63012 -31.28226 -30.00754 -28.86251 -27.77728 -25.85221 -25.30681 -24.91899 -22.94689 -22.29231 -21.36065 -21.14537 -20.10584 -18.62266 -17.96680 -17.09685 -16.92555 -16.71754 -16.38106 -15.95064 -15.83086 -15.25967 -14.79338 -14.69973 -14.43713 -14.05206 -13.60049 -13.39519 -13.25658 -13.18685 -13.04098 -12.87315 -12.73347 -12.50310 -12.38054 -12.19483 -12.00170 -11.73101 -11.42057 -11.11432 -10.91563 -10.86889 -10.68928 -10.51123 -10.43235 -10.41328 -10.26780 -10.09164 -9.80333 -9.65257 -9.41978 -8.84798 -8.54040 -8.31148 -6.80728 -5.56291 -2.98050 1.44941 1.62757 2.39119 2.76377 2.81900 3.25335 3.41951 3.46574 3.48191 4.09492 4.35243 4.55206 4.59206 4.62420 4.70263 4.75673 4.79765 4.94333 5.04170 5.13900 5.20544 5.29006 5.40681 5.47659 5.56107 5.60424 5.69003 5.72123 5.75126 5.86310 5.92819 6.01154 6.12342 6.21883 6.37534 6.43530 6.63220 6.71748 6.87682 6.97773 7.05593 7.31485 7.74878 7.76505 7.79465 7.82308 8.04241 8.37636 8.46482 9.34819 9.98880 10.43725 11.42906 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.002257 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.608062 B =12401.175454 C =12832.868743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.607 5.607 3 C -0.240 4.240 4 H 0.073 0.927 5 C -0.007 4.007 6 N -0.917 5.917 7 Si 0.904 3.096 8 H -0.291 1.291 9 H -0.286 1.286 10 H -0.286 1.286 11 C 0.149 3.851 12 C 0.115 3.885 13 H 0.068 0.932 14 C -0.107 4.107 15 C -0.139 4.139 16 C 0.100 3.900 17 N -0.610 5.610 18 C 0.532 3.468 19 O -0.536 6.536 20 C -0.154 4.154 21 C 0.176 3.824 22 N -0.449 5.449 23 N -0.278 5.278 24 C 0.249 3.751 25 N -0.564 5.564 26 C 0.099 3.901 27 C 0.641 3.359 28 O -0.552 6.552 29 H 0.038 0.962 30 H -0.006 1.006 31 H 0.043 0.957 32 H 0.249 0.751 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.230 0.770 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.041 -25.973 4.727 29.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.330 5.330 3 C -0.369 4.369 4 H 0.091 0.909 5 C -0.203 4.203 6 N -0.565 5.565 7 Si 0.735 3.265 8 H -0.217 1.217 9 H -0.212 1.212 10 H -0.213 1.213 11 C 0.020 3.980 12 C 0.010 3.990 13 H 0.087 0.913 14 C -0.145 4.145 15 C -0.177 4.177 16 C -0.024 4.024 17 N -0.345 5.345 18 C 0.319 3.681 19 O -0.413 6.413 20 C -0.195 4.195 21 C 0.055 3.945 22 N -0.270 5.270 23 N -0.098 5.098 24 C -0.050 4.050 25 N -0.294 5.294 26 C -0.043 4.043 27 C 0.341 3.659 28 O -0.425 6.425 29 H 0.057 0.943 30 H 0.012 0.988 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.247 0.753 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.773 -25.033 4.300 28.430 hybrid contribution 0.691 0.397 0.837 1.156 sum 13.464 -24.636 5.137 28.541 Atomic orbital electron populations 1.21045 0.81480 0.93207 1.01696 1.44006 1.02477 1.00355 1.86185 1.19236 0.90716 0.83623 1.43346 0.90908 1.24858 0.95642 0.97716 1.02078 1.70236 1.05138 1.24637 1.56444 0.86325 0.78574 0.83623 0.77992 1.21734 1.21229 1.21261 1.21049 0.96121 0.88724 0.92146 1.22730 0.95397 0.79345 1.01530 0.91345 1.22568 0.96419 0.96529 0.98995 1.22847 1.00883 0.95493 0.98468 1.22307 0.84865 0.98686 0.96513 1.48723 1.16697 1.08168 1.60891 1.19783 0.85809 0.83881 0.78649 1.90740 1.21742 1.86475 1.42329 1.22001 1.00942 0.92782 1.03764 1.21239 0.93336 0.75847 1.04042 1.49082 1.40563 1.21077 1.16307 1.77035 1.07762 1.08478 1.16560 1.25943 0.98345 0.96045 0.84643 1.45966 1.40934 1.22409 1.20050 1.21816 1.02858 0.85610 0.94043 1.16829 0.82935 0.81386 0.84787 1.91110 1.44455 1.77180 1.29725 0.94319 0.98768 0.93807 0.93992 0.92572 0.94272 0.90123 0.89964 0.90313 0.91165 0.91411 0.91399 0.88400 0.88760 0.87693 0.87583 0.75345 0.90884 0.89323 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.54 8.99 59.85 0.54 5.08 16 2 N -0.61 -15.76 2.89 -181.12 -0.52 -16.29 16 3 C -0.24 -6.51 8.62 -15.06 -0.13 -6.64 16 4 H 0.07 1.89 6.89 -52.49 -0.36 1.52 16 5 C -0.01 -0.19 5.44 -17.43 -0.09 -0.29 16 6 N -0.92 -27.11 9.46 55.49 0.52 -26.58 16 7 Si 0.90 21.93 29.56 -169.99 -5.02 16.91 16 8 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 9 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.15 3.28 5.16 -4.05 -0.02 3.26 16 12 C 0.11 2.18 3.15 -66.96 -0.21 1.96 16 13 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 14 C -0.11 -1.82 5.46 -24.90 -0.14 -1.95 16 15 C -0.14 -1.73 7.09 -24.58 -0.17 -1.90 16 16 C 0.10 1.19 6.74 -2.53 -0.02 1.17 16 17 N -0.61 -9.58 3.06 -163.02 -0.50 -10.08 16 18 C 0.53 8.43 7.67 -10.99 -0.08 8.35 16 19 O -0.54 -10.48 14.78 5.56 0.08 -10.40 16 20 C -0.15 -1.83 4.95 -27.88 -0.14 -1.97 16 21 C 0.18 2.17 5.68 -4.04 -0.02 2.15 16 22 N -0.45 -5.26 3.63 -65.12 -0.24 -5.49 16 23 N -0.28 -2.64 12.53 29.87 0.37 -2.27 16 24 C 0.25 1.41 12.66 -89.12 -1.13 0.28 16 25 N -0.56 -4.25 3.14 -130.10 -0.41 -4.66 16 26 C 0.10 0.35 11.05 59.85 0.66 1.01 16 27 C 0.64 7.86 8.60 -86.73 -0.75 7.11 16 28 O -0.55 -8.74 17.71 5.09 0.09 -8.65 16 29 H 0.04 1.11 7.16 -51.93 -0.37 0.74 16 30 H -0.01 -0.16 7.78 -51.93 -0.40 -0.56 16 31 H 0.04 1.24 6.92 -51.93 -0.36 0.88 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.06 1.31 6.31 -51.93 -0.33 0.98 16 34 H 0.04 0.85 7.96 -51.93 -0.41 0.44 16 35 H 0.08 1.45 6.55 -51.93 -0.34 1.11 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.09 7.96 -51.93 -0.41 0.67 16 43 H 0.10 1.42 8.07 -51.93 -0.42 1.00 16 44 H 0.11 1.30 8.10 -51.93 -0.42 0.87 16 45 H 0.23 -0.01 8.06 -52.49 -0.42 -0.43 16 46 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 48 H 0.09 0.41 8.08 -51.93 -0.42 0.00 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -36.97 390.10 -9.03 -45.99 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.58 Total: -1.99 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: -1.70 Total: 17.62 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -0.77 Total: -65.37 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.17 Total: -19.05 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.97 -9.03 -45.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700357580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.152 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds