Wall clock time and date at job start Tue Mar 31 2020 21:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00034 * 2 1 4 4 H 1.08002 * 119.99675 * 183.47937 * 3 2 1 5 5 C 1.38813 * 119.99766 * 3.47530 * 3 2 1 6 6 N 1.31609 * 120.00406 * 352.64348 * 5 3 2 7 7 Si 1.86799 * 119.99557 * 172.63669 * 5 3 2 8 8 H 1.48498 * 109.47209 * 180.02562 * 7 5 3 9 9 H 1.48501 * 109.47288 * 300.00135 * 7 5 3 10 10 H 1.48504 * 109.47226 * 60.00563 * 7 5 3 11 11 C 1.46495 * 119.99648 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47305 * 267.54044 * 11 2 1 13 13 H 1.09005 * 109.87552 * 54.75639 * 12 11 2 14 14 C 1.54318 * 109.88525 * 293.73936 * 12 11 2 15 15 C 1.55155 * 102.94574 * 218.38954 * 14 12 11 16 16 C 1.54912 * 101.58034 * 35.49983 * 15 14 12 17 17 N 1.47025 * 109.88283 * 175.92943 * 12 11 2 18 18 C 1.34773 * 125.65092 * 298.33582 * 17 12 11 19 19 O 1.21283 * 119.99834 * 5.26597 * 18 17 12 20 20 C 1.50697 * 120.00354 * 185.26104 * 18 17 12 21 21 C 1.53001 * 109.47430 * 179.97438 * 20 18 17 22 22 N 1.46497 * 109.47039 * 179.97438 * 21 20 18 23 23 N 1.40164 * 126.35242 * 269.68655 * 22 21 20 24 24 C 1.29405 * 108.14143 * 179.88185 * 23 22 21 25 25 N 1.37355 * 108.82797 * 0.38594 * 24 23 22 26 26 C 1.46500 * 125.83440 * 179.77490 * 25 24 23 27 27 C 1.34820 * 108.33418 * 359.75349 * 25 24 23 28 28 O 1.21813 * 126.29877 * 180.02562 * 27 25 24 29 29 H 1.09000 * 109.47056 * 61.90579 * 1 2 3 30 30 H 1.08997 * 109.47251 * 181.90797 * 1 2 3 31 31 H 1.09005 * 109.46861 * 301.90818 * 1 2 3 32 32 H 0.97007 * 120.00446 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47824 * 27.54362 * 11 2 1 34 34 H 1.09004 * 109.47000 * 147.54342 * 11 2 1 35 35 H 1.09005 * 110.71812 * 336.75357 * 14 12 11 36 36 H 1.09005 * 110.72294 * 100.02261 * 14 12 11 37 37 H 1.08997 * 111.00459 * 153.57300 * 15 14 12 38 38 H 1.09000 * 111.00650 * 277.42567 * 15 14 12 39 39 H 1.08999 * 110.36385 * 81.83405 * 16 15 14 40 40 H 1.08999 * 110.36457 * 204.04517 * 16 15 14 41 41 H 1.09000 * 109.47315 * 300.00332 * 20 18 17 42 42 H 1.09007 * 109.46881 * 60.00131 * 20 18 17 43 43 H 1.09000 * 109.47173 * 300.00456 * 21 20 18 44 44 H 1.09001 * 109.46520 * 60.00121 * 21 20 18 45 45 H 1.07995 * 125.58620 * 180.14245 * 24 23 22 46 46 H 1.09003 * 109.47165 * 269.97797 * 26 25 24 47 47 H 1.09001 * 109.47124 * 29.96946 * 26 25 24 48 48 H 1.09000 * 109.47602 * 149.97549 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2282 1.1867 -0.0568 5 6 1.4575 2.3869 0.0729 6 7 0.1437 2.3950 -0.0040 7 14 2.3909 3.9916 0.2802 8 1 1.4283 5.1212 0.3310 9 1 3.1720 3.9505 1.5426 10 1 3.3145 4.1790 -0.8675 11 6 2.1974 -1.2687 0.0006 12 6 2.5061 -1.6789 1.4419 13 1 1.5849 -1.7090 2.0239 14 6 3.4932 -0.6748 2.0734 15 6 4.4171 -1.5847 2.9253 16 6 4.5006 -2.8557 2.0435 17 7 3.1549 -2.9981 1.4583 18 6 2.6098 -4.1472 1.0128 19 8 1.5292 -4.1323 0.4621 20 6 3.3427 -5.4508 1.1986 21 6 2.5116 -6.5919 0.6087 22 7 3.2245 -7.8590 0.7888 23 7 4.1333 -8.4359 -0.1089 24 6 4.5527 -9.5486 0.4016 25 7 3.9408 -9.7372 1.6168 26 6 4.1423 -10.8806 2.5102 27 6 3.1234 -8.6900 1.8471 28 8 2.4231 -8.5244 2.8299 29 1 -0.3633 0.4839 -0.9066 30 1 -0.3633 -1.0271 0.0342 31 1 -0.3633 0.5432 0.8724 32 1 -0.3400 3.2344 0.0466 33 1 1.5900 -2.0393 -0.4743 34 1 3.1301 -1.1501 -0.5510 35 1 4.0649 -0.1589 1.3019 36 1 2.9654 0.0391 2.7059 37 1 5.4007 -1.1326 3.0530 38 1 3.9632 -1.8081 3.8907 39 1 5.2441 -2.7239 1.2575 40 1 4.7446 -3.7253 2.6537 41 1 4.3058 -5.4018 0.6904 42 1 3.5018 -5.6298 2.2620 43 1 1.5488 -6.6407 1.1172 44 1 2.3522 -6.4131 -0.4547 45 1 5.2639 -10.2208 -0.0550 46 1 3.4229 -11.6627 2.2673 47 1 5.1541 -11.2661 2.3844 48 1 3.9999 -10.5640 3.5434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700357580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:56 Heat of formation + Delta-G solvation = 29.137218 kcal Electronic energy + Delta-G solvation = -29677.672263 eV Core-core repulsion = 25577.463287 eV Total energy + Delta-G solvation = -4100.208977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.39972 -41.28575 -38.87997 -38.41731 -37.17257 -36.64327 -33.98570 -33.38349 -32.59385 -31.05004 -30.32825 -28.31392 -28.00407 -26.77870 -26.01411 -24.04104 -23.19770 -22.85563 -22.17240 -21.52263 -19.91670 -18.90515 -18.78387 -17.86598 -17.83077 -17.44416 -16.99888 -16.73788 -16.64278 -16.31600 -15.76168 -15.49947 -15.31674 -15.04321 -14.77085 -14.49334 -14.34240 -14.23300 -13.93332 -13.87865 -13.54293 -13.48220 -13.39982 -13.20215 -12.87738 -12.84299 -12.76731 -12.60173 -12.41163 -12.30679 -12.11635 -12.02827 -11.89521 -11.50791 -11.45681 -11.37976 -11.10839 -10.81263 -10.62101 -9.76522 -9.66334 -8.89960 -7.71364 -5.16083 0.71464 1.10680 1.48143 1.51210 1.54908 1.56302 1.57663 1.94904 2.29962 2.54587 3.36134 3.42298 3.49339 3.63742 3.70911 3.83897 3.94955 3.98326 4.08413 4.13588 4.27572 4.29645 4.34970 4.48968 4.49812 4.54827 4.64806 4.66098 4.71778 4.77721 4.83466 4.89812 4.95610 4.98393 5.09150 5.10348 5.12462 5.17644 5.41143 5.45821 5.51527 5.63546 5.70940 5.79620 6.29419 6.56864 6.64427 6.94014 7.10782 7.17453 7.88232 8.31961 9.28316 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.002257 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.608062 B =12401.175454 C =12832.868743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.622 5.622 3 C -0.239 4.239 4 H 0.087 0.913 5 C -0.069 4.069 6 N -0.952 5.952 7 Si 0.974 3.026 8 H -0.301 1.301 9 H -0.272 1.272 10 H -0.277 1.277 11 C 0.154 3.846 12 C 0.125 3.875 13 H 0.035 0.965 14 C -0.105 4.105 15 C -0.125 4.125 16 C 0.097 3.903 17 N -0.612 5.612 18 C 0.526 3.474 19 O -0.582 6.582 20 C -0.131 4.131 21 C 0.180 3.820 22 N -0.457 5.457 23 N -0.316 5.316 24 C 0.281 3.719 25 N -0.558 5.558 26 C 0.091 3.909 27 C 0.625 3.375 28 O -0.601 6.601 29 H 0.013 0.987 30 H 0.003 0.997 31 H 0.021 0.979 32 H 0.243 0.757 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.101 0.899 45 H 0.291 0.709 46 H 0.083 0.917 47 H 0.134 0.866 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.602 -28.188 5.184 34.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.346 5.346 3 C -0.368 4.368 4 H 0.105 0.895 5 C -0.261 4.261 6 N -0.602 5.602 7 Si 0.802 3.198 8 H -0.228 1.228 9 H -0.198 1.198 10 H -0.203 1.203 11 C 0.027 3.973 12 C 0.019 3.981 13 H 0.053 0.947 14 C -0.143 4.143 15 C -0.162 4.162 16 C -0.024 4.024 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.462 6.462 20 C -0.172 4.172 21 C 0.058 3.942 22 N -0.277 5.277 23 N -0.137 5.137 24 C -0.017 4.017 25 N -0.286 5.286 26 C -0.049 4.049 27 C 0.324 3.676 28 O -0.478 6.478 29 H 0.031 0.969 30 H 0.021 0.979 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.141 0.859 42 H 0.122 0.878 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.306 0.694 46 H 0.101 0.899 47 H 0.153 0.847 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.434 -27.326 4.763 32.762 hybrid contribution -0.692 0.892 0.639 1.297 sum 16.742 -26.434 5.402 31.753 Atomic orbital electron populations 1.20663 0.82544 0.92876 0.99316 1.44202 1.02196 1.01660 1.86540 1.19605 0.91367 0.83929 1.41918 0.89515 1.25720 0.96533 1.01229 1.02633 1.70448 1.06763 1.24874 1.58147 0.85222 0.77141 0.78896 0.78518 1.22760 1.19763 1.20269 1.21055 0.95376 0.86633 0.94278 1.22200 0.95406 0.82045 0.98489 0.94660 1.22425 0.96517 0.96252 0.99139 1.22840 1.01179 0.94415 0.97795 1.22618 0.82736 0.99785 0.97302 1.48757 1.18132 1.06721 1.60909 1.20527 0.85397 0.85037 0.77516 1.90721 1.23929 1.87205 1.44347 1.21839 1.00990 0.89833 1.04501 1.20979 0.92867 0.76934 1.03400 1.48984 1.41084 1.20812 1.16793 1.77076 1.08965 1.10660 1.16976 1.27181 0.96638 0.94938 0.82897 1.46183 1.39493 1.21843 1.21031 1.22178 1.05925 0.84258 0.92527 1.17150 0.83441 0.82651 0.84404 1.91056 1.46652 1.78522 1.31615 0.96899 0.97855 0.96050 0.94768 0.94439 0.93635 0.90930 0.92177 0.87207 0.90607 0.89489 0.88129 0.85937 0.87810 0.90068 0.88051 0.69417 0.89876 0.84748 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.78 8.99 127.77 1.15 11.93 16 2 N -0.62 -33.38 2.89 -726.93 -2.10 -35.48 16 3 C -0.24 -13.11 8.62 84.03 0.72 -12.38 16 4 H 0.09 4.43 6.89 -2.91 -0.02 4.41 16 5 C -0.07 -3.93 5.44 84.86 0.46 -3.47 16 6 N -0.95 -58.39 9.46 21.65 0.20 -58.18 16 7 Si 0.97 45.46 29.56 68.60 2.03 47.49 16 8 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 C 0.15 6.98 5.16 86.38 0.45 7.43 16 12 C 0.12 4.79 3.15 45.34 0.14 4.93 16 13 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 14 C -0.11 -3.48 5.46 31.78 0.17 -3.31 16 15 C -0.12 -2.70 7.09 31.99 0.23 -2.47 16 16 C 0.10 1.97 6.74 86.86 0.59 2.55 16 17 N -0.61 -18.63 3.06 -788.07 -2.42 -21.05 16 18 C 0.53 16.70 7.67 87.66 0.67 17.38 16 19 O -0.58 -23.85 14.78 -3.04 -0.04 -23.89 16 20 C -0.13 -2.97 4.95 29.85 0.15 -2.82 16 21 C 0.18 4.53 5.68 86.38 0.49 5.02 16 22 N -0.46 -10.37 3.63 -478.02 -1.73 -12.11 16 23 N -0.32 -5.25 12.53 -59.42 -0.74 -5.99 16 24 C 0.28 2.02 12.66 179.82 2.28 4.30 16 25 N -0.56 -6.91 3.14 -683.68 -2.15 -9.05 16 26 C 0.09 0.36 11.05 127.77 1.41 1.77 16 27 C 0.62 14.94 8.60 178.99 1.54 16.48 16 28 O -0.60 -19.58 17.71 -4.71 -0.08 -19.66 16 29 H 0.01 0.77 7.16 -2.39 -0.02 0.75 16 30 H 0.00 0.16 7.78 -2.39 -0.02 0.14 16 31 H 0.02 1.28 6.92 -2.38 -0.02 1.26 16 32 H 0.24 14.55 8.31 -92.70 -0.77 13.78 16 33 H 0.04 1.82 6.31 -2.38 -0.02 1.81 16 34 H 0.05 1.98 7.96 -2.38 -0.02 1.96 16 35 H 0.07 2.52 6.55 -2.38 -0.02 2.50 16 36 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.10 1.48 7.48 -2.39 -0.02 1.46 16 41 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.10 2.21 7.96 -2.38 -0.02 2.19 16 43 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 44 H 0.10 2.58 8.10 -2.39 -0.02 2.56 16 45 H 0.29 -1.92 8.06 -2.91 -0.02 -1.94 16 46 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 48 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 Total: -1.00 -87.56 390.10 4.36 -83.19 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.95 Total: 7.40 kcal Atomic # 6 Polarization: 36.89 SS G_CDS: 10.45 Total: 47.34 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -8.94 Total: -141.86 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.13 Total: -43.56 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -87.56 4.36 -83.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700357580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.331 kcal (2) G-P(sol) polarization free energy of solvation -87.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds