Wall clock time and date at job start Tue Mar 31 2020 20:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46908 * 109.46688 * 2 1 4 4 C 1.46900 * 111.00078 * 59.18795 * 3 2 1 5 5 C 1.52994 * 109.47311 * 66.04446 * 4 3 2 6 6 C 1.53001 * 109.47352 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47211 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99873 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99868 * 359.97438 * 8 7 6 10 10 C 1.47410 * 119.99941 * 179.97438 * 8 7 6 11 11 N 1.31610 * 125.86468 * 359.97438 * 10 8 7 12 12 C 1.33101 * 109.09532 * 180.02562 * 11 10 8 13 13 C 1.50704 * 125.82497 * 180.26104 * 12 11 10 14 14 C 1.35563 * 108.35198 * 0.02562 * 12 11 10 15 15 N 1.35400 * 107.15786 * 0.02562 * 14 12 11 16 16 H 0.97005 * 126.44035 * 180.02562 * 15 14 12 17 17 C 1.46897 * 110.99786 * 295.23010 * 3 2 1 18 18 C 1.50703 * 109.47376 * 288.24111 * 17 3 2 19 19 O 1.21287 * 119.99735 * 354.29767 * 18 17 3 20 20 N 1.34776 * 119.99867 * 174.30336 * 18 17 3 21 21 C 1.37095 * 119.99862 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99810 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00092 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00241 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00250 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46968 * 59.99772 * 25 23 21 27 27 H 1.48499 * 109.47396 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46807 * 300.00328 * 25 23 21 29 29 H 1.08994 * 109.47379 * 299.99072 * 1 2 3 30 30 H 1.09001 * 109.47122 * 59.99984 * 1 2 3 31 31 H 1.09008 * 109.46660 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47401 * 240.00076 * 2 1 3 33 33 H 1.09001 * 109.47494 * 119.99621 * 2 1 3 34 34 H 1.09005 * 109.47033 * 306.04537 * 4 3 2 35 35 H 1.08996 * 109.47144 * 186.05120 * 4 3 2 36 36 H 1.08998 * 109.47062 * 59.99684 * 5 4 3 37 37 H 1.09005 * 109.47339 * 300.00263 * 5 4 3 38 38 H 1.08991 * 109.47196 * 59.99748 * 6 5 4 39 39 H 1.09002 * 109.46370 * 299.99996 * 6 5 4 40 40 H 0.96994 * 120.00243 * 359.97438 * 7 6 5 41 41 H 1.09004 * 109.46976 * 269.69837 * 13 12 11 42 42 H 1.09003 * 109.47017 * 29.69438 * 13 12 11 43 43 H 1.09001 * 109.46864 * 149.69433 * 13 12 11 44 44 H 1.07996 * 126.42444 * 179.97438 * 14 12 11 45 45 H 1.08999 * 109.47197 * 48.24207 * 17 3 2 46 46 H 1.08998 * 109.46758 * 168.23698 * 17 3 2 47 47 H 0.96992 * 120.00081 * 359.97438 * 20 18 17 48 48 H 0.96999 * 120.00003 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5327 2.1156 1.1779 5 6 2.1475 1.5122 2.4423 6 6 1.6399 2.2726 3.6691 7 7 2.2291 1.6953 4.8797 8 6 1.9238 2.2080 6.0882 9 8 1.1597 3.1501 6.1736 10 6 2.5162 1.6266 7.3064 11 7 3.3521 0.6110 7.3483 12 6 3.6744 0.3643 8.6159 13 6 4.6111 -0.7152 9.0939 14 6 3.0204 1.2530 9.4034 15 7 2.2901 2.0485 8.5866 16 1 1.7155 2.7812 8.8587 17 6 1.6439 2.0762 -1.2406 18 6 2.4638 1.5369 -2.3843 19 8 3.3514 0.7385 -2.1704 20 7 2.2109 1.9420 -3.6446 21 6 2.9572 1.4518 -4.6849 22 1 3.7480 0.7414 -4.4944 23 6 2.6961 1.8690 -5.9842 24 7 1.7335 2.7331 -6.2161 25 14 3.7125 1.2006 -7.4019 26 1 3.5661 -0.2760 -7.4629 27 1 3.2387 1.7986 -8.6759 28 1 5.1412 1.5481 -7.1937 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.4466 2.0388 1.2297 35 1 1.8194 3.1642 1.0991 36 1 3.2335 1.5889 2.3904 37 1 1.8608 0.4635 2.5210 38 1 0.5540 2.1955 3.7207 39 1 1.9264 3.3214 3.5905 40 1 2.8388 0.9441 4.8116 41 1 4.0460 -1.6269 9.2880 42 1 5.3624 -0.9095 8.3283 43 1 5.1025 -0.3900 10.0109 44 1 3.0715 1.3145 10.4804 45 1 0.5856 1.9107 -1.4425 46 1 1.8302 3.1446 -1.1320 47 1 1.5009 2.5803 -3.8155 48 1 1.5516 3.0246 -7.1232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713024346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:38 Heat of formation + Delta-G solvation = -14.554415 kcal Electronic energy + Delta-G solvation = -27937.239672 eV Core-core repulsion = 23835.136084 eV Total energy + Delta-G solvation = -4102.103588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.70338 -39.72196 -38.87415 -37.17263 -35.52885 -33.83006 -33.67199 -32.37508 -31.25881 -31.18414 -30.01591 -27.89746 -26.95831 -25.27808 -24.23716 -23.67221 -22.29982 -21.00993 -20.71219 -20.07725 -18.90803 -18.88432 -17.75856 -16.83216 -16.45554 -16.44013 -16.02088 -15.75271 -15.45469 -15.01194 -14.57559 -14.49835 -14.34004 -14.18366 -13.72899 -13.52120 -13.46038 -13.22614 -13.15216 -12.98748 -12.65535 -12.23640 -12.08179 -11.88567 -11.81581 -11.53575 -11.43145 -11.15049 -11.03229 -10.80543 -10.74601 -10.64131 -10.57737 -10.41330 -10.29633 -10.16760 -9.47002 -9.42565 -8.86694 -8.40784 -7.91721 -7.78264 -6.37310 -3.77960 0.92852 2.10619 2.15459 3.01009 3.09523 3.22961 3.28222 3.32713 3.80467 3.97234 4.01360 4.27166 4.45114 4.59787 4.74789 4.82427 4.91289 5.06584 5.12634 5.26932 5.28967 5.29921 5.31370 5.41588 5.45096 5.50588 5.51716 5.55289 5.60133 5.68693 5.75091 5.92179 5.95509 6.04490 6.08670 6.14286 6.19562 6.30738 6.36745 6.56807 6.65487 7.01764 7.31613 7.40111 7.42852 7.59003 7.75535 8.11197 8.67453 9.23113 9.60173 10.12755 10.80499 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025257 B = 0.001598 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.324083 B =17516.326415 C =17977.493399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.049 3.951 3 N -0.511 5.511 4 C 0.054 3.946 5 C -0.128 4.128 6 C 0.121 3.879 7 N -0.700 5.700 8 C 0.606 3.394 9 O -0.543 6.543 10 C 0.147 3.853 11 N -0.439 5.439 12 C 0.000 4.000 13 C -0.069 4.069 14 C -0.024 4.024 15 N -0.524 5.524 16 H 0.431 0.569 17 C 0.041 3.959 18 C 0.446 3.554 19 O -0.576 6.576 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.414 0.586 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.187 0.813 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -1.872 30.280 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.079 4.079 3 N -0.233 5.233 4 C -0.075 4.075 5 C -0.166 4.166 6 C -0.002 4.002 7 N -0.351 5.351 8 C 0.389 3.611 9 O -0.420 6.420 10 C -0.114 4.114 11 N -0.163 5.163 12 C -0.134 4.134 13 C -0.127 4.127 14 C -0.163 4.163 15 N -0.126 5.126 16 H 0.270 0.730 17 C -0.090 4.090 18 C 0.231 3.769 19 O -0.459 6.459 20 N -0.204 5.204 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.204 0.796 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.269 -2.073 29.540 29.640 hybrid contribution -1.218 0.652 -0.039 1.382 sum -2.487 -1.421 29.501 29.639 Atomic orbital electron populations 1.22468 0.99096 1.02147 1.01663 1.22221 0.91757 0.90161 1.03728 1.61755 1.59193 1.02002 1.00400 1.22026 0.97389 0.98252 0.89799 1.21777 1.02553 1.00100 0.92207 1.21453 0.98296 0.98122 0.82370 1.45658 1.48294 1.36202 1.04968 1.16435 0.80607 0.82323 0.81692 1.90854 1.36427 1.28058 1.86667 1.22621 1.03958 0.98548 0.86275 1.70112 1.11534 1.12277 1.22378 1.20944 1.03171 1.00762 0.88525 1.20086 0.96825 0.94741 1.01071 1.22765 0.99539 0.96122 0.97897 1.42888 1.35609 1.27553 1.06509 0.72980 1.21919 0.97923 0.98866 0.90281 1.19770 0.87407 0.86238 0.83515 1.90509 1.34329 1.37109 1.83970 1.41866 1.32919 1.40757 1.04908 1.19641 1.14418 1.23790 0.84914 0.88022 1.25237 0.97233 0.96767 0.98720 1.69605 1.30622 1.32096 1.22176 0.85935 0.79751 0.78995 0.79618 1.19973 1.21038 1.19940 0.92765 0.92340 0.92284 0.89091 0.91068 0.94235 0.90634 0.89888 0.90883 0.91081 0.90799 0.74915 0.91076 0.90722 0.91040 0.79610 0.92964 0.89525 0.77579 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.51 9.26 37.16 0.34 -2.17 16 2 C 0.05 0.75 5.52 -3.82 -0.02 0.73 16 3 N -0.51 -8.14 4.31 -236.07 -1.02 -9.15 16 4 C 0.05 0.64 4.69 -3.83 -0.02 0.63 16 5 C -0.13 -1.29 5.25 -26.73 -0.14 -1.43 16 6 C 0.12 1.15 5.67 -4.04 -0.02 1.13 16 7 N -0.70 -6.82 5.55 -61.39 -0.34 -7.17 16 8 C 0.61 6.80 7.81 -12.53 -0.10 6.70 16 9 O -0.54 -7.33 17.09 5.27 0.09 -7.24 16 10 C 0.15 1.49 7.95 -154.52 -1.23 0.26 16 11 N -0.44 -4.55 10.89 -7.50 -0.08 -4.63 16 12 C 0.00 0.00 7.07 -83.00 -0.59 -0.59 16 13 C -0.07 -0.36 10.42 36.01 0.38 0.02 16 14 C -0.02 -0.14 11.91 -16.93 -0.20 -0.34 16 15 N -0.52 -3.78 6.14 -10.78 -0.07 -3.85 16 16 H 0.43 2.19 8.96 -40.82 -0.37 1.82 16 17 C 0.04 0.73 5.34 -4.98 -0.03 0.70 16 18 C 0.45 10.50 7.36 -10.98 -0.08 10.42 16 19 O -0.58 -15.56 14.70 5.55 0.08 -15.48 16 20 N -0.57 -14.41 5.29 -10.97 -0.06 -14.47 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 22 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 25 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.05 0.61 6.26 -51.93 -0.33 0.29 16 30 H 0.06 0.82 6.30 -51.93 -0.33 0.49 16 31 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.09 1.72 6.54 -51.93 -0.34 1.38 16 33 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 34 H 0.04 0.44 5.98 -51.93 -0.31 0.13 16 35 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.41 3.67 8.15 -40.82 -0.33 3.34 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.19 0.35 8.06 -52.49 -0.42 -0.07 16 45 H 0.05 0.85 5.97 -51.93 -0.31 0.54 16 46 H 0.09 1.39 7.81 -51.93 -0.41 0.99 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -34.75 396.68 -8.68 -43.43 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.02 Total: 12.33 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -1.95 Total: 8.05 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.84 Total: -63.23 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.17 Total: -22.72 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.75 -8.68 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713024346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.872 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds