Wall clock time and date at job start Tue Mar 31 2020 20:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46908 * 109.46688 * 2 1 4 4 C 1.46900 * 111.00078 * 59.18795 * 3 2 1 5 5 C 1.52994 * 109.47311 * 66.04446 * 4 3 2 6 6 C 1.53001 * 109.47352 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47211 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99873 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99868 * 359.97438 * 8 7 6 10 10 C 1.47410 * 119.99941 * 179.97438 * 8 7 6 11 11 N 1.31610 * 125.86468 * 359.97438 * 10 8 7 12 12 C 1.33101 * 109.09532 * 180.02562 * 11 10 8 13 13 C 1.50704 * 125.82497 * 180.26104 * 12 11 10 14 14 C 1.35563 * 108.35198 * 0.02562 * 12 11 10 15 15 N 1.35400 * 107.15786 * 0.02562 * 14 12 11 16 16 H 0.97005 * 126.44035 * 180.02562 * 15 14 12 17 17 C 1.46897 * 110.99786 * 295.23010 * 3 2 1 18 18 C 1.50703 * 109.47376 * 288.24111 * 17 3 2 19 19 O 1.21287 * 119.99735 * 354.29767 * 18 17 3 20 20 N 1.34776 * 119.99867 * 174.30336 * 18 17 3 21 21 C 1.37095 * 119.99862 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99810 * 359.97438 * 21 20 18 23 23 C 1.38942 * 120.00092 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00241 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00250 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.46968 * 59.99772 * 25 23 21 27 27 H 1.48499 * 109.47396 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46807 * 300.00328 * 25 23 21 29 29 H 1.08994 * 109.47379 * 299.99072 * 1 2 3 30 30 H 1.09001 * 109.47122 * 59.99984 * 1 2 3 31 31 H 1.09008 * 109.46660 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47401 * 240.00076 * 2 1 3 33 33 H 1.09001 * 109.47494 * 119.99621 * 2 1 3 34 34 H 1.09005 * 109.47033 * 306.04537 * 4 3 2 35 35 H 1.08996 * 109.47144 * 186.05120 * 4 3 2 36 36 H 1.08998 * 109.47062 * 59.99684 * 5 4 3 37 37 H 1.09005 * 109.47339 * 300.00263 * 5 4 3 38 38 H 1.08991 * 109.47196 * 59.99748 * 6 5 4 39 39 H 1.09002 * 109.46370 * 299.99996 * 6 5 4 40 40 H 0.96994 * 120.00243 * 359.97438 * 7 6 5 41 41 H 1.09004 * 109.46976 * 269.69837 * 13 12 11 42 42 H 1.09003 * 109.47017 * 29.69438 * 13 12 11 43 43 H 1.09001 * 109.46864 * 149.69433 * 13 12 11 44 44 H 1.07996 * 126.42444 * 179.97438 * 14 12 11 45 45 H 1.08999 * 109.47197 * 48.24207 * 17 3 2 46 46 H 1.08998 * 109.46758 * 168.23698 * 17 3 2 47 47 H 0.96992 * 120.00081 * 359.97438 * 20 18 17 48 48 H 0.96999 * 120.00003 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5327 2.1156 1.1779 5 6 2.1475 1.5122 2.4423 6 6 1.6399 2.2726 3.6691 7 7 2.2291 1.6953 4.8797 8 6 1.9238 2.2080 6.0882 9 8 1.1597 3.1501 6.1736 10 6 2.5162 1.6266 7.3064 11 7 3.3521 0.6110 7.3483 12 6 3.6744 0.3643 8.6159 13 6 4.6111 -0.7152 9.0939 14 6 3.0204 1.2530 9.4034 15 7 2.2901 2.0485 8.5866 16 1 1.7155 2.7812 8.8587 17 6 1.6439 2.0762 -1.2406 18 6 2.4638 1.5369 -2.3843 19 8 3.3514 0.7385 -2.1704 20 7 2.2109 1.9420 -3.6446 21 6 2.9572 1.4518 -4.6849 22 1 3.7480 0.7414 -4.4944 23 6 2.6961 1.8690 -5.9842 24 7 1.7335 2.7331 -6.2161 25 14 3.7125 1.2006 -7.4019 26 1 3.5661 -0.2760 -7.4629 27 1 3.2387 1.7986 -8.6759 28 1 5.1412 1.5481 -7.1937 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.4466 2.0388 1.2297 35 1 1.8194 3.1642 1.0991 36 1 3.2335 1.5889 2.3904 37 1 1.8608 0.4635 2.5210 38 1 0.5540 2.1955 3.7207 39 1 1.9264 3.3214 3.5905 40 1 2.8388 0.9441 4.8116 41 1 4.0460 -1.6269 9.2880 42 1 5.3624 -0.9095 8.3283 43 1 5.1025 -0.3900 10.0109 44 1 3.0715 1.3145 10.4804 45 1 0.5856 1.9107 -1.4425 46 1 1.8302 3.1446 -1.1320 47 1 1.5009 2.5803 -3.8155 48 1 1.5516 3.0246 -7.1232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713024346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:36 Heat of formation + Delta-G solvation = -42.042089 kcal Electronic energy + Delta-G solvation = -27938.431627 eV Core-core repulsion = 23835.136084 eV Total energy + Delta-G solvation = -4103.295543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.28787 -40.63337 -40.36854 -38.65944 -36.46745 -35.82888 -34.24839 -33.28019 -33.14335 -31.93590 -31.27313 -28.83911 -27.93813 -26.56894 -25.73777 -24.50815 -23.25043 -21.83412 -21.28201 -21.23647 -20.56305 -19.74709 -19.59202 -17.75571 -17.52018 -17.35713 -17.17331 -16.84611 -16.54380 -16.47404 -16.05065 -15.63148 -15.33474 -15.02958 -14.97457 -14.83115 -14.61086 -14.33439 -13.99203 -13.62182 -13.59363 -13.42131 -13.17151 -13.04910 -13.00624 -12.92948 -12.71969 -12.70033 -12.40756 -12.18727 -12.11296 -11.94022 -11.56018 -11.49080 -11.32420 -11.30856 -11.19607 -10.28690 -10.26371 -9.96966 -9.40793 -9.07227 -8.43628 -5.92130 0.26986 1.40926 1.42156 1.51238 1.52224 1.53314 2.10958 2.27763 2.30010 2.47383 2.83381 3.18349 3.23279 3.47720 3.90404 3.94979 4.01108 4.11353 4.15366 4.26486 4.29997 4.35472 4.38739 4.49425 4.55789 4.60256 4.62284 4.67565 4.74786 4.85078 4.96497 4.99142 5.02130 5.07312 5.13128 5.19290 5.21069 5.29514 5.42305 5.44251 5.65129 5.93760 6.13770 6.14758 6.27209 6.30562 6.64866 6.76942 6.98878 7.16658 7.61220 8.17852 8.73560 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025257 B = 0.001598 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.324083 B =17516.326415 C =17977.493399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 N -0.531 5.531 4 C 0.055 3.945 5 C -0.115 4.115 6 C 0.128 3.872 7 N -0.695 5.695 8 C 0.604 3.396 9 O -0.574 6.574 10 C 0.112 3.888 11 N -0.461 5.461 12 C -0.030 4.030 13 C -0.066 4.066 14 C 0.003 3.997 15 N -0.517 5.517 16 H 0.440 0.560 17 C 0.054 3.946 18 C 0.443 3.557 19 O -0.615 6.615 20 N -0.577 5.577 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.418 0.582 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.231 0.769 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 -1.712 32.323 32.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.077 4.077 3 N -0.255 5.255 4 C -0.073 4.073 5 C -0.154 4.154 6 C 0.005 3.995 7 N -0.346 5.346 8 C 0.389 3.611 9 O -0.453 6.453 10 C -0.148 4.148 11 N -0.185 5.185 12 C -0.164 4.164 13 C -0.124 4.124 14 C -0.137 4.137 15 N -0.120 5.120 16 H 0.281 0.719 17 C -0.077 4.077 18 C 0.230 3.770 19 O -0.500 6.500 20 N -0.215 5.215 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.198 1.198 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.255 0.745 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.248 0.752 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.799 -1.900 31.581 31.689 hybrid contribution -1.014 0.557 -0.533 1.274 sum -2.813 -1.343 31.048 31.204 Atomic orbital electron populations 1.22377 0.96997 1.03021 1.02059 1.22123 0.93452 0.89751 1.02339 1.61683 1.60431 1.02506 1.00843 1.22105 0.98429 0.98223 0.88518 1.21625 1.01809 1.00301 0.91630 1.21357 0.98399 0.97793 0.81972 1.45634 1.48059 1.36085 1.04830 1.16620 0.80193 0.81925 0.82329 1.90823 1.37918 1.29408 1.87164 1.22376 1.05681 0.99839 0.86854 1.70048 1.11787 1.12563 1.24125 1.21546 1.04435 1.02266 0.88154 1.20151 0.96209 0.94366 1.01671 1.23498 0.96868 0.93894 0.99467 1.42972 1.35449 1.27691 1.05843 0.71915 1.21770 0.97502 0.99604 0.88851 1.20849 0.86972 0.84911 0.84249 1.90478 1.36191 1.38671 1.84703 1.41941 1.33065 1.41203 1.05322 1.19613 1.15208 1.24831 0.86549 0.90421 1.26005 0.98110 0.96688 1.00477 1.69669 1.31220 1.32361 1.23010 0.85010 0.78177 0.78393 0.76870 1.19762 1.19512 1.19812 0.90490 0.93597 0.91290 0.93551 0.89395 0.92544 0.89913 0.90830 0.90393 0.90700 0.91058 0.74487 0.90508 0.91936 0.88527 0.75234 0.91127 0.87492 0.77146 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.49 9.26 71.98 0.67 -3.82 16 2 C 0.05 1.54 5.52 86.30 0.48 2.02 16 3 N -0.53 -16.51 4.31 -900.78 -3.88 -20.39 16 4 C 0.05 1.20 4.69 86.30 0.41 1.61 16 5 C -0.12 -2.16 5.25 30.59 0.16 -2.00 16 6 C 0.13 2.29 5.67 86.38 0.49 2.78 16 7 N -0.70 -13.29 5.55 -466.41 -2.59 -15.88 16 8 C 0.60 13.49 7.81 86.66 0.68 14.17 16 9 O -0.57 -15.45 17.09 -4.05 -0.07 -15.52 16 10 C 0.11 2.21 7.95 136.28 1.08 3.30 16 11 N -0.46 -9.31 10.89 -177.63 -1.94 -11.24 16 12 C -0.03 -0.43 7.07 41.75 0.30 -0.13 16 13 C -0.07 -0.57 10.42 71.24 0.74 0.17 16 14 C 0.00 0.03 11.91 83.52 0.99 1.02 16 15 N -0.52 -6.67 6.14 -188.02 -1.16 -7.83 16 16 H 0.44 3.83 8.96 -92.70 -0.83 3.00 16 17 C 0.05 1.87 5.34 85.56 0.46 2.32 16 18 C 0.44 21.36 7.36 87.66 0.65 22.00 16 19 O -0.61 -34.48 14.70 -3.05 -0.04 -34.53 16 20 N -0.58 -30.07 5.29 -306.99 -1.62 -31.69 16 21 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 24 N -0.92 -50.28 13.05 21.66 0.28 -49.99 16 25 Si 0.99 43.53 29.55 68.60 2.03 45.55 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 29 H 0.08 1.51 6.26 -2.39 -0.01 1.50 16 30 H 0.05 1.22 6.30 -2.39 -0.02 1.21 16 31 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.05 1.81 6.54 -2.39 -0.02 1.80 16 33 H 0.09 2.30 6.51 -2.39 -0.02 2.29 16 34 H 0.06 1.07 5.98 -2.38 -0.01 1.06 16 35 H 0.08 1.71 7.86 -2.39 -0.02 1.69 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.40 6.57 -2.38 -0.02 1.38 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.42 7.34 8.15 -92.71 -0.76 6.58 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.23 -0.19 8.06 -2.91 -0.02 -0.22 16 45 H 0.07 2.21 5.97 -2.39 -0.01 2.19 16 46 H 0.11 3.28 7.81 -2.39 -0.02 3.26 16 47 H 0.39 19.55 7.90 -92.71 -0.73 18.82 16 48 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -77.64 396.68 -1.91 -79.55 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -1.29 Total: 37.13 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 8.37 Total: 24.84 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -10.90 Total: -137.03 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.11 Total: -50.05 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -77.64 -1.91 -79.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713024346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.505 kcal (2) G-P(sol) polarization free energy of solvation -77.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds