Wall clock time and date at job start Tue Mar 31 2020 20:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47267 * 2 1 4 4 C 1.46900 * 111.00186 * 76.02483 * 3 2 1 5 5 C 1.52995 * 109.47233 * 199.54775 * 4 3 2 6 6 C 1.53006 * 109.47308 * 174.89404 * 5 4 3 7 7 N 1.46498 * 109.47299 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00106 * 179.97438 * 7 6 5 9 9 O 1.21571 * 119.99596 * 0.02562 * 8 7 6 10 10 C 1.47710 * 120.00181 * 179.97438 * 8 7 6 11 11 C 1.41499 * 126.51867 * 179.71213 * 10 8 7 12 12 C 1.35364 * 105.50214 * 179.84611 * 11 10 8 13 13 N 1.35036 * 107.23048 * 0.41978 * 12 11 10 14 14 C 1.46497 * 124.88522 * 179.72296 * 13 12 11 15 15 N 1.28470 * 110.22688 * 359.72184 * 13 12 11 16 16 C 1.46904 * 111.00148 * 199.98255 * 3 2 1 17 17 C 1.50690 * 109.47151 * 66.04341 * 16 3 2 18 18 O 1.21292 * 120.00337 * 0.02562 * 17 16 3 19 19 N 1.34784 * 120.00160 * 179.97438 * 17 16 3 20 20 C 1.37094 * 119.99984 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00281 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99794 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00208 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46842 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47576 * 119.99553 * 24 22 20 27 27 H 1.48502 * 109.46904 * 240.00168 * 24 22 20 28 28 H 1.08998 * 109.46925 * 54.87166 * 1 2 3 29 29 H 1.09003 * 109.47032 * 174.87800 * 1 2 3 30 30 H 1.09000 * 109.46585 * 294.87304 * 1 2 3 31 31 H 1.09002 * 109.47428 * 239.99839 * 2 1 3 32 32 H 1.09009 * 109.47304 * 119.99968 * 2 1 3 33 33 H 1.09007 * 109.46984 * 79.55074 * 4 3 2 34 34 H 1.08997 * 109.47243 * 319.54948 * 4 3 2 35 35 H 1.09000 * 109.47377 * 54.89237 * 5 4 3 36 36 H 1.09006 * 109.47148 * 294.89041 * 5 4 3 37 37 H 1.09005 * 109.46756 * 59.99963 * 6 5 4 38 38 H 1.08997 * 109.46722 * 300.00084 * 6 5 4 39 39 H 0.97006 * 119.99978 * 0.02562 * 7 6 5 40 40 H 1.08001 * 127.25019 * 0.02562 * 11 10 8 41 41 H 1.07998 * 126.38724 * 180.13442 * 12 11 10 42 42 H 1.09003 * 109.47318 * 269.97053 * 14 13 12 43 43 H 1.08998 * 109.47309 * 29.97608 * 14 13 12 44 44 H 1.09008 * 109.46557 * 149.97166 * 14 13 12 45 45 H 1.09000 * 109.46837 * 186.04822 * 16 3 2 46 46 H 1.08999 * 109.46883 * 306.04279 * 16 3 2 47 47 H 0.97000 * 119.99512 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99811 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9279 3.5157 1.2036 6 6 1.6585 4.1498 2.5697 7 7 1.7009 5.6091 2.4477 8 6 1.4900 6.3823 3.5313 9 8 1.2651 5.8688 4.6100 10 6 1.5334 7.8537 3.4084 11 6 1.3277 8.7918 4.4475 12 6 1.4665 10.0080 3.8696 13 7 1.7295 9.8015 2.5613 14 6 1.9434 10.8609 1.5723 15 7 1.7651 8.5424 2.3088 16 6 3.4104 1.4517 -0.4687 17 6 3.4712 1.0499 -1.9197 18 8 2.4560 0.7390 -2.5061 19 7 4.6537 1.0369 -2.5664 20 6 4.7091 0.6709 -3.8864 21 1 3.8052 0.3932 -4.4083 22 6 5.9283 0.6570 -4.5529 23 7 7.0280 0.9953 -3.9181 24 14 6.0038 0.1589 -6.3518 25 1 4.6381 -0.1731 -6.8312 26 1 6.5509 1.2824 -7.1540 27 1 6.8823 -1.0291 -6.4999 28 1 -0.3633 0.5913 -0.8405 29 1 -0.3633 -1.0236 -0.0917 30 1 -0.3632 0.4323 0.9324 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.7006 1.6562 1.9689 34 1 0.9320 1.6918 1.7709 35 1 1.1677 3.8437 0.4945 36 1 2.9120 3.8218 0.8486 37 1 2.4188 3.8218 3.2787 38 1 0.6745 3.8437 2.9246 39 1 1.8801 6.0188 1.5869 40 1 1.1092 8.5818 5.4841 41 1 1.3784 10.9652 4.3621 42 1 0.9895 11.1359 1.1223 43 1 2.3789 11.7322 2.0615 44 1 2.6211 10.5028 0.7973 45 1 3.7827 2.4701 -0.3576 46 1 4.0258 0.7734 0.1223 47 1 5.4656 1.2859 -2.0976 48 1 7.8791 0.9860 -4.3836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713029788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:50 Heat of formation + Delta-G solvation = 11.896869 kcal Electronic energy + Delta-G solvation = -28099.407075 eV Core-core repulsion = 23998.450500 eV Total energy + Delta-G solvation = -4100.956575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.95072 -39.52913 -38.74322 -36.93510 -35.26454 -33.87407 -33.80377 -32.01963 -31.27287 -31.00593 -30.17981 -28.11956 -26.90120 -25.12396 -24.02263 -22.94489 -21.82967 -21.63196 -20.82427 -20.02011 -19.09561 -18.15512 -17.83271 -16.75564 -16.65955 -16.39472 -15.90327 -15.64628 -15.06932 -14.84696 -14.56682 -14.37104 -14.20713 -14.08316 -13.96363 -13.69682 -13.44287 -13.35131 -13.16113 -13.02672 -12.62912 -12.15728 -12.05657 -11.83671 -11.63860 -11.47067 -11.29380 -11.22208 -11.15328 -11.09439 -10.58078 -10.38644 -10.33124 -10.26591 -10.20277 -9.63173 -9.45298 -9.43040 -9.14340 -8.36919 -7.94573 -7.83694 -6.39753 -3.80246 1.30644 1.81702 2.08468 3.01853 3.17218 3.25598 3.27592 3.34853 3.93461 3.96864 4.03820 4.25813 4.41533 4.52504 4.58627 4.86820 4.88760 4.94077 5.02405 5.09681 5.25596 5.27447 5.33411 5.41387 5.44027 5.52328 5.61104 5.66036 5.72979 5.88409 5.94654 5.97544 6.03913 6.06198 6.14326 6.23183 6.31246 6.34462 6.38074 6.53583 6.63085 7.27973 7.37523 7.48005 7.57320 7.60483 8.06303 8.09241 8.64589 9.20690 9.57538 10.09548 10.78179 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.002063 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.691579 B =13567.431081 C =15522.810684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.121 3.879 7 N -0.715 5.715 8 C 0.604 3.396 9 O -0.536 6.536 10 C -0.018 4.018 11 C -0.179 4.179 12 C -0.021 4.021 13 N -0.284 5.284 14 C 0.085 3.915 15 N -0.260 5.260 16 C 0.043 3.957 17 C 0.444 3.556 18 O -0.575 6.575 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.022 0.978 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.408 0.592 40 H 0.163 0.837 41 H 0.183 0.817 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 17.970 15.754 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 N -0.240 5.240 4 C -0.071 4.071 5 C -0.167 4.167 6 C -0.003 4.003 7 N -0.367 5.367 8 C 0.388 3.612 9 O -0.411 6.411 10 C -0.178 4.178 11 C -0.207 4.207 12 C -0.163 4.163 13 N -0.073 5.073 14 C -0.055 4.055 15 N -0.097 5.097 16 C -0.088 4.088 17 C 0.230 3.770 18 O -0.459 6.459 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.244 0.756 40 H 0.180 0.820 41 H 0.200 0.800 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.382 17.605 14.493 24.658 hybrid contribution 1.193 0.010 0.348 1.243 sum -8.188 17.614 14.842 24.446 Atomic orbital electron populations 1.21683 0.95347 1.00962 1.01577 1.22149 0.95980 0.88284 1.01175 1.61569 1.19616 1.19274 1.23510 1.22004 1.01271 0.93580 0.90205 1.21790 1.03484 0.95581 0.95828 1.21384 1.02354 0.78398 0.98137 1.45866 1.71839 1.07202 1.11752 1.16865 0.76612 0.83607 0.84074 1.90794 1.49412 1.73764 1.27120 1.21962 1.10024 0.94682 0.91166 1.21796 1.07670 0.90294 1.00920 1.22885 1.07623 1.00965 0.84837 1.45434 1.49084 1.04598 1.08167 1.22217 1.04187 0.87456 0.91648 1.73532 1.19246 0.90661 1.26213 1.21903 0.89335 1.01762 0.95793 1.19772 0.84510 0.84743 0.88011 1.90507 1.34103 1.53074 1.68245 1.41892 1.07487 1.59620 1.11365 1.19737 0.95112 1.41672 0.86064 0.87891 1.25255 0.94832 0.97615 1.00363 1.69624 0.98695 1.48674 1.37438 0.85815 0.78499 0.78037 0.82085 1.19239 1.20790 1.20823 0.91519 0.92985 0.93807 0.88731 0.96025 0.94636 0.90485 0.90028 0.91107 0.91289 0.91167 0.75633 0.81969 0.80011 0.89555 0.88531 0.88297 0.89418 0.93568 0.77547 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.96 37.16 0.37 -1.61 16 2 C 0.05 0.84 5.18 -3.82 -0.02 0.82 16 3 N -0.52 -8.47 4.10 -236.07 -0.97 -9.44 16 4 C 0.06 0.73 4.81 -3.83 -0.02 0.72 16 5 C -0.13 -1.47 5.36 -26.73 -0.14 -1.61 16 6 C 0.12 1.33 5.67 -4.04 -0.02 1.30 16 7 N -0.72 -8.17 5.55 -61.29 -0.34 -8.51 16 8 C 0.60 7.98 7.82 -12.39 -0.10 7.88 16 9 O -0.54 -8.51 16.93 5.30 0.09 -8.42 16 10 C -0.02 -0.21 7.13 -82.77 -0.59 -0.80 16 11 C -0.18 -1.71 10.81 -39.37 -0.43 -2.13 16 12 C -0.02 -0.14 11.46 -17.17 -0.20 -0.34 16 13 N -0.28 -2.17 3.70 -68.13 -0.25 -2.42 16 14 C 0.09 0.26 11.31 59.85 0.68 0.94 16 15 N -0.26 -2.77 11.67 33.42 0.39 -2.38 16 16 C 0.04 0.78 5.28 -4.98 -0.03 0.75 16 17 C 0.44 10.43 7.29 -10.99 -0.08 10.35 16 18 O -0.58 -15.35 14.12 5.55 0.08 -15.27 16 19 N -0.57 -14.35 5.29 -10.97 -0.06 -14.41 16 20 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.54 6.91 -51.93 -0.36 0.18 16 31 H 0.09 1.88 5.85 -51.93 -0.30 1.58 16 32 H 0.02 0.32 8.00 -51.92 -0.42 -0.10 16 33 H 0.04 0.42 8.00 -51.93 -0.42 0.01 16 34 H 0.08 0.90 6.58 -51.93 -0.34 0.56 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.83 6.95 -51.93 -0.36 0.47 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.41 4.23 8.20 -40.82 -0.33 3.90 16 40 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.18 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.10 0.03 8.13 -51.93 -0.42 -0.39 16 44 H 0.10 0.31 8.14 -51.92 -0.42 -0.12 16 45 H 0.09 1.42 6.71 -51.93 -0.35 1.07 16 46 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 402.46 15.07 6.06 6.06 Total: -1.00 -35.44 402.46 -7.47 -42.91 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.36 Total: 11.38 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -0.81 Total: 8.33 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.50 Total: -61.06 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.17 Total: -23.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.44 -7.47 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713029788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.805 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds