Wall clock time and date at job start Tue Mar 31 2020 20:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47267 * 2 1 4 4 C 1.46900 * 111.00186 * 76.02483 * 3 2 1 5 5 C 1.52995 * 109.47233 * 199.54775 * 4 3 2 6 6 C 1.53006 * 109.47308 * 174.89404 * 5 4 3 7 7 N 1.46498 * 109.47299 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00106 * 179.97438 * 7 6 5 9 9 O 1.21571 * 119.99596 * 0.02562 * 8 7 6 10 10 C 1.47710 * 120.00181 * 179.97438 * 8 7 6 11 11 C 1.41499 * 126.51867 * 179.71213 * 10 8 7 12 12 C 1.35364 * 105.50214 * 179.84611 * 11 10 8 13 13 N 1.35036 * 107.23048 * 0.41978 * 12 11 10 14 14 C 1.46497 * 124.88522 * 179.72296 * 13 12 11 15 15 N 1.28470 * 110.22688 * 359.72184 * 13 12 11 16 16 C 1.46904 * 111.00148 * 199.98255 * 3 2 1 17 17 C 1.50690 * 109.47151 * 66.04341 * 16 3 2 18 18 O 1.21292 * 120.00337 * 0.02562 * 17 16 3 19 19 N 1.34784 * 120.00160 * 179.97438 * 17 16 3 20 20 C 1.37094 * 119.99984 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00281 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99794 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00208 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46842 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47576 * 119.99553 * 24 22 20 27 27 H 1.48502 * 109.46904 * 240.00168 * 24 22 20 28 28 H 1.08998 * 109.46925 * 54.87166 * 1 2 3 29 29 H 1.09003 * 109.47032 * 174.87800 * 1 2 3 30 30 H 1.09000 * 109.46585 * 294.87304 * 1 2 3 31 31 H 1.09002 * 109.47428 * 239.99839 * 2 1 3 32 32 H 1.09009 * 109.47304 * 119.99968 * 2 1 3 33 33 H 1.09007 * 109.46984 * 79.55074 * 4 3 2 34 34 H 1.08997 * 109.47243 * 319.54948 * 4 3 2 35 35 H 1.09000 * 109.47377 * 54.89237 * 5 4 3 36 36 H 1.09006 * 109.47148 * 294.89041 * 5 4 3 37 37 H 1.09005 * 109.46756 * 59.99963 * 6 5 4 38 38 H 1.08997 * 109.46722 * 300.00084 * 6 5 4 39 39 H 0.97006 * 119.99978 * 0.02562 * 7 6 5 40 40 H 1.08001 * 127.25019 * 0.02562 * 11 10 8 41 41 H 1.07998 * 126.38724 * 180.13442 * 12 11 10 42 42 H 1.09003 * 109.47318 * 269.97053 * 14 13 12 43 43 H 1.08998 * 109.47309 * 29.97608 * 14 13 12 44 44 H 1.09008 * 109.46557 * 149.97166 * 14 13 12 45 45 H 1.09000 * 109.46837 * 186.04822 * 16 3 2 46 46 H 1.08999 * 109.46883 * 306.04279 * 16 3 2 47 47 H 0.97000 * 119.99512 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99811 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9279 3.5157 1.2036 6 6 1.6585 4.1498 2.5697 7 7 1.7009 5.6091 2.4477 8 6 1.4900 6.3823 3.5313 9 8 1.2651 5.8688 4.6100 10 6 1.5334 7.8537 3.4084 11 6 1.3277 8.7918 4.4475 12 6 1.4665 10.0080 3.8696 13 7 1.7295 9.8015 2.5613 14 6 1.9434 10.8609 1.5723 15 7 1.7651 8.5424 2.3088 16 6 3.4104 1.4517 -0.4687 17 6 3.4712 1.0499 -1.9197 18 8 2.4560 0.7390 -2.5061 19 7 4.6537 1.0369 -2.5664 20 6 4.7091 0.6709 -3.8864 21 1 3.8052 0.3932 -4.4083 22 6 5.9283 0.6570 -4.5529 23 7 7.0280 0.9953 -3.9181 24 14 6.0038 0.1589 -6.3518 25 1 4.6381 -0.1731 -6.8312 26 1 6.5509 1.2824 -7.1540 27 1 6.8823 -1.0291 -6.4999 28 1 -0.3633 0.5913 -0.8405 29 1 -0.3633 -1.0236 -0.0917 30 1 -0.3632 0.4323 0.9324 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.7006 1.6562 1.9689 34 1 0.9320 1.6918 1.7709 35 1 1.1677 3.8437 0.4945 36 1 2.9120 3.8218 0.8486 37 1 2.4188 3.8218 3.2787 38 1 0.6745 3.8437 2.9246 39 1 1.8801 6.0188 1.5869 40 1 1.1092 8.5818 5.4841 41 1 1.3784 10.9652 4.3621 42 1 0.9895 11.1359 1.1223 43 1 2.3789 11.7322 2.0615 44 1 2.6211 10.5028 0.7973 45 1 3.7827 2.4701 -0.3576 46 1 4.0258 0.7734 0.1223 47 1 5.4656 1.2859 -2.0976 48 1 7.8791 0.9860 -4.3836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713029788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:48 Heat of formation + Delta-G solvation = -15.587332 kcal Electronic energy + Delta-G solvation = -28100.598879 eV Core-core repulsion = 23998.450500 eV Total energy + Delta-G solvation = -4102.148379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.58250 -40.58477 -40.34396 -38.39701 -36.36609 -35.80419 -34.41550 -33.29813 -32.98777 -31.76408 -31.42725 -28.94015 -28.07906 -26.54839 -25.47319 -23.82045 -22.65722 -22.41735 -22.09325 -21.02451 -20.72921 -19.83827 -18.83416 -17.93997 -17.47754 -17.28533 -16.94982 -16.90257 -16.46359 -16.22243 -16.18339 -15.58335 -15.43010 -15.33177 -15.08559 -14.77598 -14.63840 -14.10835 -14.03679 -13.68300 -13.57440 -13.41202 -13.34614 -13.27036 -13.00249 -12.86480 -12.75569 -12.40580 -12.39286 -12.27795 -12.11325 -11.95197 -11.85786 -11.53646 -11.40126 -11.29870 -10.34766 -10.22665 -10.14773 -9.97434 -9.94434 -9.17097 -8.45169 -5.93307 0.51234 1.20938 1.36687 1.41579 1.55760 1.60988 2.08339 2.15745 2.29736 2.35189 2.81357 3.21895 3.36481 3.41146 3.90737 3.95915 4.01910 4.07406 4.18712 4.27864 4.31496 4.41807 4.44210 4.48392 4.53420 4.56967 4.60809 4.70285 4.71866 4.74001 4.76316 4.76956 4.80681 4.96966 5.14116 5.21319 5.27752 5.32714 5.42275 5.42562 5.42884 5.89714 5.93649 6.13901 6.28676 6.39956 6.63002 6.88932 7.13061 7.15305 7.59277 8.15367 8.72620 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.002063 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.691579 B =13567.431081 C =15522.810684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.060 3.940 5 C -0.117 4.117 6 C 0.128 3.872 7 N -0.709 5.709 8 C 0.600 3.400 9 O -0.572 6.572 10 C -0.051 4.051 11 C -0.206 4.206 12 C 0.001 3.999 13 N -0.281 5.281 14 C 0.074 3.926 15 N -0.281 5.281 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.611 6.611 19 N -0.577 5.577 20 C -0.328 4.328 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.413 0.587 40 H 0.164 0.836 41 H 0.229 0.771 42 H 0.100 0.900 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 19.822 16.476 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 N -0.257 5.257 4 C -0.068 4.068 5 C -0.155 4.155 6 C 0.004 3.996 7 N -0.360 5.360 8 C 0.386 3.614 9 O -0.450 6.450 10 C -0.209 4.209 11 C -0.234 4.234 12 C -0.142 4.142 13 N -0.070 5.070 14 C -0.064 4.064 15 N -0.119 5.119 16 C -0.075 4.075 17 C 0.230 3.770 18 O -0.497 6.497 19 N -0.215 5.215 20 C -0.458 4.458 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.249 0.751 40 H 0.182 0.818 41 H 0.245 0.755 42 H 0.118 0.882 43 H 0.149 0.851 44 H 0.114 0.886 45 H 0.126 0.874 46 H 0.082 0.918 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.193 19.468 15.207 26.359 hybrid contribution 1.101 -0.471 0.132 1.205 sum -8.092 18.997 15.339 25.723 Atomic orbital electron populations 1.21621 0.93859 1.01565 1.01783 1.22089 0.97234 0.88239 1.00064 1.61546 1.18527 1.19561 1.26040 1.22077 1.02618 0.93754 0.88341 1.21649 1.03132 0.94942 0.95763 1.21311 1.02398 0.78172 0.97735 1.45853 1.71141 1.07357 1.11684 1.17161 0.75944 0.84550 0.83749 1.90754 1.51334 1.74632 1.28312 1.21911 1.12269 0.94201 0.92545 1.22035 1.09131 0.91180 1.01022 1.23511 1.04721 1.01733 0.84233 1.45932 1.47331 1.04312 1.09387 1.22635 1.05260 0.87156 0.91346 1.73469 1.20118 0.92199 1.26120 1.21772 0.90973 1.03053 0.91752 1.20784 0.83294 0.82836 0.90104 1.90482 1.35233 1.54142 1.69827 1.41961 1.08290 1.60346 1.10906 1.19671 0.94834 1.43724 0.87557 0.90368 1.26025 0.94135 0.97051 1.04245 1.69684 0.99089 1.48657 1.38917 0.84887 0.78196 0.78200 0.77155 1.19831 1.19612 1.19697 0.93898 0.91772 0.91366 0.92892 0.93920 0.93172 0.89062 0.90845 0.91188 0.91219 0.91124 0.75073 0.81842 0.75500 0.88151 0.85107 0.88588 0.87410 0.91787 0.77142 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.96 71.98 0.72 -2.90 16 2 C 0.05 1.65 5.18 86.30 0.45 2.10 16 3 N -0.53 -16.95 4.10 -900.80 -3.69 -20.65 16 4 C 0.06 1.39 4.81 86.30 0.41 1.80 16 5 C -0.12 -2.52 5.36 30.59 0.16 -2.35 16 6 C 0.13 2.70 5.67 86.38 0.49 3.19 16 7 N -0.71 -16.20 5.55 -466.09 -2.59 -18.79 16 8 C 0.60 16.19 7.82 86.75 0.68 16.87 16 9 O -0.57 -18.69 16.93 -3.94 -0.07 -18.75 16 10 C -0.05 -1.20 7.13 42.46 0.30 -0.90 16 11 C -0.21 -3.80 10.81 22.41 0.24 -3.56 16 12 C 0.00 0.01 11.46 83.54 0.96 0.97 16 13 N -0.28 -3.70 3.70 -369.45 -1.37 -5.07 16 14 C 0.07 0.25 11.31 127.77 1.44 1.69 16 15 N -0.28 -5.83 11.67 -48.18 -0.56 -6.39 16 16 C 0.06 1.94 5.28 85.55 0.45 2.40 16 17 C 0.44 21.18 7.29 87.65 0.64 21.82 16 18 O -0.61 -33.76 14.12 -3.07 -0.04 -33.80 16 19 N -0.58 -29.88 5.29 -306.99 -1.62 -31.51 16 20 C -0.33 -18.77 9.68 84.04 0.81 -17.95 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 23 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 24 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.54 6.91 -2.39 -0.02 1.52 16 31 H 0.05 2.15 5.85 -2.39 -0.01 2.14 16 32 H 0.04 1.18 8.00 -2.38 -0.02 1.16 16 33 H 0.05 1.05 8.00 -2.38 -0.02 1.04 16 34 H 0.09 1.89 6.58 -2.39 -0.02 1.87 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.53 6.95 -2.38 -0.02 1.52 16 37 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.41 8.57 8.20 -92.70 -0.76 7.81 16 40 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.23 0.17 8.06 -2.91 -0.02 0.15 16 42 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.13 -0.45 8.13 -2.39 -0.02 -0.47 16 44 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.11 3.34 6.71 -2.39 -0.02 3.32 16 46 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 47 H 0.39 19.49 7.90 -92.71 -0.73 18.76 16 48 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -79.72 402.46 0.09 -79.62 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.50 Total: 37.06 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 8.23 Total: 22.81 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -9.55 Total: -132.29 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -0.11 Total: -52.55 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -79.72 0.09 -79.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713029788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.035 kcal (2) G-P(sol) polarization free energy of solvation -79.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds