Wall clock time and date at job start Tue Mar 31 2020 21:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37361 * 125.83293 * 2 1 4 4 N 1.29394 * 108.83364 * 180.02562 * 3 2 1 5 5 N 1.40170 * 108.13897 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.35070 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47245 * 270.02686 * 6 5 4 8 8 C 1.50699 * 109.47031 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99948 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99928 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46924 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.58570 * 59.86347 * 12 11 10 14 14 C 1.53191 * 109.58703 * 180.14829 * 12 11 10 15 15 C 1.53036 * 109.31536 * 174.56607 * 14 12 11 16 16 C 1.53037 * 109.53574 * 298.63386 * 15 14 12 17 17 C 1.53190 * 109.31525 * 61.36410 * 16 15 14 18 18 N 1.46922 * 108.89105 * 305.29627 * 17 16 15 19 19 C 1.36945 * 120.62967 * 233.68371 * 18 17 16 20 20 H 1.07992 * 120.00334 * 149.01303 * 19 18 17 21 21 C 1.38818 * 119.99718 * 329.00831 * 19 18 17 22 22 N 1.31616 * 119.99859 * 162.32520 * 21 19 18 23 23 Si 1.86806 * 119.99980 * 342.32540 * 21 19 18 24 24 H 1.48502 * 109.46908 * 90.02712 * 23 21 19 25 25 H 1.48498 * 109.47175 * 210.02719 * 23 21 19 26 26 H 1.48496 * 109.46972 * 330.03098 * 23 21 19 27 27 C 1.34814 * 125.83538 * 180.33561 * 2 1 3 28 28 O 1.21820 * 126.30236 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47405 * 359.97078 * 1 2 3 30 30 H 1.08995 * 109.47258 * 119.97720 * 1 2 3 31 31 H 1.09009 * 109.46851 * 239.97444 * 1 2 3 32 32 H 1.08011 * 125.58103 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46982 * 150.02627 * 6 5 4 34 34 H 1.08996 * 109.47156 * 30.02425 * 6 5 4 35 35 H 1.08995 * 109.47344 * 60.00120 * 7 6 5 36 36 H 1.08996 * 109.46831 * 299.99938 * 7 6 5 37 37 H 0.97000 * 119.99923 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47566 * 60.00048 * 11 10 8 39 39 H 1.08996 * 109.47262 * 299.99298 * 11 10 8 40 40 H 1.09001 * 109.50322 * 54.61100 * 14 12 11 41 41 H 1.09001 * 109.49822 * 294.51482 * 14 12 11 42 42 H 1.08997 * 109.46486 * 178.61448 * 15 14 12 43 43 H 1.09004 * 109.45093 * 58.64358 * 15 14 12 44 44 H 1.08997 * 109.49849 * 301.40880 * 16 15 14 45 45 H 1.09008 * 109.50057 * 181.31623 * 16 15 14 46 46 H 1.09001 * 109.58805 * 65.15152 * 17 16 15 47 47 H 1.08999 * 109.58832 * 185.43379 * 17 16 15 48 48 H 0.97002 * 119.99530 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 -0.0005 5 7 3.5345 -0.6661 -0.0003 6 6 4.7314 -1.5108 -0.0013 7 6 5.1472 -1.8046 -1.4442 8 6 6.3780 -2.6740 -1.4451 9 8 6.8742 -3.0238 -0.3952 10 7 6.9281 -3.0620 -2.6128 11 6 8.1250 -3.9067 -2.6137 12 6 8.5407 -4.2006 -4.0565 13 1 8.7548 -3.2649 -4.5729 14 6 9.7901 -5.0870 -4.0606 15 6 10.1212 -5.4885 -5.4997 16 6 8.9580 -6.2907 -6.0877 17 6 7.6991 -5.4180 -6.1066 18 7 7.4528 -4.9088 -4.7506 19 6 6.2378 -5.0928 -4.1462 20 1 6.1787 -5.1955 -3.0729 21 6 5.0822 -5.1473 -4.9134 22 7 3.9803 -5.6598 -4.4080 23 14 5.0910 -4.4932 -6.6632 24 1 5.4650 -5.5850 -7.5978 25 1 3.7386 -3.9869 -7.0093 26 1 6.0766 -3.3880 -6.7735 27 6 2.2543 -1.0929 -0.0064 28 8 1.8806 -2.2524 -0.0136 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5134 -0.8901 31 1 -0.3633 -0.5143 0.8898 32 1 1.9249 2.1374 0.0004 33 1 4.5154 -2.4476 0.5125 34 1 5.5417 -0.9933 0.5120 35 1 5.3631 -0.8679 -1.9580 36 1 4.3368 -2.3221 -1.9575 37 1 6.5315 -2.7819 -3.4525 38 1 7.9090 -4.8436 -2.1002 39 1 8.9353 -3.3893 -2.1000 40 1 9.6034 -5.9819 -3.4670 41 1 10.6286 -4.5359 -3.6347 42 1 11.0241 -6.0991 -5.5079 43 1 10.2834 -4.5922 -6.0985 44 1 8.7790 -7.1743 -5.4751 45 1 9.2041 -6.5963 -7.1047 46 1 7.8446 -4.5815 -6.7902 47 1 6.8467 -6.0133 -6.4339 48 1 3.1727 -5.6974 -4.9440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713253405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:37 Heat of formation + Delta-G solvation = 35.534473 kcal Electronic energy + Delta-G solvation = -30146.359165 eV Core-core repulsion = 26046.427594 eV Total energy + Delta-G solvation = -4099.931571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -42.39375 -39.31695 -37.99070 -37.16843 -35.64338 -34.24480 -33.04669 -32.69283 -31.01817 -30.70391 -29.68314 -27.59251 -26.26024 -25.02810 -23.87694 -22.66591 -22.30223 -21.12289 -20.69976 -19.84094 -19.24038 -17.70165 -16.98661 -16.65457 -16.20714 -16.07496 -15.63224 -15.47248 -15.27498 -15.02673 -14.54354 -14.43909 -13.85293 -13.72588 -13.69355 -13.26461 -13.07483 -12.99295 -12.95054 -12.61477 -12.45736 -12.19835 -12.09523 -11.96212 -11.86360 -11.63066 -11.30996 -10.99359 -10.82310 -10.65225 -10.44642 -10.20829 -10.18685 -10.11736 -9.95099 -9.61456 -9.48771 -9.26130 -8.69183 -8.53224 -8.23552 -6.94637 -5.96337 -3.38210 1.75080 1.89053 2.73487 3.05527 3.23223 3.27966 3.42000 3.44675 3.90898 4.34495 4.47716 4.59918 4.80077 4.90643 5.03355 5.07315 5.23250 5.29074 5.31297 5.32999 5.37732 5.42911 5.52428 5.65002 5.74520 5.75962 5.87961 5.92723 5.96822 6.11433 6.13310 6.19890 6.22868 6.26107 6.38521 6.43403 6.47188 6.51941 6.57002 6.69803 6.75783 6.98366 7.16960 7.60589 7.93884 8.10214 8.23651 8.34330 8.86076 8.90511 9.67687 10.06461 11.17889 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.003163 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.161542 B = 8849.477275 C =10057.084683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.565 5.565 3 C 0.246 3.754 4 N -0.281 5.281 5 N -0.449 5.449 6 C 0.180 3.820 7 C -0.160 4.160 8 C 0.522 3.478 9 O -0.566 6.566 10 N -0.692 5.692 11 C 0.135 3.865 12 C 0.163 3.837 13 H 0.036 0.964 14 C -0.128 4.128 15 C -0.108 4.108 16 C -0.136 4.136 17 C 0.125 3.875 18 N -0.604 5.604 19 C -0.264 4.264 20 H 0.093 0.907 21 C 0.029 3.971 22 N -0.900 5.900 23 Si 0.879 3.121 24 H -0.288 1.288 25 H -0.306 1.306 26 H -0.272 1.272 27 C 0.640 3.360 28 O -0.542 6.542 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.228 0.772 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.023 0.977 47 H 0.072 0.928 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 14.518 4.514 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.295 5.295 3 C -0.053 4.053 4 N -0.102 5.102 5 N -0.270 5.270 6 C 0.059 3.941 7 C -0.201 4.201 8 C 0.307 3.693 9 O -0.446 6.446 10 N -0.342 5.342 11 C 0.011 3.989 12 C 0.056 3.944 13 H 0.054 0.946 14 C -0.168 4.168 15 C -0.146 4.146 16 C -0.175 4.175 17 C 0.000 4.000 18 N -0.329 5.329 19 C -0.392 4.392 20 H 0.111 0.889 21 C -0.171 4.171 22 N -0.542 5.542 23 Si 0.709 3.291 24 H -0.216 1.216 25 H -0.234 1.234 26 H -0.197 1.197 27 C 0.339 3.661 28 O -0.414 6.414 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.245 0.755 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.090 0.910 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.648 13.624 5.243 14.612 hybrid contribution -1.217 0.201 -1.733 2.127 sum -0.569 13.824 3.510 14.274 Atomic orbital electron populations 1.21774 0.74389 1.03849 1.04025 1.45969 1.08819 1.06786 1.67900 1.25882 0.86013 0.94611 0.98763 1.76939 1.18138 0.92507 1.22636 1.49089 1.06384 1.02796 1.68757 1.21205 0.82803 0.93384 0.96664 1.21990 0.98314 1.01144 0.98638 1.20043 0.84513 0.80688 0.84042 1.90647 1.64124 1.58371 1.31501 1.45885 1.29230 1.50406 1.08644 1.21259 0.86210 0.94865 0.96544 1.20797 0.88692 0.93543 0.91347 0.94604 1.21931 0.97504 1.00509 0.96863 1.21366 0.97438 0.99425 0.96352 1.22009 0.96552 0.99478 0.99487 1.21363 0.96228 0.95143 0.87246 1.44470 1.10808 1.63508 1.14149 1.18978 0.81248 1.44993 0.94021 0.88911 1.25356 0.95253 0.99211 0.97277 1.69821 1.01711 1.45400 1.37309 0.87036 0.75703 0.79764 0.86559 1.21567 1.23390 1.19672 1.16852 0.82195 0.85131 0.81897 1.91158 1.77527 1.15053 1.57633 0.89061 0.90421 0.90573 0.75548 0.87787 0.88097 0.88789 0.87802 0.75238 0.91194 0.92379 0.91588 0.92528 0.93062 0.92783 0.91799 0.93087 0.95932 0.91034 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.08 59.85 0.66 1.36 16 2 N -0.56 -6.17 3.14 -130.10 -0.41 -6.58 16 3 C 0.25 2.09 12.61 -89.12 -1.12 0.96 16 4 N -0.28 -3.45 12.53 29.87 0.37 -3.07 16 5 N -0.45 -6.81 3.63 -65.12 -0.24 -7.05 16 6 C 0.18 2.84 5.68 -4.04 -0.02 2.82 16 7 C -0.16 -2.64 6.02 -27.88 -0.17 -2.81 16 8 C 0.52 9.94 7.83 -10.98 -0.09 9.85 16 9 O -0.57 -12.03 15.98 5.56 0.09 -11.94 16 10 N -0.69 -13.18 3.87 -60.30 -0.23 -13.42 16 11 C 0.14 2.51 4.43 -4.04 -0.02 2.49 16 12 C 0.16 2.96 3.00 -67.45 -0.20 2.76 16 13 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 14 C -0.13 -2.01 5.37 -26.61 -0.14 -2.16 16 15 C -0.11 -1.62 5.88 -26.69 -0.16 -1.77 16 16 C -0.14 -2.33 6.08 -26.61 -0.16 -2.50 16 17 C 0.13 2.61 4.19 -3.71 -0.02 2.59 16 18 N -0.60 -13.23 2.73 -164.57 -0.45 -13.67 16 19 C -0.26 -6.79 7.48 -15.05 -0.11 -6.91 16 20 H 0.09 2.64 6.08 -52.49 -0.32 2.32 16 21 C 0.03 0.79 5.26 -17.43 -0.09 0.70 16 22 N -0.90 -26.95 13.97 55.49 0.78 -26.18 16 23 Si 0.88 21.42 24.34 -169.99 -4.14 17.28 16 24 H -0.29 -6.93 6.56 56.52 0.37 -6.55 16 25 H -0.31 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.27 -6.38 6.72 56.52 0.38 -6.00 16 27 C 0.64 10.41 8.61 -86.73 -0.75 9.66 16 28 O -0.54 -11.17 17.77 5.08 0.09 -11.08 16 29 H 0.09 0.23 8.07 -51.93 -0.42 -0.19 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.23 0.55 8.06 -52.48 -0.42 0.13 16 33 H 0.10 1.81 8.07 -51.93 -0.42 1.39 16 34 H 0.10 1.46 8.10 -51.93 -0.42 1.04 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 37 H 0.41 7.99 7.43 -40.82 -0.30 7.69 16 38 H 0.07 1.47 7.42 -51.93 -0.39 1.09 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.02 0.47 7.04 -51.93 -0.37 0.10 16 47 H 0.07 1.65 4.69 -51.93 -0.24 1.41 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -36.04 382.84 -8.31 -44.35 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.56 Total: 8.55 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: -2.39 Total: 17.05 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -0.18 Total: -69.97 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.18 Total: -23.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.04 -8.31 -44.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713253405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.888 kcal (2) G-P(sol) polarization free energy of solvation -36.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds