Wall clock time and date at job start Tue Mar 31 2020 21:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37361 * 125.83293 * 2 1 4 4 N 1.29394 * 108.83364 * 180.02562 * 3 2 1 5 5 N 1.40170 * 108.13897 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.35070 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47245 * 270.02686 * 6 5 4 8 8 C 1.50699 * 109.47031 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99948 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99928 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46924 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.58570 * 59.86347 * 12 11 10 14 14 C 1.53191 * 109.58703 * 180.14829 * 12 11 10 15 15 C 1.53036 * 109.31536 * 174.56607 * 14 12 11 16 16 C 1.53037 * 109.53574 * 298.63386 * 15 14 12 17 17 C 1.53190 * 109.31525 * 61.36410 * 16 15 14 18 18 N 1.46922 * 108.89105 * 305.29627 * 17 16 15 19 19 C 1.36945 * 120.62967 * 233.68371 * 18 17 16 20 20 H 1.07992 * 120.00334 * 149.01303 * 19 18 17 21 21 C 1.38818 * 119.99718 * 329.00831 * 19 18 17 22 22 N 1.31616 * 119.99859 * 162.32520 * 21 19 18 23 23 Si 1.86806 * 119.99980 * 342.32540 * 21 19 18 24 24 H 1.48502 * 109.46908 * 90.02712 * 23 21 19 25 25 H 1.48498 * 109.47175 * 210.02719 * 23 21 19 26 26 H 1.48496 * 109.46972 * 330.03098 * 23 21 19 27 27 C 1.34814 * 125.83538 * 180.33561 * 2 1 3 28 28 O 1.21820 * 126.30236 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47405 * 359.97078 * 1 2 3 30 30 H 1.08995 * 109.47258 * 119.97720 * 1 2 3 31 31 H 1.09009 * 109.46851 * 239.97444 * 1 2 3 32 32 H 1.08011 * 125.58103 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.46982 * 150.02627 * 6 5 4 34 34 H 1.08996 * 109.47156 * 30.02425 * 6 5 4 35 35 H 1.08995 * 109.47344 * 60.00120 * 7 6 5 36 36 H 1.08996 * 109.46831 * 299.99938 * 7 6 5 37 37 H 0.97000 * 119.99923 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47566 * 60.00048 * 11 10 8 39 39 H 1.08996 * 109.47262 * 299.99298 * 11 10 8 40 40 H 1.09001 * 109.50322 * 54.61100 * 14 12 11 41 41 H 1.09001 * 109.49822 * 294.51482 * 14 12 11 42 42 H 1.08997 * 109.46486 * 178.61448 * 15 14 12 43 43 H 1.09004 * 109.45093 * 58.64358 * 15 14 12 44 44 H 1.08997 * 109.49849 * 301.40880 * 16 15 14 45 45 H 1.09008 * 109.50057 * 181.31623 * 16 15 14 46 46 H 1.09001 * 109.58805 * 65.15152 * 17 16 15 47 47 H 1.08999 * 109.58832 * 185.43379 * 17 16 15 48 48 H 0.97002 * 119.99530 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 -0.0005 5 7 3.5345 -0.6661 -0.0003 6 6 4.7314 -1.5108 -0.0013 7 6 5.1472 -1.8046 -1.4442 8 6 6.3780 -2.6740 -1.4451 9 8 6.8742 -3.0238 -0.3952 10 7 6.9281 -3.0620 -2.6128 11 6 8.1250 -3.9067 -2.6137 12 6 8.5407 -4.2006 -4.0565 13 1 8.7548 -3.2649 -4.5729 14 6 9.7901 -5.0870 -4.0606 15 6 10.1212 -5.4885 -5.4997 16 6 8.9580 -6.2907 -6.0877 17 6 7.6991 -5.4180 -6.1066 18 7 7.4528 -4.9088 -4.7506 19 6 6.2378 -5.0928 -4.1462 20 1 6.1787 -5.1955 -3.0729 21 6 5.0822 -5.1473 -4.9134 22 7 3.9803 -5.6598 -4.4080 23 14 5.0910 -4.4932 -6.6632 24 1 5.4650 -5.5850 -7.5978 25 1 3.7386 -3.9869 -7.0093 26 1 6.0766 -3.3880 -6.7735 27 6 2.2543 -1.0929 -0.0064 28 8 1.8806 -2.2524 -0.0136 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5134 -0.8901 31 1 -0.3633 -0.5143 0.8898 32 1 1.9249 2.1374 0.0004 33 1 4.5154 -2.4476 0.5125 34 1 5.5417 -0.9933 0.5120 35 1 5.3631 -0.8679 -1.9580 36 1 4.3368 -2.3221 -1.9575 37 1 6.5315 -2.7819 -3.4525 38 1 7.9090 -4.8436 -2.1002 39 1 8.9353 -3.3893 -2.1000 40 1 9.6034 -5.9819 -3.4670 41 1 10.6286 -4.5359 -3.6347 42 1 11.0241 -6.0991 -5.5079 43 1 10.2834 -4.5922 -6.0985 44 1 8.7790 -7.1743 -5.4751 45 1 9.2041 -6.5963 -7.1047 46 1 7.8446 -4.5815 -6.7902 47 1 6.8467 -6.0133 -6.4339 48 1 3.1727 -5.6974 -4.9440 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713253405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:35 Heat of formation + Delta-G solvation = 9.870232 kcal Electronic energy + Delta-G solvation = -30147.472050 eV Core-core repulsion = 26046.427594 eV Total energy + Delta-G solvation = -4101.044456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.40366 -40.89246 -39.53793 -38.44311 -36.71356 -35.76988 -34.89146 -33.83167 -32.63926 -32.36204 -30.88292 -28.47670 -27.73006 -26.58317 -25.21114 -24.29890 -23.29398 -22.33972 -22.07411 -21.39016 -20.77928 -18.90687 -18.49862 -17.92218 -17.64836 -17.38951 -17.06211 -16.80076 -16.73347 -16.57326 -16.04323 -15.50241 -15.28600 -15.18493 -14.86488 -14.76197 -14.49754 -14.38071 -14.26104 -13.88471 -13.71450 -13.52972 -13.48130 -13.26764 -13.20001 -12.92548 -12.90920 -12.54125 -12.39211 -12.29909 -11.97004 -11.70553 -11.56258 -11.39694 -11.28303 -11.21914 -11.13760 -10.79635 -10.63879 -9.87586 -9.67476 -8.80587 -8.09644 -5.46606 0.71267 1.10474 1.31522 1.40126 1.49835 1.54744 1.65681 2.18725 2.44115 2.48379 3.07720 3.30813 3.45154 3.69287 3.89698 3.92578 3.99551 4.07750 4.12008 4.18574 4.28518 4.32909 4.34795 4.44133 4.47444 4.52244 4.62298 4.65031 4.70032 4.75187 4.78915 4.87477 4.94906 4.96120 5.06446 5.09562 5.16332 5.25111 5.31121 5.32069 5.58385 5.64699 5.71920 5.93603 6.24244 6.63216 6.64378 6.93845 6.94948 7.28555 7.66392 8.07535 9.08971 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.003163 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.161542 B = 8849.477275 C =10057.084683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.558 5.558 3 C 0.280 3.720 4 N -0.312 5.312 5 N -0.458 5.458 6 C 0.188 3.812 7 C -0.144 4.144 8 C 0.519 3.481 9 O -0.590 6.590 10 N -0.693 5.693 11 C 0.137 3.863 12 C 0.161 3.839 13 H 0.058 0.942 14 C -0.124 4.124 15 C -0.103 4.103 16 C -0.132 4.132 17 C 0.118 3.882 18 N -0.617 5.617 19 C -0.228 4.228 20 H 0.055 0.945 21 C -0.031 4.031 22 N -0.959 5.959 23 Si 0.942 3.058 24 H -0.283 1.283 25 H -0.322 1.322 26 H -0.250 1.250 27 C 0.619 3.381 28 O -0.604 6.604 29 H 0.149 0.851 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.296 0.704 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.409 0.591 38 H 0.035 0.965 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.036 0.964 47 H 0.042 0.958 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 18.038 3.166 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.134 5.134 5 N -0.277 5.277 6 C 0.066 3.934 7 C -0.185 4.185 8 C 0.305 3.695 9 O -0.472 6.472 10 N -0.342 5.342 11 C 0.013 3.987 12 C 0.056 3.944 13 H 0.075 0.925 14 C -0.164 4.164 15 C -0.140 4.140 16 C -0.171 4.171 17 C -0.006 4.006 18 N -0.343 5.343 19 C -0.358 4.358 20 H 0.073 0.927 21 C -0.225 4.225 22 N -0.605 5.605 23 Si 0.771 3.229 24 H -0.210 1.210 25 H -0.251 1.251 26 H -0.174 1.174 27 C 0.317 3.683 28 O -0.481 6.481 29 H 0.167 0.833 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.311 0.689 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.245 0.755 38 H 0.053 0.947 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.623 17.208 3.874 17.833 hybrid contribution -1.806 -0.844 -1.214 2.335 sum 0.816 16.364 2.660 16.599 Atomic orbital electron populations 1.22168 0.71844 1.07372 1.03316 1.46177 1.10197 1.05901 1.66312 1.27271 0.84330 0.96032 0.94092 1.76982 1.20444 0.90000 1.25927 1.49017 1.05649 1.04396 1.68654 1.20953 0.83756 0.92920 0.95787 1.21852 0.95957 1.01364 0.99312 1.20431 0.84859 0.80574 0.83649 1.90624 1.65007 1.59336 1.32259 1.45930 1.29508 1.50215 1.08507 1.21296 0.86647 0.93556 0.97153 1.21044 0.88456 0.94556 0.90349 0.92487 1.21908 0.97009 0.99603 0.97849 1.21368 0.97222 1.00121 0.95313 1.21941 0.95701 0.98391 1.01022 1.21435 0.97068 0.95799 0.86342 1.44604 1.10324 1.64505 1.14840 1.18720 0.82902 1.41711 0.92430 0.92716 1.25915 0.94947 1.00452 1.01235 1.69989 1.02600 1.48772 1.39150 0.86007 0.75101 0.79642 0.82106 1.20993 1.25144 1.17357 1.17284 0.83191 0.85587 0.82206 1.91091 1.78636 1.17887 1.60443 0.83314 0.91650 0.90951 0.68895 0.90682 0.86592 0.86050 0.90710 0.75461 0.94691 0.89874 0.93321 0.89177 0.90306 0.91207 0.93545 0.90557 0.94596 0.93930 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 11.08 127.77 1.42 2.50 16 2 N -0.56 -11.38 3.14 -683.66 -2.15 -13.53 16 3 C 0.28 3.74 12.61 179.82 2.27 6.01 16 4 N -0.31 -7.10 12.53 -59.41 -0.74 -7.84 16 5 N -0.46 -14.22 3.63 -478.01 -1.73 -15.95 16 6 C 0.19 6.26 5.68 86.38 0.49 6.75 16 7 C -0.14 -5.00 6.02 29.85 0.18 -4.82 16 8 C 0.52 20.55 7.83 87.66 0.69 21.24 16 9 O -0.59 -26.11 15.98 -3.04 -0.05 -26.16 16 10 N -0.69 -26.94 3.87 -463.07 -1.79 -28.73 16 11 C 0.14 5.08 4.43 86.38 0.38 5.46 16 12 C 0.16 5.55 3.00 44.92 0.13 5.69 16 13 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 14 C -0.12 -3.51 5.37 30.67 0.16 -3.34 16 15 C -0.10 -2.62 5.88 30.62 0.18 -2.44 16 16 C -0.13 -4.15 6.08 30.67 0.19 -3.96 16 17 C 0.12 4.70 4.19 86.36 0.36 5.06 16 18 N -0.62 -26.64 2.73 -674.58 -1.84 -28.48 16 19 C -0.23 -12.12 7.48 84.03 0.63 -11.49 16 20 H 0.06 3.32 6.08 -2.91 -0.02 3.30 16 21 C -0.03 -1.75 5.26 84.86 0.45 -1.30 16 22 N -0.96 -60.84 13.97 21.65 0.30 -60.54 16 23 Si 0.94 45.21 24.34 68.60 1.67 46.88 16 24 H -0.28 -13.19 6.56 99.48 0.65 -12.54 16 25 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 26 H -0.25 -10.93 6.72 99.48 0.67 -10.26 16 27 C 0.62 20.95 8.61 178.99 1.54 22.49 16 28 O -0.60 -27.00 17.77 -4.73 -0.08 -27.08 16 29 H 0.15 0.00 8.07 -2.39 -0.02 -0.02 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.30 -0.56 8.06 -2.90 -0.02 -0.59 16 33 H 0.07 2.89 8.07 -2.38 -0.02 2.88 16 34 H 0.12 3.44 8.10 -2.39 -0.02 3.42 16 35 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.41 16.11 7.43 -92.71 -0.69 15.42 16 38 H 0.03 1.53 7.42 -2.39 -0.02 1.52 16 39 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.04 1.35 7.04 -2.39 -0.02 1.34 16 47 H 0.04 1.94 4.69 -2.39 -0.01 1.93 16 48 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -87.42 382.84 2.84 -84.58 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.19 Total: 29.02 kcal Atomic # 6 Polarization: 38.77 SS G_CDS: 9.07 Total: 47.83 kcal Atomic # 7 Polarization: -147.13 SS G_CDS: -7.95 Total: -155.08 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.13 Total: -53.24 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.67 Total: 46.88 kcal Total: -87.42 2.84 -84.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713253405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.451 kcal (2) G-P(sol) polarization free energy of solvation -87.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds