Wall clock time and date at job start Tue Mar 31 2020 21:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37355 * 125.82982 * 2 1 4 4 N 1.29404 * 108.83051 * 179.77272 * 3 2 1 5 5 N 1.40171 * 108.13578 * 0.38601 * 4 3 2 6 6 C 1.46497 * 126.34403 * 179.87607 * 5 4 3 7 7 C 1.53005 * 109.47386 * 269.68753 * 6 5 4 8 8 C 1.50698 * 109.47119 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00281 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99681 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00114 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47092 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.58794 * 299.05076 * 12 11 10 14 14 C 1.53200 * 109.58546 * 178.62162 * 12 11 10 15 15 C 1.53041 * 109.31242 * 185.57683 * 14 12 11 16 16 C 1.53038 * 109.53661 * 61.36715 * 15 14 12 17 17 C 1.53629 * 109.24174 * 298.51079 * 16 15 14 18 18 N 1.46922 * 109.58801 * 59.33563 * 12 11 10 19 19 C 1.36941 * 120.63231 * 353.36854 * 18 12 11 20 20 H 1.07999 * 119.99568 * 30.92744 * 19 18 12 21 21 C 1.38810 * 120.00262 * 210.92780 * 19 18 12 22 22 N 1.31614 * 119.99932 * 22.40885 * 21 19 18 23 23 Si 1.86798 * 119.99927 * 202.40999 * 21 19 18 24 24 H 1.48495 * 109.47245 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.46970 * 299.99685 * 23 21 19 26 26 H 1.48496 * 109.47336 * 59.99580 * 23 21 19 27 27 C 1.34808 * 125.83708 * 180.02562 * 2 1 3 28 28 O 1.21820 * 126.30134 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47343 * 269.97039 * 1 2 3 30 30 H 1.09003 * 109.47500 * 29.97409 * 1 2 3 31 31 H 1.09000 * 109.47166 * 149.97753 * 1 2 3 32 32 H 1.08003 * 125.58919 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46685 * 149.69137 * 6 5 4 34 34 H 1.09001 * 109.47811 * 29.69137 * 6 5 4 35 35 H 1.08998 * 109.46937 * 59.99982 * 7 6 5 36 36 H 1.09000 * 109.46560 * 300.00552 * 7 6 5 37 37 H 0.97004 * 120.00445 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.46779 * 60.00307 * 11 10 8 39 39 H 1.08996 * 109.46881 * 300.00576 * 11 10 8 40 40 H 1.08998 * 109.49410 * 305.53602 * 14 12 11 41 41 H 1.09004 * 109.49338 * 65.59544 * 14 12 11 42 42 H 1.09001 * 109.45479 * 181.38747 * 15 14 12 43 43 H 1.08994 * 109.46032 * 301.36007 * 15 14 12 44 44 H 1.09003 * 109.49872 * 58.58601 * 16 15 14 45 45 H 1.08997 * 109.49534 * 178.67948 * 16 15 14 46 46 H 1.08993 * 109.73685 * 295.11451 * 17 16 15 47 47 H 1.08998 * 109.66407 * 174.55092 * 17 16 15 48 48 H 0.97003 * 120.00040 * 5.27889 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2690 1.1136 0.0000 4 7 3.5065 0.7353 0.0049 5 7 3.5344 -0.6661 -0.0008 6 6 4.7314 -1.5107 -0.0006 7 6 5.1480 -1.8053 -1.4431 8 6 6.3789 -2.6747 -1.4428 9 8 6.8746 -3.0238 -0.3924 10 7 6.9290 -3.0641 -2.6099 11 6 8.1260 -3.9088 -2.6098 12 6 8.5417 -4.2045 -4.0522 13 1 7.7392 -4.7378 -4.5618 14 6 9.8131 -5.0592 -4.0553 15 6 10.3015 -5.2346 -5.4950 16 6 10.6381 -3.8661 -6.0916 17 6 9.3708 -2.9979 -6.1137 18 7 8.8180 -2.9434 -4.7536 19 6 8.5598 -1.7400 -4.1531 20 1 8.6377 -1.6442 -3.0802 21 6 8.1981 -0.6434 -4.9235 22 7 7.6789 -0.8220 -6.1196 23 14 8.4481 1.0857 -4.2624 24 1 7.9854 2.0728 -5.2707 25 1 7.6684 1.2543 -3.0098 26 1 9.8897 1.3046 -3.9813 27 6 2.2543 -1.0929 -0.0005 28 8 1.8806 -2.2524 -0.0006 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9249 2.1373 0.0004 33 1 4.5151 -2.4472 0.5136 34 1 5.5415 -0.9929 0.5130 35 1 5.3641 -0.8689 -1.9572 36 1 4.3379 -2.3232 -1.9565 37 1 6.5324 -2.7852 -3.4501 38 1 7.9099 -4.8451 -2.0951 39 1 8.9362 -3.3907 -2.0966 40 1 10.5856 -4.5643 -3.4667 41 1 9.5959 -6.0359 -3.6227 42 1 11.1922 -5.8629 -5.5022 43 1 9.5191 -5.7070 -6.0889 44 1 11.4029 -3.3824 -5.4840 45 1 11.0080 -3.9938 -7.1089 46 1 8.6363 -3.4359 -6.7894 47 1 9.6219 -1.9909 -6.4468 48 1 7.4780 -1.7180 -6.4324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713253406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:43 Heat of formation + Delta-G solvation = 27.241609 kcal Electronic energy + Delta-G solvation = -30110.163910 eV Core-core repulsion = 26009.872733 eV Total energy + Delta-G solvation = -4100.291177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.47837 -39.34841 -37.91601 -37.28987 -35.71731 -34.21856 -33.36571 -32.76244 -30.96462 -29.79513 -29.68339 -27.65886 -26.14040 -25.04868 -23.97502 -22.38048 -22.07464 -21.20917 -20.81393 -19.75981 -19.11966 -17.80312 -17.34747 -16.86045 -16.34091 -16.06702 -15.67672 -15.50600 -15.31850 -14.69114 -14.57329 -14.19888 -13.94562 -13.69664 -13.55922 -13.30943 -13.12824 -13.02574 -12.96973 -12.68369 -12.35818 -12.25256 -12.14054 -11.94894 -11.62609 -11.42711 -11.10411 -11.06841 -10.73825 -10.43002 -10.29754 -10.26452 -10.20710 -10.09971 -10.01197 -9.75983 -9.41582 -9.14786 -8.62433 -8.52764 -8.22120 -6.92054 -6.09121 -3.33418 1.67621 1.86326 2.60259 2.99571 3.17644 3.45521 3.49357 3.65651 3.87705 4.30826 4.50834 4.58046 4.84194 4.91800 4.99981 5.06168 5.20165 5.24045 5.30771 5.35600 5.41244 5.50915 5.58890 5.62973 5.64336 5.84363 5.91267 5.95226 5.97459 6.05012 6.19030 6.21460 6.25078 6.29927 6.44955 6.48440 6.52037 6.58525 6.68376 6.84277 7.07095 7.12846 7.19342 7.53965 7.97484 8.01148 8.21612 8.52137 8.82604 9.02435 9.76603 10.22565 11.15370 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.003125 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.980922 B = 8958.945250 C =10107.126671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.564 5.564 3 C 0.247 3.753 4 N -0.274 5.274 5 N -0.448 5.448 6 C 0.179 3.821 7 C -0.159 4.159 8 C 0.517 3.483 9 O -0.568 6.568 10 N -0.688 5.688 11 C 0.137 3.863 12 C 0.161 3.839 13 H 0.029 0.971 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.138 4.138 17 C 0.152 3.848 18 N -0.596 5.596 19 C -0.347 4.347 20 H 0.063 0.937 21 C -0.019 4.019 22 N -0.915 5.915 23 Si 1.056 2.944 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.294 1.294 27 C 0.642 3.358 28 O -0.555 6.555 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.414 0.586 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.017 0.983 47 H 0.077 0.923 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 1.461 7.869 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.294 5.294 3 C -0.052 4.052 4 N -0.094 5.094 5 N -0.268 5.268 6 C 0.058 3.942 7 C -0.201 4.201 8 C 0.302 3.698 9 O -0.449 6.449 10 N -0.338 5.338 11 C 0.013 3.987 12 C 0.054 3.946 13 H 0.047 0.953 14 C -0.167 4.167 15 C -0.145 4.145 16 C -0.178 4.178 17 C 0.027 3.973 18 N -0.321 5.321 19 C -0.476 4.476 20 H 0.080 0.920 21 C -0.222 4.222 22 N -0.555 5.555 23 Si 0.886 3.114 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.221 1.221 27 C 0.341 3.659 28 O -0.429 6.429 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.246 0.754 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.252 0.748 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.035 0.965 47 H 0.095 0.905 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.336 2.261 8.231 12.650 hybrid contribution -0.729 -1.523 -0.187 1.699 sum -10.065 0.738 8.044 12.906 Atomic orbital electron populations 1.21792 0.74394 1.04699 1.03347 1.45945 1.08832 1.06776 1.67830 1.25937 0.85878 0.94700 0.98706 1.77068 1.18075 0.92201 1.22100 1.49101 1.06321 1.03046 1.68357 1.21217 0.82984 0.93271 0.96693 1.21988 0.97479 1.02049 0.98540 1.20080 0.84926 0.80649 0.84150 1.90645 1.64589 1.58180 1.31482 1.45971 1.28512 1.50639 1.08714 1.21235 0.87516 0.93044 0.96873 1.20726 0.93963 0.88749 0.91127 0.95304 1.21930 0.99066 0.98850 0.96836 1.21359 0.99597 0.97284 0.96278 1.22145 1.00373 0.96264 0.98981 1.21036 0.90978 0.98862 0.86464 1.44168 1.72949 1.00696 1.14296 1.20010 1.45890 0.87950 0.93738 0.91961 1.25771 0.96484 1.02990 0.96915 1.70797 1.38801 1.25519 1.20431 0.83639 0.76367 0.76251 0.75170 1.21167 1.21717 1.22084 1.16808 0.82201 0.85107 0.81773 1.91088 1.77765 1.15188 1.58835 0.91022 0.89365 0.89470 0.75372 0.87984 0.87814 0.87781 0.88904 0.74815 0.92712 0.91575 0.91969 0.92903 0.93423 0.92895 0.92446 0.93369 0.96535 0.90467 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.58 11.05 59.85 0.66 1.24 16 2 N -0.56 -5.76 3.14 -130.11 -0.41 -6.17 16 3 C 0.25 2.14 12.66 -89.12 -1.13 1.01 16 4 N -0.27 -3.55 12.53 29.87 0.37 -3.18 16 5 N -0.45 -6.65 3.63 -65.12 -0.24 -6.88 16 6 C 0.18 2.76 5.68 -4.04 -0.02 2.74 16 7 C -0.16 -2.61 6.02 -27.88 -0.17 -2.77 16 8 C 0.52 9.80 7.83 -10.99 -0.09 9.72 16 9 O -0.57 -11.98 15.98 5.56 0.09 -11.89 16 10 N -0.69 -13.37 3.80 -60.29 -0.23 -13.60 16 11 C 0.14 2.64 4.43 -4.04 -0.02 2.62 16 12 C 0.16 3.11 3.02 -67.60 -0.20 2.91 16 13 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 14 C -0.13 -2.14 5.37 -26.61 -0.14 -2.28 16 15 C -0.11 -1.74 5.88 -26.69 -0.16 -1.89 16 16 C -0.14 -2.52 6.10 -26.38 -0.16 -2.68 16 17 C 0.15 3.33 4.70 -3.49 -0.02 3.32 16 18 N -0.60 -13.42 2.80 -164.51 -0.46 -13.88 16 19 C -0.35 -8.62 6.83 -15.06 -0.10 -8.72 16 20 H 0.06 1.61 5.90 -52.49 -0.31 1.30 16 21 C -0.02 -0.49 4.74 -17.43 -0.08 -0.57 16 22 N -0.92 -25.30 12.50 55.49 0.69 -24.61 16 23 Si 1.06 24.35 29.97 -169.99 -5.10 19.25 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.64 9.58 8.60 -86.75 -0.75 8.84 16 28 O -0.56 -10.03 17.71 5.08 0.09 -9.94 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.60 8.08 -51.93 -0.42 0.19 16 32 H 0.23 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.10 1.60 8.07 -51.93 -0.42 1.18 16 34 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16 35 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.41 8.45 7.31 -40.82 -0.30 8.15 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.40 7.48 -51.93 -0.39 1.01 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.02 0.37 7.81 -51.93 -0.41 -0.03 16 47 H 0.08 1.92 6.44 -51.93 -0.33 1.58 16 48 H 0.27 7.46 6.58 -40.82 -0.27 7.20 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -33.56 387.80 -9.27 -42.82 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.56 Total: 8.77 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: -2.37 Total: 13.47 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.27 Total: -68.32 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.18 Total: -21.84 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.10 Total: 19.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.56 -9.27 -42.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713253406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.067 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds