Wall clock time and date at job start Tue Mar 31 2020 21:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37355 * 125.82982 * 2 1 4 4 N 1.29404 * 108.83051 * 179.77272 * 3 2 1 5 5 N 1.40171 * 108.13578 * 0.38601 * 4 3 2 6 6 C 1.46497 * 126.34403 * 179.87607 * 5 4 3 7 7 C 1.53005 * 109.47386 * 269.68753 * 6 5 4 8 8 C 1.50698 * 109.47119 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00281 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99681 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00114 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47092 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.58794 * 299.05076 * 12 11 10 14 14 C 1.53200 * 109.58546 * 178.62162 * 12 11 10 15 15 C 1.53041 * 109.31242 * 185.57683 * 14 12 11 16 16 C 1.53038 * 109.53661 * 61.36715 * 15 14 12 17 17 C 1.53629 * 109.24174 * 298.51079 * 16 15 14 18 18 N 1.46922 * 109.58801 * 59.33563 * 12 11 10 19 19 C 1.36941 * 120.63231 * 353.36854 * 18 12 11 20 20 H 1.07999 * 119.99568 * 30.92744 * 19 18 12 21 21 C 1.38810 * 120.00262 * 210.92780 * 19 18 12 22 22 N 1.31614 * 119.99932 * 22.40885 * 21 19 18 23 23 Si 1.86798 * 119.99927 * 202.40999 * 21 19 18 24 24 H 1.48495 * 109.47245 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.46970 * 299.99685 * 23 21 19 26 26 H 1.48496 * 109.47336 * 59.99580 * 23 21 19 27 27 C 1.34808 * 125.83708 * 180.02562 * 2 1 3 28 28 O 1.21820 * 126.30134 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47343 * 269.97039 * 1 2 3 30 30 H 1.09003 * 109.47500 * 29.97409 * 1 2 3 31 31 H 1.09000 * 109.47166 * 149.97753 * 1 2 3 32 32 H 1.08003 * 125.58919 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46685 * 149.69137 * 6 5 4 34 34 H 1.09001 * 109.47811 * 29.69137 * 6 5 4 35 35 H 1.08998 * 109.46937 * 59.99982 * 7 6 5 36 36 H 1.09000 * 109.46560 * 300.00552 * 7 6 5 37 37 H 0.97004 * 120.00445 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.46779 * 60.00307 * 11 10 8 39 39 H 1.08996 * 109.46881 * 300.00576 * 11 10 8 40 40 H 1.08998 * 109.49410 * 305.53602 * 14 12 11 41 41 H 1.09004 * 109.49338 * 65.59544 * 14 12 11 42 42 H 1.09001 * 109.45479 * 181.38747 * 15 14 12 43 43 H 1.08994 * 109.46032 * 301.36007 * 15 14 12 44 44 H 1.09003 * 109.49872 * 58.58601 * 16 15 14 45 45 H 1.08997 * 109.49534 * 178.67948 * 16 15 14 46 46 H 1.08993 * 109.73685 * 295.11451 * 17 16 15 47 47 H 1.08998 * 109.66407 * 174.55092 * 17 16 15 48 48 H 0.97003 * 120.00040 * 5.27889 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2690 1.1136 0.0000 4 7 3.5065 0.7353 0.0049 5 7 3.5344 -0.6661 -0.0008 6 6 4.7314 -1.5107 -0.0006 7 6 5.1480 -1.8053 -1.4431 8 6 6.3789 -2.6747 -1.4428 9 8 6.8746 -3.0238 -0.3924 10 7 6.9290 -3.0641 -2.6099 11 6 8.1260 -3.9088 -2.6098 12 6 8.5417 -4.2045 -4.0522 13 1 7.7392 -4.7378 -4.5618 14 6 9.8131 -5.0592 -4.0553 15 6 10.3015 -5.2346 -5.4950 16 6 10.6381 -3.8661 -6.0916 17 6 9.3708 -2.9979 -6.1137 18 7 8.8180 -2.9434 -4.7536 19 6 8.5598 -1.7400 -4.1531 20 1 8.6377 -1.6442 -3.0802 21 6 8.1981 -0.6434 -4.9235 22 7 7.6789 -0.8220 -6.1196 23 14 8.4481 1.0857 -4.2624 24 1 7.9854 2.0728 -5.2707 25 1 7.6684 1.2543 -3.0098 26 1 9.8897 1.3046 -3.9813 27 6 2.2543 -1.0929 -0.0005 28 8 1.8806 -2.2524 -0.0006 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9249 2.1373 0.0004 33 1 4.5151 -2.4472 0.5136 34 1 5.5415 -0.9929 0.5130 35 1 5.3641 -0.8689 -1.9572 36 1 4.3379 -2.3232 -1.9565 37 1 6.5324 -2.7852 -3.4501 38 1 7.9099 -4.8451 -2.0951 39 1 8.9362 -3.3907 -2.0966 40 1 10.5856 -4.5643 -3.4667 41 1 9.5959 -6.0359 -3.6227 42 1 11.1922 -5.8629 -5.5022 43 1 9.5191 -5.7070 -6.0889 44 1 11.4029 -3.3824 -5.4840 45 1 11.0080 -3.9938 -7.1089 46 1 8.6363 -3.4359 -6.7894 47 1 9.6219 -1.9909 -6.4468 48 1 7.4780 -1.7180 -6.4324 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713253406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:42 Heat of formation + Delta-G solvation = 6.486409 kcal Electronic energy + Delta-G solvation = -30111.063923 eV Core-core repulsion = 26009.872733 eV Total energy + Delta-G solvation = -4101.191190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.42097 -40.92827 -39.51747 -38.42950 -36.73050 -35.77284 -35.17050 -33.85139 -32.47188 -31.51741 -30.89567 -28.45672 -27.63515 -26.63956 -25.27760 -23.75083 -23.32445 -22.49444 -22.11540 -21.30666 -20.71908 -19.21933 -18.71372 -17.92545 -17.58968 -17.37502 -16.99779 -16.82922 -16.66413 -16.12305 -15.95566 -15.50529 -15.47874 -15.07040 -14.95138 -14.80013 -14.45867 -14.37862 -13.94103 -13.88089 -13.76167 -13.50346 -13.26439 -13.23546 -13.09514 -12.88304 -12.74855 -12.55356 -12.40373 -11.99215 -11.96626 -11.73145 -11.64860 -11.39726 -11.30890 -11.18508 -11.03248 -10.78055 -10.44351 -9.89387 -9.68470 -8.81941 -8.09618 -5.32860 0.71594 1.08918 1.53177 1.57861 1.60452 1.63881 1.80148 2.15642 2.44100 2.64215 3.28334 3.43660 3.47711 3.66485 3.87860 3.91655 3.95095 4.09061 4.10559 4.16928 4.26215 4.30780 4.31165 4.44439 4.52780 4.53397 4.63667 4.64625 4.67579 4.71904 4.80776 4.88488 4.93694 5.01114 5.08978 5.09099 5.15215 5.27091 5.29307 5.34567 5.54117 5.61985 5.68682 6.01172 6.48314 6.62016 6.62898 6.91850 7.11176 7.23818 7.83869 8.30334 9.11676 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.003125 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.980922 B = 8958.945250 C =10107.126671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.558 5.558 3 C 0.279 3.721 4 N -0.320 5.320 5 N -0.459 5.459 6 C 0.187 3.813 7 C -0.145 4.145 8 C 0.516 3.484 9 O -0.589 6.589 10 N -0.691 5.691 11 C 0.142 3.858 12 C 0.160 3.840 13 H 0.031 0.969 14 C -0.122 4.122 15 C -0.102 4.102 16 C -0.130 4.130 17 C 0.156 3.844 18 N -0.609 5.609 19 C -0.328 4.328 20 H 0.052 0.948 21 C -0.061 4.061 22 N -0.943 5.943 23 Si 1.092 2.908 24 H -0.293 1.293 25 H -0.279 1.279 26 H -0.291 1.291 27 C 0.626 3.374 28 O -0.599 6.599 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.071 0.929 32 H 0.291 0.709 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.409 0.591 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.008 0.992 47 H 0.041 0.959 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.004 1.916 8.431 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.142 5.142 5 N -0.278 5.278 6 C 0.065 3.935 7 C -0.186 4.186 8 C 0.303 3.697 9 O -0.471 6.471 10 N -0.340 5.340 11 C 0.017 3.983 12 C 0.054 3.946 13 H 0.048 0.952 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.169 4.169 17 C 0.031 3.969 18 N -0.335 5.335 19 C -0.458 4.458 20 H 0.069 0.931 21 C -0.259 4.259 22 N -0.585 5.585 23 Si 0.919 3.081 24 H -0.220 1.220 25 H -0.205 1.205 26 H -0.218 1.218 27 C 0.325 3.675 28 O -0.476 6.476 29 H 0.106 0.894 30 H 0.150 0.850 31 H 0.089 0.911 32 H 0.306 0.694 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.246 0.754 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.026 0.974 47 H 0.060 0.940 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.036 2.728 8.810 13.630 hybrid contribution -0.591 -1.645 -0.328 1.778 sum -10.627 1.084 8.482 13.640 Atomic orbital electron populations 1.22187 0.71648 1.06093 1.04910 1.46187 1.10268 1.05796 1.66300 1.27178 0.84313 0.96192 0.94123 1.77091 1.20674 0.90633 1.25761 1.49024 1.05967 1.04182 1.68616 1.20967 0.83599 0.93303 0.95643 1.21857 0.96260 1.01050 0.99397 1.20458 0.85310 0.80393 0.83571 1.90627 1.65372 1.59025 1.32083 1.46024 1.28612 1.50788 1.08607 1.21223 0.86785 0.93403 0.96844 1.20887 0.95496 0.87703 0.90524 0.95168 1.21885 0.97096 0.99524 0.97616 1.21347 1.01081 0.96165 0.95403 1.22029 0.97822 0.96730 1.00334 1.20906 0.92519 0.97657 0.85857 1.44346 1.73302 1.01241 1.14596 1.19994 1.43738 0.88896 0.93162 0.93060 1.26585 0.96887 1.05462 0.96988 1.70880 1.41367 1.24707 1.21584 0.83120 0.76430 0.73576 0.74927 1.21952 1.20496 1.21776 1.17125 0.82759 0.85635 0.82031 1.91035 1.78522 1.17199 1.60887 0.89412 0.85002 0.91055 0.69397 0.88894 0.88048 0.88320 0.88480 0.75413 0.90981 0.93665 0.92859 0.89948 0.90434 0.92304 0.93440 0.91377 0.97427 0.94040 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.05 127.77 1.41 2.22 16 2 N -0.56 -10.18 3.14 -683.69 -2.15 -12.33 16 3 C 0.28 3.93 12.66 179.82 2.28 6.20 16 4 N -0.32 -7.86 12.53 -59.42 -0.74 -8.60 16 5 N -0.46 -13.64 3.63 -478.02 -1.73 -15.37 16 6 C 0.19 5.93 5.68 86.38 0.49 6.42 16 7 C -0.14 -4.85 6.02 29.85 0.18 -4.67 16 8 C 0.52 19.94 7.83 87.66 0.69 20.63 16 9 O -0.59 -25.19 15.98 -3.02 -0.05 -25.24 16 10 N -0.69 -27.23 3.80 -463.07 -1.76 -28.98 16 11 C 0.14 5.40 4.43 86.38 0.38 5.78 16 12 C 0.16 6.04 3.02 44.98 0.14 6.18 16 13 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 14 C -0.12 -3.81 5.37 30.67 0.16 -3.65 16 15 C -0.10 -3.01 5.88 30.62 0.18 -2.83 16 16 C -0.13 -4.55 6.10 30.82 0.19 -4.36 16 17 C 0.16 6.90 4.70 86.51 0.41 7.31 16 18 N -0.61 -27.63 2.80 -674.40 -1.89 -29.52 16 19 C -0.33 -16.54 6.83 84.03 0.57 -15.97 16 20 H 0.05 2.70 5.90 -2.91 -0.02 2.68 16 21 C -0.06 -3.24 4.74 84.86 0.40 -2.84 16 22 N -0.94 -53.46 12.50 21.65 0.27 -53.19 16 23 Si 1.09 49.89 29.97 68.60 2.06 51.95 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 27 C 0.63 18.62 8.60 178.99 1.54 20.16 16 28 O -0.60 -22.27 17.71 -4.73 -0.08 -22.35 16 29 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 32 H 0.29 -0.01 8.06 -2.91 -0.02 -0.03 16 33 H 0.09 3.07 8.07 -2.39 -0.02 3.05 16 34 H 0.10 3.20 8.10 -2.39 -0.02 3.18 16 35 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.41 17.05 7.31 -92.70 -0.68 16.37 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.04 1.92 7.48 -2.39 -0.02 1.90 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.01 0.35 7.81 -2.39 -0.02 0.33 16 47 H 0.04 2.11 6.44 -2.39 -0.02 2.10 16 48 H 0.26 14.78 6.58 -92.71 -0.61 14.17 16 Total: -1.00 -76.60 387.80 3.39 -73.21 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.45 Total: 29.84 kcal Atomic # 6 Polarization: 31.57 SS G_CDS: 9.02 Total: 40.59 kcal Atomic # 7 Polarization: -139.99 SS G_CDS: -8.00 Total: -147.99 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -0.13 Total: -47.60 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.06 Total: 51.95 kcal Total: -76.60 3.39 -73.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713253406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.698 kcal (2) G-P(sol) polarization free energy of solvation -76.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds