Wall clock time and date at job start Tue Mar 31 2020 21:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37357 * 125.83298 * 2 1 4 4 N 1.29401 * 108.83313 * 180.02562 * 3 2 1 5 5 N 1.40172 * 108.13535 * 0.02562 * 4 3 2 6 6 C 1.46499 * 126.34721 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47159 * 270.02001 * 6 5 4 8 8 C 1.50703 * 109.47520 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99478 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00262 * 179.97438 * 8 7 6 11 11 C 1.46930 * 120.62917 * 354.06269 * 10 8 7 12 12 C 1.52758 * 109.00475 * 233.57886 * 11 10 8 13 13 C 1.53040 * 109.38535 * 305.58832 * 12 11 10 14 14 C 1.53042 * 109.53652 * 61.24087 * 13 12 11 15 15 C 1.46927 * 120.62976 * 174.33467 * 10 8 7 16 16 H 1.08992 * 109.58645 * 246.29986 * 15 10 8 17 17 C 1.52997 * 109.58497 * 6.58907 * 15 10 8 18 18 N 1.46502 * 109.47057 * 292.89321 * 17 15 10 19 19 C 1.36939 * 119.99683 * 185.83156 * 18 17 15 20 20 H 1.07999 * 120.00360 * 359.97438 * 19 18 17 21 21 C 1.38819 * 119.99589 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99895 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99840 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47255 * 90.00150 * 23 21 19 25 25 H 1.48502 * 109.47338 * 210.00051 * 23 21 19 26 26 H 1.48501 * 109.47376 * 330.00081 * 23 21 19 27 27 C 1.34816 * 125.83484 * 180.33680 * 2 1 3 28 28 O 1.21821 * 126.30192 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46932 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47053 * 119.97320 * 1 2 3 31 31 H 1.08999 * 109.47097 * 239.97370 * 1 2 3 32 32 H 1.08004 * 125.58723 * 0.04000 * 3 2 1 33 33 H 1.09007 * 109.47571 * 30.01872 * 6 5 4 34 34 H 1.08998 * 109.47308 * 150.01971 * 6 5 4 35 35 H 1.08998 * 109.46797 * 300.00442 * 7 6 5 36 36 H 1.09003 * 109.46787 * 60.00217 * 7 6 5 37 37 H 1.08994 * 109.58607 * 353.41858 * 11 10 8 38 38 H 1.09001 * 109.58286 * 113.83963 * 11 10 8 39 39 H 1.09007 * 109.56327 * 185.55132 * 12 11 10 40 40 H 1.08995 * 109.38638 * 65.51754 * 12 11 10 41 41 H 1.09002 * 109.46114 * 301.21875 * 13 12 11 42 42 H 1.09000 * 109.44651 * 181.25201 * 13 12 11 43 43 H 1.09003 * 109.49681 * 178.68050 * 14 13 12 44 44 H 1.09005 * 109.52214 * 58.60339 * 14 13 12 45 45 H 1.08995 * 109.47417 * 52.89286 * 17 15 10 46 46 H 1.09002 * 109.46565 * 172.89410 * 17 15 10 47 47 H 0.96997 * 120.00010 * 5.83208 * 18 17 15 48 48 H 0.97002 * 119.99825 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7353 -0.0005 5 7 3.5344 -0.6662 -0.0015 6 6 4.7313 -1.5109 -0.0019 7 6 5.1486 -1.8036 -1.4445 8 6 6.3803 -2.6720 -1.4449 9 8 6.8752 -3.0227 -0.3947 10 7 6.9311 -3.0597 -2.6123 11 6 6.2716 -2.7541 -3.8892 12 6 6.1025 -4.0477 -4.6839 13 6 7.4611 -4.7373 -4.8269 14 6 8.0056 -5.0879 -3.4403 15 6 8.1993 -3.8012 -2.6318 16 1 8.9733 -3.1893 -3.0948 17 6 8.6105 -4.1519 -1.2004 18 7 8.9426 -2.9243 -0.4731 19 6 9.4543 -2.9970 0.7950 20 1 9.6126 -3.9593 1.2591 21 6 9.7695 -1.8338 1.4839 22 7 9.5760 -0.6611 0.9185 23 14 10.4668 -1.9329 3.2140 24 1 11.9488 -1.9996 3.1474 25 1 10.0595 -0.7286 3.9816 26 1 9.9464 -3.1492 3.8886 27 6 2.2543 -1.0929 -0.0064 28 8 1.8806 -2.2524 -0.0128 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5134 -0.8903 31 1 -0.3633 -0.5142 0.8897 32 1 1.9250 2.1373 0.0006 33 1 5.5412 -0.9938 0.5128 34 1 4.5148 -2.4480 0.5110 35 1 4.3388 -2.3206 -1.9591 36 1 5.3652 -0.8664 -1.9573 37 1 5.2932 -2.3131 -3.6988 38 1 6.8847 -2.0559 -4.4591 39 1 5.7045 -3.8192 -5.6726 40 1 5.4130 -4.7079 -4.1578 41 1 8.1572 -4.0672 -5.3316 42 1 7.3454 -5.6491 -5.4128 43 1 8.9623 -5.6000 -3.5439 44 1 7.2988 -5.7384 -2.9252 45 1 7.7860 -4.6592 -0.6995 46 1 9.4808 -4.8078 -1.2228 47 1 8.8001 -2.0601 -0.8898 48 1 9.7966 0.1517 1.3997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713265085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:48 Heat of formation + Delta-G solvation = 68.204533 kcal Electronic energy + Delta-G solvation = -30781.617443 eV Core-core repulsion = 26683.102552 eV Total energy + Delta-G solvation = -4098.514891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.39433 -40.07027 -37.22088 -37.05096 -35.63484 -34.47824 -32.76032 -32.36805 -31.81744 -29.75072 -29.60648 -27.57472 -26.11917 -24.70310 -24.16349 -22.67244 -22.37523 -21.36608 -20.78919 -20.39722 -18.54703 -17.67937 -17.00171 -16.75411 -16.23406 -15.97661 -15.57224 -15.47005 -15.07730 -14.57600 -14.40994 -14.33338 -14.07534 -13.85808 -13.57483 -13.31831 -13.06831 -13.01594 -12.81356 -12.57019 -12.41601 -12.18124 -12.11105 -11.91560 -11.85133 -11.61654 -11.03350 -10.92537 -10.86026 -10.67741 -10.65613 -10.50768 -10.26002 -10.18324 -10.07293 -9.81412 -9.45733 -8.66551 -8.57908 -8.24066 -7.99220 -6.42938 -5.50774 -2.69831 1.77347 1.94813 2.68004 3.06838 3.41843 3.51703 3.59070 3.62862 3.64972 4.33821 4.61510 4.78552 4.81223 4.90224 4.93741 4.96460 4.97167 5.15011 5.17736 5.21940 5.27468 5.35321 5.46825 5.53928 5.67219 5.69900 5.73570 5.84161 5.86935 5.90020 5.97728 6.02605 6.07568 6.13732 6.20574 6.22165 6.30028 6.41376 6.55145 6.60063 6.73335 7.01272 7.34395 7.64215 7.92128 8.03219 8.06600 8.67343 9.01275 9.78849 10.38615 10.73252 11.73093 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008012 B = 0.004485 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.095713 B = 6241.455263 C = 9063.012428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.565 5.565 3 C 0.240 3.760 4 N -0.269 5.269 5 N -0.443 5.443 6 C 0.175 3.825 7 C -0.148 4.148 8 C 0.476 3.524 9 O -0.440 6.440 10 N -0.616 5.616 11 C 0.113 3.887 12 C -0.135 4.135 13 C -0.117 4.117 14 C -0.128 4.128 15 C 0.143 3.857 16 H 0.067 0.933 17 C 0.162 3.838 18 N -0.693 5.693 19 C -0.207 4.207 20 H 0.064 0.936 21 C -0.020 4.020 22 N -0.938 5.938 23 Si 0.899 3.101 24 H -0.295 1.295 25 H -0.295 1.295 26 H -0.285 1.285 27 C 0.639 3.361 28 O -0.556 6.556 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.015 0.985 47 H 0.380 0.620 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.897 1.919 -12.022 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.295 5.295 3 C -0.059 4.059 4 N -0.090 5.090 5 N -0.264 5.264 6 C 0.055 3.945 7 C -0.190 4.190 8 C 0.260 3.740 9 O -0.307 6.307 10 N -0.355 5.355 11 C -0.011 4.011 12 C -0.173 4.173 13 C -0.154 4.154 14 C -0.167 4.167 15 C 0.040 3.960 16 H 0.085 0.915 17 C 0.034 3.966 18 N -0.336 5.336 19 C -0.339 4.339 20 H 0.082 0.918 21 C -0.215 4.215 22 N -0.589 5.589 23 Si 0.732 3.268 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.211 1.211 27 C 0.339 3.661 28 O -0.430 6.430 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.245 0.755 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.032 0.968 47 H 0.214 0.786 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.790 1.065 -11.196 20.208 hybrid contribution -0.571 0.355 0.635 0.925 sum -17.361 1.420 -10.561 20.370 Atomic orbital electron populations 1.21743 0.74571 1.03875 1.03733 1.45963 1.08721 1.06854 1.67985 1.25946 0.85981 0.94581 0.99392 1.77103 1.17884 0.92464 1.21521 1.49189 1.06352 1.02919 1.67906 1.21326 0.83051 0.93464 0.96704 1.21957 0.97583 1.01037 0.98377 1.20045 0.85825 0.83727 0.84437 1.91177 1.57024 1.52058 1.30465 1.47793 1.23815 1.58669 1.05213 1.21471 0.97737 0.96521 0.85356 1.21843 0.97966 0.97547 0.99937 1.21487 0.96583 1.00199 0.97170 1.21911 1.01582 0.97747 0.95411 1.21464 0.84667 0.91483 0.98407 0.91487 1.20867 0.96577 0.91256 0.87884 1.42281 1.74139 1.02334 1.14863 1.19153 1.31055 0.92232 0.91474 0.91782 1.24577 1.03494 0.95360 0.98057 1.69650 1.55653 0.96312 1.37244 0.86270 0.78546 0.76507 0.85458 1.22264 1.22136 1.21118 1.16835 0.82258 0.85062 0.81949 1.91081 1.77829 1.15199 1.58920 0.89047 0.90681 0.90660 0.75511 0.86805 0.88084 0.89925 0.89240 0.90470 0.92032 0.91312 0.91675 0.91914 0.92120 0.91003 0.91576 0.94376 0.96754 0.78650 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.08 59.85 0.66 1.28 16 2 N -0.57 -5.98 3.14 -130.10 -0.41 -6.39 16 3 C 0.24 2.19 12.61 -89.12 -1.12 1.07 16 4 N -0.27 -3.74 12.53 29.87 0.37 -3.37 16 5 N -0.44 -7.07 3.63 -65.12 -0.24 -7.31 16 6 C 0.17 3.08 5.68 -4.04 -0.02 3.05 16 7 C -0.15 -2.37 4.44 -27.88 -0.12 -2.49 16 8 C 0.48 9.02 6.96 -10.99 -0.08 8.94 16 9 O -0.44 -10.38 9.65 5.55 0.05 -10.33 16 10 N -0.62 -10.05 2.98 -165.49 -0.49 -10.54 16 11 C 0.11 1.37 6.30 -3.93 -0.02 1.35 16 12 C -0.13 -1.40 6.06 -26.83 -0.16 -1.56 16 13 C -0.12 -1.25 5.89 -26.69 -0.16 -1.41 16 14 C -0.13 -1.70 5.37 -26.61 -0.14 -1.85 16 15 C 0.14 2.45 2.95 -67.60 -0.20 2.25 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 C 0.16 3.53 4.87 -4.04 -0.02 3.51 16 18 N -0.69 -18.49 3.15 -59.91 -0.19 -18.68 16 19 C -0.21 -6.14 9.69 -15.06 -0.15 -6.29 16 20 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 22 N -0.94 -29.54 13.06 55.49 0.72 -28.82 16 23 Si 0.90 23.86 29.55 -169.99 -5.02 18.84 16 24 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 25 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 C 0.64 9.97 8.61 -86.74 -0.75 9.22 16 28 O -0.56 -10.42 17.77 5.08 0.09 -10.33 16 29 H 0.09 0.19 8.07 -51.93 -0.42 -0.23 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.23 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.11 2.30 8.10 -51.92 -0.42 1.88 16 34 H 0.10 1.88 8.07 -51.93 -0.42 1.47 16 35 H 0.08 1.21 7.44 -51.93 -0.39 0.82 16 36 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 37 H 0.08 0.86 5.96 -51.93 -0.31 0.55 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.04 0.91 6.50 -51.93 -0.34 0.57 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.38 10.74 6.82 -40.82 -0.28 10.46 16 48 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -38.95 385.62 -9.29 -48.23 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.61 Total: 6.53 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: -2.38 Total: 16.35 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -0.23 Total: -75.11 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.14 Total: -20.66 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.02 Total: 18.84 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.95 -9.29 -48.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713265085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.438 kcal (2) G-P(sol) polarization free energy of solvation -38.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds